{"id":"https://openalex.org/W2779933443","doi":"https://doi.org/10.1186/s13326-017-0167-4","title":"Integrating phenotype ontologies with PhenomeNET","display_name":"Integrating phenotype ontologies with PhenomeNET","publication_year":2017,"publication_date":"2017-12-01","ids":{"openalex":"https://openalex.org/W2779933443","doi":"https://doi.org/10.1186/s13326-017-0167-4","mag":"2779933443","pmid":"https://pubmed.ncbi.nlm.nih.gov/29258588"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-017-0167-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-017-0167-4","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-017-0167-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-017-0167-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045878566","display_name":"Miguel \u00c1ngel Rodr\u00edguez\u2010Garc\u00eda","orcid":"https://orcid.org/0000-0001-6244-6532"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Miguel \u00c1ngel Rodr\u00edguez-Garc\u00eda","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia","Computer, Electrical and Mathematical Sciences & Engineering Division (CEMSE), King Abdullah University of Science and Technology, 4700 KAUST, PO Box 2882, Thuwal, 23955-6900, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences & Engineering Division (CEMSE), King Abdullah University of Science and Technology, 4700 KAUST, PO Box 2882, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089900113","display_name":"Georgios V. Gkoutos","orcid":"https://orcid.org/0000-0002-2061-091X"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Georgios V. Gkoutos","raw_affiliation_strings":["College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham, B15 2TT, UK","Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, SY23 2AX, UK","Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, B15 2TT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, SY23 2AX, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I4210146599"]},{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I1308923049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059588755","display_name":"Paul N. Schofield","orcid":"https://orcid.org/0000-0002-5111-7263"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul N. Schofield","raw_affiliation_strings":["Department of Physiology, Development & Neuroscience, University of Cambridge, Downing Street, Cambridge, CB2 3EG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology, Development & Neuroscience, University of Cambridge, Downing Street, Cambridge, CB2 3EG, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Robert Hoehndorf","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia. robert.hoehndorf@kaust.edu.sa","Computer, Electrical and Mathematical Sciences & Engineering Division (CEMSE), King Abdullah University of Science and Technology, 4700 KAUST, PO Box 2882, Thuwal, 23955-6900, Saudi Arabia. robert.hoehndorf@kaust.edu.sa","Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia","Computer, Electrical and Mathematical Sciences & Engineering Division (CEMSE), King Abdullah University of Science and Technology, 4700 KAUST, PO Box 2882, Thuwal, 23955-6900, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0001-8149-5890","affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia. robert.hoehndorf@kaust.edu.sa","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences & Engineering Division (CEMSE), King Abdullah University of Science and Technology, 4700 KAUST, PO Box 2882, Thuwal, 23955-6900, Saudi Arabia. robert.hoehndorf@kaust.edu.sa","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences & Engineering Division (CEMSE), King Abdullah University of Science and Technology, 4700 KAUST, PO Box 2882, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5043808311"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":3.3452,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.93538882,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"8","issue":"1","first_page":"58","last_page":"58"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9358999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9358999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.022199999541044235,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.0203000009059906,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6717942357063293},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6644907593727112},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.6277922987937927},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.48470020294189453},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4718242585659027},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.4525564908981323},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.4454532265663147},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4439735412597656},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2835688292980194},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2451287806034088},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24419152736663818},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.1682097315788269},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.16264504194259644},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1404913067817688},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.13898271322250366}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6717942357063293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