{"id":"https://openalex.org/W2589937067","doi":"https://doi.org/10.1186/s13326-017-0113-5","title":"12 years on \u2013 Is the NLM medical text indexer still useful and relevant?","display_name":"12 years on \u2013 Is the NLM medical text indexer still useful and relevant?","publication_year":2017,"publication_date":"2017-02-23","ids":{"openalex":"https://openalex.org/W2589937067","doi":"https://doi.org/10.1186/s13326-017-0113-5","mag":"2589937067","pmid":"https://pubmed.ncbi.nlm.nih.gov/28231809"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-017-0113-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-017-0113-5","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-017-0113-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-017-0113-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022152853","display_name":"James G. Mork","orcid":"https://orcid.org/0000-0002-0346-1350"},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James Mork","raw_affiliation_strings":["US National Library of Medicine, 8600 Rockville Pike, Bethesda, USA. jmork@mail.nlm.nih.gov","US National Library of Medicine, 8600 Rockville Pike, Bethesda, USA"],"raw_orcid":"https://orcid.org/0000-0002-0346-1350","affiliations":[{"raw_affiliation_string":"US National Library of Medicine, 8600 Rockville Pike, Bethesda, USA. jmork@mail.nlm.nih.gov","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"US National Library of Medicine, 8600 Rockville Pike, Bethesda, USA","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018615989","display_name":"Alan R. Aronson","orcid":null},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan Aronson","raw_affiliation_strings":["US National Library of Medicine, 8600 Rockville Pike, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"US National Library of Medicine, 8600 Rockville Pike, Bethesda, USA","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046764593","display_name":"Dina Demner\u2010Fushman","orcid":null},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dina Demner-Fushman","raw_affiliation_strings":["US National Library of Medicine, 8600 Rockville Pike, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"US National Library of Medicine, 8600 Rockville Pike, Bethesda, USA","institution_ids":["https://openalex.org/I2800548410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022152853"],"corresponding_institution_ids":["https://openalex.org/I2800548410"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":3.0606,"has_fulltext":true,"cited_by_count":71,"citation_normalized_percentile":{"value":0.92200236,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.46380001306533813,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.46380001306533813,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13516","display_name":"Publishing and Scholarly Communication","score":0.11150000244379044,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.11129999905824661,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7715719938278198},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4965248703956604},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.424255907535553},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3519957661628723}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7715719938278198},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4965248703956604},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.424255907535553},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3519957661628723}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s13326-017-0113-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-017-0113-5","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-017-0113-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:28231809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28231809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5324252","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5324252","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-017-0113-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-017-0113-5","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-017-0113-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2589937067.pdf","grobid_xml":"https://content.openalex.org/works/W2589937067.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W68484681","https://openalex.org/W206402474","https://openalex.org/W971231729","https://openalex.org/W1552716626","https://openalex.org/W1575972883","https://openalex.org/W1981208470","https://openalex.org/W2057803903","https://openalex.org/W2061172803","https://openalex.org/W2088339844","https://openalex.org/W2101747459","https://openalex.org/W2114453188","https://openalex.org/W2122402213","https://openalex.org/W2122997662","https://openalex.org/W2182889308","https://openalex.org/W2398645150","https://openalex.org/W2400171164","https://openalex.org/W2417932737","https://openalex.org/W2576362586"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"BACKGROUND:":[0],"Facing":[1],"a":[2,87],"growing":[3],"workload":[4],"and":[5,34,53,75,109,133,151,204,206,211,258,299],"dwindling":[6],"resources,":[7],"the":[8,16,47,67,80,117,131,148,155,167,174,185,190,232,239,243,252,275,292],"US":[9],"National":[10],"Library":[11],"of":[12,36,50,64,90,119,184,254,266,280],"Medicine":[13],"(NLM)":[14],"created":[15],"Indexing":[17],"Initiative":[18],"project":[19,52],"in":[20,130,163,182,274],"1996.":[21],"This":[22],"cross-library":[23],"team's":[24],"mission":[25],"is":[26,46,72,113,171,201,261,284,296],"to":[27,93,99,123,173,208,222,248,263],"explore":[28],"indexing":[29,58,233,267],"methodologies":[30],"for":[31],"ensuring":[32],"quality":[33],"currency":[35],"NLM":[37,41,283],"document":[38],"collections.":[39],"The":[40,137,213,278],"Medical":[42],"Text":[43],"Indexer":[44],"(MTI)":[45],"main":[48],"product":[49],"this":[51,65],"has":[54],"been":[55],"providing":[56],"automated":[57],"recommendations":[59],"since":[60],"2002.":[61],"After":[62],"all":[63],"time,":[66],"questions":[68],"arise":[69],"whether":[70],"MTI":[71,83,100,104,112,120,149,169,179,200,228,238,250,281,295],"still":[73,202,230],"useful":[74,298],"relevant.":[76,300],"METHODS:":[77],"To":[78,115],"answer":[79,116],"question":[81,118],"about":[82],"usefulness,":[84],"we":[85,127,220],"track":[86],"wide":[88],"variety":[89],"statistics":[91],"related":[92],"how":[94,102,110],"frequently":[95],"MEDLINE":[96],"indexers":[97],"refer":[98],"recommendations,":[101],"well":[103,181],"performs":[105],"against":[106],"human":[107],"indexing,":[108],"often":[111],"used.":[114],"relevancy":[121],"compared":[122],"other":[124,152],"available":[125,175],"tools,":[126],"have":[128,140,217,236],"participated":[129],"2013":[132],"2014":[134],"BioASQ":[135,138,186,214],"Challenges.":[136],"Challenges":[139,187],"provided":[141],"us":[142],"with":[143,160],"an":[144],"unbiased":[145],"comparison":[146],"between":[147],"system":[150],"systems":[153],"performing":[154],"same":[156],"task.":[157],"RESULTS:":[158],"(+0.1997)":[159],"modest":[161],"gains":[162],"Recall":[164],"(+0.0454)":[165],"over":[166,242],"years.":[168,244],"consistency":[170,177],"comparable":[172],"indexer":[176],"studies.":[178],"performed":[180],"both":[183],"ranking":[188],"within":[189],"top":[191],"tier":[192],"teams.":[193],"CONCLUSIONS:":[194],"Based":[195],"on":[196],"our":[197],"findings,":[198],"yes,":[199],"relevant":[203],"useful,":[205],"needs":[207],"be":[209],"improved":[210],"expanded.":[212],"Challenge":[215],"results":[216],"shown":[218],"that":[219,235,269,294],"need":[221,247],"incorporate":[223],"more":[224],"machine":[225],"learning":[226],"into":[227,287],"while":[229],"retaining":[231],"rules":[234],"earned":[237],"indexers'":[240],"trust":[241],"We":[245],"also":[246,285],"expand":[249],"through":[251],"use":[253],"full":[255,276],"text,":[256],"when":[257],"where":[259],"it":[260],"available,":[262],"provide":[264],"coverage":[265],"terms":[268],"are":[270],"typically":[271],"only":[272],"found":[273],"text.":[277],"role":[279],"at":[282],"expanding":[286],"new":[288],"areas,":[289],"further":[290],"reinforcing":[291],"idea":[293],"increasingly":[297]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
