{"id":"https://openalex.org/W2790731199","doi":"https://doi.org/10.1186/s13326-018-0181-1","title":"Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature","display_name":"Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature","publication_year":2018,"publication_date":"2018-04-12","ids":{"openalex":"https://openalex.org/W2790731199","doi":"https://doi.org/10.1186/s13326-018-0181-1","mag":"2790731199","pmid":"https://pubmed.ncbi.nlm.nih.gov/29650041"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-018-0181-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0181-1","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-018-0181-1","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-018-0181-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090070223","display_name":"Mercedes Arg\u00fcello Casteleiro","orcid":"https://orcid.org/0000-0001-9469-2068"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Mercedes Arguello Casteleiro","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047947755","display_name":"George Demetriou","orcid":"https://orcid.org/0000-0002-1766-1652"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"George Demetriou","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012324312","display_name":"Warren Read","orcid":"https://orcid.org/0000-0003-4902-425X"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Warren Read","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031527984","display_name":"Maria Jesus Fernandez Prieto","orcid":"https://orcid.org/0000-0003-2312-1414"},"institutions":[{"id":"https://openalex.org/I54459138","display_name":"University of Salford","ror":"https://ror.org/01tmqtf75","country_code":"GB","type":"education","lineage":["https://openalex.org/I54459138"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria Jesus Fernandez Prieto","raw_affiliation_strings":["Salford Languages, University of Salford, Salford, UK"],"affiliations":[{"raw_affiliation_string":"Salford Languages, University of Salford, Salford, UK","institution_ids":["https://openalex.org/I54459138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090333121","display_name":"Nava Maroto","orcid":"https://orcid.org/0000-0002-0349-7716"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Nava Maroto","raw_affiliation_strings":["Departamento de Ling\u00fc\u00edstica Aplicada a la Ciencia y a la Tecnolog\u00eda, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Ling\u00fc\u00edstica Aplicada a la Ciencia y a la Tecnolog\u00eda, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024322166","display_name":"Diego Maseda Fernandez","orcid":"https://orcid.org/0000-0002-2678-3360"},"institutions":[{"id":"https://openalex.org/I196539022","display_name":"Mid Cheshire Hospitals NHS Foundation Trust","ror":"https://ror.org/02kr3gj55","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I196539022"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Diego Maseda Fernandez","raw_affiliation_strings":["Midcheshire Hospital Foundation Trust NHS, Crewe, England, UK"],"affiliations":[{"raw_affiliation_string":"Midcheshire Hospital Foundation Trust NHS, Crewe, England, UK","institution_ids":["https://openalex.org/I196539022"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005912060","display_name":"Goran Nenadi\u0107","orcid":"https://orcid.org/0000-0003-0795-5363"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Goran Nenadic","raw_affiliation_strings":["Manchester Institute of Biotechnology, University of Manchester, Manchester, UK","School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Manchester Institute of Biotechnology, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045393131","display_name":"Julie Klein","orcid":"https://orcid.org/0000-0002-3279-0559"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie Klein","raw_affiliation_strings":["Institut National de la Sant\u00e9 et de la Recherche Medicale (INSERM) U1048, Toulouse, France","Universite Toulouse III Paul Sabatier, route de Narbonne, Toulouse, France"],"affiliations":[{"raw_affiliation_string":"Institut National de la Sant\u00e9 et de la Recherche Medicale (INSERM) U1048, Toulouse, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universite Toulouse III Paul Sabatier, route de Narbonne, Toulouse, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105350782","display_name":"John Keane","orcid":"https://orcid.org/0000-0001-9022-4339"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John Keane","raw_affiliation_strings":["Manchester Institute of Biotechnology, University of Manchester, Manchester, UK","School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Manchester Institute of Biotechnology, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Stevens","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK. Robert.Stevens@manchester.ac.uk","School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK. Robert.Stevens@manchester.ac.uk","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5090070223"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":2.598,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.90553731,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"13","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9292178153991699},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8339574337005615},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.612497091293335},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5519296526908875},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.49240028858184814},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.47636887431144714},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.47242677211761475},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4716101288795471},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4389899969100952},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.42561620473861694},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4235492944717407},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.22555285692214966},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1885857880115509},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07917720079421997}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9292178153991699},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8339574337005615},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.612497091293335},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5519296526908875},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.49240028858184814},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.47636887431144714},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.47242677211761475},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4716101288795471},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4389899969100952},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.42561620473861694},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4235492944717407},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.22555285692214966},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1885857880115509},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07917720079421997},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002318","descriptor_name":"Cardiovascular Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002318","descriptor_name":"Cardiovascular Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002318","descriptor_name":"Cardiovascular Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002318","descriptor_name":"Cardiovascular Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002318","descriptor_name":"Cardiovascular Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002318","descriptor_name":"Cardiovascular Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002318","descriptor_name":"Cardiovascular Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002318","descriptor_name":"Cardiovascular Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/s13326-018-0181-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0181-1","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-018-0181-1","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:29650041","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29650041","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:usir.salford.ac.uk:47021","is_oa":true,"landing_page_url":null,"pdf_url":"http://usir.salford.ac.uk/id/eprint/47021/1/PMC5896136.pdf","source":{"id":"https://openalex.org/S4306401501","display_name":"University