6644907593727112},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.6277922987937927},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.48470020294189453},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4718242585659027},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.4525564908981323},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.4454532265663147},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4439735412597656},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2835688292980194},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2451287806034088},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24419152736663818},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.1682097315788269},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.16264504194259644},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1404913067817688},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.13898271322250366},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":15,"locations":[{"id":"doi:10.1186/s13326-017-0167-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-017-0167-4","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-017-0167-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:29258588","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29258588","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/09d00d4a-9cbc-4b71-82dc-36d46e963227","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/portal/en/publications/integrating-phenotype-ontologies-with-phenomenet(09d00d4a-9cbc-4b71-82dc-36d46e963227).html","pdf_url":"http://pure-oai.bham.ac.uk/ws/files/46242667/Rodriguez_Garcia_et_al_Integrating_phenotype_Journal_of_Biomedical_Semantics_2017.pdf","source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:aber.ac.uk:publications/bb1132fc-96f4-435f-8773-56aa06baec13","is_oa":true,"landing_page_url":"https://pure.aber.ac.uk/portal/en/publications/integrating-phenotype-ontologies-with-phenomenet(bb1132fc-96f4-435f-8773-56aa06baec13).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:doaj.org/article:22a42f40b8c547babdc92ab743e2f6ac","is_oa":true,"landing_page_url":"https://doaj.org/article/22a42f40b8c547babdc92ab743e2f6ac","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 8, Iss 1, Pp 1-11 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4651430","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5735523","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:Publications/09d00d4a-9cbc-4b71-82dc-36d46e963227","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/09d00d4a-9cbc-4b71-82dc-36d46e963227","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/09d00d4a-9cbc-4b71-82dc-36d46e963227","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rodr\u00edguez-Garc\u00eda, M \u00c1, Gkoutos, G V, Schofield, P N & Hoehndorf, R 2017, 'Integrating phenotype ontologies with PhenomeNET', Journal of Biomedical Semantics, vol. 8, pp. 58. https://doi.org/10.1186/s13326-017-0167-4","raw_type":"article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/626413","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/626413","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/270268","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/270268","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/273459","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/273459","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/289514","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/289514","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.17863/cam.17119","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.17119","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Collection"},{"id":"doi:10.17863/cam.20504","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.20504","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.17863/cam.36764","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.36764","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1186/s13326-017-0167-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-017-0167-4","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-017-0167-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1382428613","display_name":null,"funder_award_id":"BBS/OS/GC/000011C","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G1786638435","display_name":null,"funder_award_id":"FCC/1/1976-08-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G1843754208","display_name":"National Plant Phenomics Centre","funder_award_id":"BBS/E/W/10961A01","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2272415857","display_name":null,"funder_award_id":"BB/J004464/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2561086932","display_name":null,"funder_award_id":"IOS-1340112","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G476251407","display_name":"BBSRC-NCG in Plant Phenotyping","funder_award_id":"BBS/E/W/0012844A","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5627136915","display_name":null,"funder_award_id":"BBS/E/W/0012844A","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5828286889","display_name":"cROP:   Common Reference Ontologies and Applications for Plant Biology","funder_award_id":"1340112","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5948631762","display_name":null,"funder_award_id":"BBS/E/W/10961A01","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7019040726","display_name":null,"funder_award_id":"284443","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G71902364","display_name":"Data management and access to resources","funder_award_id":"BBS/OS/GC/000011C","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2779933443.pdf","grobid_xml":"https://content.openalex.org/works/W2779933443.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W55962619","https://openalex.org/W102861580","https://openalex.org/W1501985518","https://openalex.org/W1562303674","https://openalex.org/W1593611264","https://openalex.org/W1659833910","https://openalex.org/W1699724838","https://openalex.org/W1741736375","https://openalex.org/W1757909678","https://openalex.org/W1974896839","https://openalex.org/W1975138006","https://openalex.org/W1978196155","https://openalex.org/W1994474588","https://openalex.org/W1997143682","https://openalex.org/W2010798628","https://openalex.org/W2020157607","https://openalex.org/W2022451103","https://openalex.org/W2024097840","https://openalex.org/W2033377040","https://openalex.org/W2040712196","https://openalex.org/W2041063545","https://openalex.org/W2056065877","https://openalex.org/W2057104411","https://openalex.org/W2078720156","https://openalex.org/W2081619597","https://openalex.org/W2084168100","https://openalex.org/W2098440497","https://openalex.org/W2103017472","https://openalex.org/W2106350001","https://openalex.org/W2110233415","https://openalex.org/W2116034137","https://openalex.org/W2117243134","https://openalex.org/W2118100588","https://openalex.org/W2121312514","https://openalex.org/W2124045889","https://openalex.org/W2124991490","https://openalex.org/W2126434293","https://openalex.org/W2128365672","https://openalex.org/W2131660156","https://openalex.org/W2133550211","https://openalex.org/W2135790475","https://openalex.org/W2136265964","https://openalex.org/W2136410628","https://openalex.org/W2145547964","https://openalex.org/W2145627818","https://openalex.org/W2146495783","https://openalex.org/W2149907293","https://openalex.org/W2158191506","https://openalex.org/W2158698691","https://openalex.org/W2159092541","https://openalex.org/W2159583324","https://openalex.org/W2162361752","https://openalex.org/W2164290176","https://openalex.org/W2164508904","https://openalex.org/W2170282111","https://openalex.org/W2237812244","https://openalex.org/W2295809021","https://openalex.org/W2304023334","https://openalex.org/W2338289743","https://openalex.org/W2396476379","https://openalex.org/W2403188852","https://openalex.org/W2404618885","https://openalex.org/W2558643140","https://openalex.org/W2585641246","https://openalex.org/W2605099106","https://openalex.org/W2606379926","https://openalex.org/W2620579009","https://openalex.org/W3099272318","https://openalex.org/W4234674830"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2074740504","https://openalex.org/W3013644380","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W2258998699","https://openalex.org/W1998405066","https://openalex.org/W2171737904","https://openalex.org/W2029483977"],"abstract_inverted_index":{"BACKGROUND:":[0],"Integration":[1],"and":[2,9,23,30,37,51,58,111,126,150,178,203],"analysis":[3],"of":[4,20,28,75,142,145],"phenotype":[5,83,125,180],"data":[6],"from":[7,123],"humans":[8],"model":[10,38,195],"organisms":[11,196],"is":[12],"a":[13,65,139],"key":[14],"challenge":[15],"in":[16,35,100,168,190,194],"building":[17],"our":[18],"understanding":[19],"normal":[21],"biology":[22],"pathophysiology.":[24],"However,":[25],"the":[26,117],"range":[27],"phenotypes":[29,53,99],"anatomical":[31],"details":[32],"being":[33],"captured":[34],"clinical":[36],"organism":[39],"databases":[40],"presents":[41],"complex":[42],"problems":[43],"when":[44],"attempting":[45],"to":[46,81,88,96,119,176,199],"match":[47],"classes":[48,122],"across":[49,52],"species":[50],"as":[54,56,73],"diverse":[55],"behaviour":[57],"neoplasia.":[59],"We":[60,133],"have":[61],"previously":[62],"developed":[63],"PhenomeNET,":[64],"system":[66],"for":[67,187],"disease":[68,128],"gene":[69],"prioritization":[70],"that":[71,135],"includes":[72],"one":[74],"its":[76],"components":[77],"an":[78],"ontology":[79],"designed":[80],"integrate":[82,179],"ontologies.":[84,170,181],"While":[85],"not":[86],"applicable":[87],"matching":[89,164],"arbitrary":[90],"ontologies,":[91],"PhenomeNET":[92,118,172],"can":[93,137,173,184],"be":[94,153,174,185],"used":[95,175,198],"identify":[97,120,138,200],"related":[98,121],"different":[101],"species,":[102],"including":[103],"human,":[104],"mouse,":[105],"zebrafish,":[106],"nematode":[107],"worm,":[108],"fruit":[109],"fly,":[110],"yeast.":[112],"RESULTS:":[113],"Here,":[114],"we":[115,136],"apply":[116],"two":[124,127],"ontologies":[129],"using":[130],"automated":[131,148,160],"reasoning.":[132],"demonstrate":[134],"large":[140],"number":[141],"mappings,":[143],"some":[144],"which":[146,191],"require":[147],"reasoning":[149,161],"cannot":[151],"easily":[152],"identified":[154],"through":[155],"lexical":[156,163],"approaches":[157],"alone.":[158],"Combining":[159],"with":[162],"further":[165],"improves":[166],"results":[167,183],"aligning":[169],"CONCLUSIONS:":[171],"align":[177],"The":[182],"utilized":[186],"biomedical":[188],"analyses":[189],"phenomena":[192],"observed":[193],"are":[197],"causative":[201],"genes":[202],"mutations":[204],"underlying":[205],"human":[206],"disease.":[207]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