of Salford Institutional Repository (University of Salford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I54459138","host_organization_name":"University of Salford","host_organization_lineage":["https://openalex.org/I54459138"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:58c2e38662004bfd85f0b2e5004baecc","is_oa":true,"landing_page_url":"https://doaj.org/article/58c2e38662004bfd85f0b2e5004baecc","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 9, Iss 1, Pp 1-24 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4834673","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5896136","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5896136","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5896136","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/95e005df-001d-47be-8468-f24479845109","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/95e005df-001d-47be-8468-f24479845109","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Arguello Casteleiro, M, Demetriou, G, Read, W, Fernandez Prieto, M J, Maroto, N, Maseda Fernandez, D, Nenadic, G, Klein, J, Keane, J & Stevens, R 2018, 'Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature', Journal of Biomedical Semantics, vol. 9, no. 13. https://doi.org/10.1186/s13326-018-0181-1","raw_type":"article"},{"id":"pmh:oai:zenodo.org:1218765","is_oa":true,"landing_page_url":"https://zenodo.org/record/1218765","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics 9(1) 13","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s13326-018-0181-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0181-1","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-018-0181-1","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3981126665","display_name":null,"funder_award_id":"Seventh Framework Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4457955224","display_name":null,"funder_award_id":"MR/K006665/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6804517001","display_name":null,"funder_award_id":"603288","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7346109562","display_name":null,"funder_award_id":"MC_PC_13042","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8796945004","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2790731199.pdf","grobid_xml":"https://content.openalex.org/works/W2790731199.grobid-xml"},"referenced_works_count":91,"referenced_works":["https://openalex.org/W202767273","https://openalex.org/W999446416","https://openalex.org/W1483118642","https://openalex.org/W1564494788","https://openalex.org/W1567365482","https://openalex.org/W1615991656","https://openalex.org/W1854884267","https://openalex.org/W1859283887","https://openalex.org/W1880262756","https://openalex.org/W1912982817","https://openalex.org/W1964670939","https://openalex.org/W1966475681","https://openalex.org/W1969114498","https://openalex.org/W1975879668","https://openalex.org/W1977556410","https://openalex.org/W1981617416","https://openalex.org/W1983578042","https://openalex.org/W1988624983","https://openalex.org/W1994306321","https://openalex.org/W1994843778","https://openalex.org/W2007709031","https://openalex.org/W2033237963","https://openalex.org/W2040884411","https://openalex.org/W2047782770","https://openalex.org/W2048140075","https://openalex.org/W2052981070","https://openalex.org/W2053154970","https://openalex.org/W2053921957","https://openalex.org/W2076766778","https://openalex.org/W2078754983","https://openalex.org/W2084377579","https://openalex.org/W2091978351","https://openalex.org/W2094726706","https://openalex.org/W2101819947","https://openalex.org/W2103397879","https://openalex.org/W2107005506","https://openalex.org/W2107580398","https://openalex.org/W2107743791","https://openalex.org/W2109070394","https://openalex.org/W2112184938","https://openalex.org/W2112192177","https://openalex.org/W2118020653","https://openalex.org/W2121227244","https://openalex.org/W2121844933","https://openalex.org/W2127289991","https://openalex.org/W2131660156","https://openalex.org/W2133943399","https://openalex.org/W2139067830","https://openalex.org/W2141766660","https://openalex.org/W2142955026","https://openalex.org/W2147880316","https://openalex.org/W2153222072","https://openalex.org/W2153579005","https://openalex.org/W2154139219","https://openalex.org/W2154142897","https://openalex.org/W2155653793","https://openalex.org/W2156952734","https://openalex.org/W2157825442","https://openalex.org/W2158698691","https://openalex.org/W2160171761","https://openalex.org/W2162456950","https://openalex.org/W2163107094","https://openalex.org/W2165371346","https://openalex.org/W2165681080","https://openalex.org/W2169813772","https://openalex.org/W2169918010","https://openalex.org/W2170282111","https://openalex.org/W2178441628","https://openalex.org/W2251157338","https://openalex.org/W2251803266","https://openalex.org/W2259172389","https://openalex.org/W2405317410","https://openalex.org/W2411119111","https://openalex.org/W2428528690","https://openalex.org/W2512419983","https://openalex.org/W2515248967","https://openalex.org/W2527896214","https://openalex.org/W2531563875","https://openalex.org/W2533611849","https://openalex.org/W2573117738","https://openalex.org/W2592783837","https://openalex.org/W2919115771","https://openalex.org/W2950225692","https://openalex.org/W2950577311","https://openalex.org/W3216404684","https://openalex.org/W4237381349","https://openalex.org/W6639619044","https://openalex.org/W6644682428","https://openalex.org/W6678277124","https://openalex.org/W6683234550","https://openalex.org/W6683709678"],"related_works":["https://openalex.org/W2106830745","https://openalex.org/W2281978860","https://openalex.org/W2941245232","https://openalex.org/W2599177070","https://openalex.org/W2301631766","https://openalex.org/W2093541638","https://openalex.org/W2057119643","https://openalex.org/W2794019507","https://openalex.org/W4392847694","https://openalex.org/W1966526845"],"abstract_inverted_index":{"This":[0],"study":[1],"shows":[2],"performance":[3],"improvements":[4],"for":[5,42,59],"both":[6,43],"CBOW":[7,44,52],"and":[8,23,45,53],"Skip-gram":[9,46,50],"on":[10],"a":[11],"gene/protein":[12,60],"synonym":[13],"detection":[14],"task":[15],"by":[16],"adding":[17],"knowledge":[18],"formalised":[19],"in":[20,38],"the":[21,26,31,64],"CVDO":[22,32],"without":[24],"modifying":[25],"word":[27],"embeddings":[28],"created.":[29],"Hence,":[30],"supplies":[33],"context":[34],"that":[35],"is":[36],"effective":[37],"inducing":[39],"term":[40,57],"variability":[41],"while":[47],"reducing":[48],"ambiguity.":[49],"outperforms":[51],"finds":[54],"more":[55],"pertinent":[56],"variants":[58],"names":[61],"annotated":[62],"from":[63],"scientific":[65],"literature.":[66]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2018-03-29T00:00:00"}