{"id":"https://openalex.org/W2521644033","doi":"https://doi.org/10.1186/s13326-016-0097-6","title":"The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation","display_name":"The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation","publication_year":2016,"publication_date":"2016-09-23","ids":{"openalex":"https://openalex.org/W2521644033","doi":"https://doi.org/10.1186/s13326-016-0097-6","mag":"2521644033","pmid":"https://pubmed.ncbi.nlm.nih.gov/27664130"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-016-0097-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0097-6","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0097-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0097-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091806083","display_name":"Pier Luigi Buttigieg","orcid":"https://orcid.org/0000-0002-4366-3088"},"institutions":[{"id":"https://openalex.org/I127251866","display_name":"Alfred-Wegener-Institut Helmholtz-Zentrum f\u00fcr Polar- und Meeresforschung","ror":"https://ror.org/032e6b942","country_code":"DE","type":"facility","lineage":["https://openalex.org/I127251866","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Pier Luigi Buttigieg","raw_affiliation_strings":["Alfred Wegener Institut, Helmholtz Zentrum f\u00fcr Polar- und Meeresforschung, Am Handelshafen 12, 27570, Bremerhaven, Germany. pier.buttigieg@awi.de","Alfred Wegener Institut, Helmholtz Zentrum f\u00fcr Polar- und Meeresforschung, Am Handelshafen 12, 27570, Bremerhaven, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Alfred Wegener Institut, Helmholtz Zentrum f\u00fcr Polar- und Meeresforschung, Am Handelshafen 12, 27570, Bremerhaven, Germany. pier.buttigieg@awi.de","institution_ids":[]},{"raw_affiliation_string":"Alfred Wegener Institut, Helmholtz Zentrum f\u00fcr Polar- und Meeresforschung, Am Handelshafen 12, 27570, Bremerhaven, Germany","institution_ids":["https://openalex.org/I127251866"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025850900","display_name":"Evangelos Pafilis","orcid":"https://orcid.org/0000-0001-5079-0125"},"institutions":[{"id":"https://openalex.org/I4210131924","display_name":"Hellenic Centre for Marine Research","ror":"https://ror.org/038kffh84","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210131924"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Evangelos Pafilis","raw_affiliation_strings":["Institute of Marine Biology Biotechnology and Aquaculture, Hellenic Centre for Marine Research, P.O Box 2214, Heraklion, 71003, Crete, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Marine Biology Biotechnology and Aquaculture, Hellenic Centre for Marine Research, P.O Box 2214, Heraklion, 71003, Crete, Greece","institution_ids":["https://openalex.org/I4210131924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076920798","display_name":"Suzanna Lewis","orcid":"https://orcid.org/0000-0002-8343-612X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzanna E. Lewis","raw_affiliation_strings":["Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011057199","display_name":"Mark Schildhauer","orcid":"https://orcid.org/0000-0003-0632-7576"},"institutions":[{"id":"https://openalex.org/I4210100421","display_name":"National Center for Ecological Analysis and Synthesis","ror":"https://ror.org/0146z4r19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I154570441","https://openalex.org/I4210100421"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark P. Schildhauer","raw_affiliation_strings":["National Center for Ecological Analysis and Synthesis, Univ. of Calif. Santa Barbara, Santa Barbara, CA, 93101, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Ecological Analysis and Synthesis, Univ. of Calif. Santa Barbara, Santa Barbara, CA, 93101, USA","institution_ids":["https://openalex.org/I4210100421"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015253000","display_name":"Ramona Walls","orcid":"https://orcid.org/0000-0001-8815-0078"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ramona L. Walls","raw_affiliation_strings":["CyVerse, Thomas J. Keating Bioresearch Building, 1657 East Helen St, Tucson, AZ, 85721, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CyVerse, Thomas J. Keating Bioresearch Building, 1657 East Helen St, Tucson, AZ, 85721, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Mungall","raw_affiliation_strings":["Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5091806083"],"corresponding_institution_ids":["https://openalex.org/I127251866"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":10.9686,"has_fulltext":true,"cited_by_count":269,"citation_normalized_percentile":{"value":0.98765459,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"57","last_page":"57"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.857699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.857699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.047200001776218414,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.0142000000923872,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8068593144416809},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6238749027252197},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5612608194351196},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5328781008720398},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5311257839202881},{"id":"https://openalex.org/keywords/interoperation","display_name":"Interoperation","score":0.4804132282733917},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4659275710582733},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.4653034806251526},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.4257080554962158},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4256318211555481},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.3680318593978882},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.17385029792785645}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8068593144416809},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6238749027252197},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5612608194351196},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5328781008720398},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5311257839202881},{"id":"https://openalex.org/C139458680","wikidata":"https://www.wikidata.org/wiki/Q12184942","display_name":"Interoperation","level":3,"score":0.4804132282733917},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4659275710582733},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.4653034806251526},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.4257080554962158},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4256318211555481},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.3680318593978882},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.17385029792785645},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.1186/s13326-016-0097-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0097-6","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0097-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:27664130","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27664130","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:epic.awi.de:41825","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400378","display_name":"Helmholtz-Zentrum f\u00fcr Polar-und Meeresforschung (Alfred-Wegener-Institut)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2799732068","host_organization_name":"Royal Prince Alfred Hospital","host_organization_lineage":["https://openalex.org/I2799732068"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1qh6w05z","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1qh6w05z","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of biomedical semantics, vol 7, iss 1","raw_type":"article"},{"id":"pmh:oai:osti.gov:1377498","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1377498","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1618945","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1618945","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5035502","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5035502","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_3060235","is_oa":true,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0003-AEE4-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:qt1qh6w05z","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/1qh6w05z","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Buttigieg, PL; Pafilis, E; Lewis, SE; Schildhauer, MP; Walls, RL; &amp; Mungall, CJ. (2016). The environment ontology in 2016: Bridging domains with increased scope, semantic density, and interoperation. Journal of Biomedical Semantics, 7(1). doi: 10.1186/s13326-016-0097-6. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/1qh6w05z","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13326-016-0097-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0097-6","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0097-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1286251239","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G1515058201","display_name":null,"funder_award_id":"1265383","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2525489728","display_name":null,"funder_award_id":"0753144","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2539837713","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2758699378","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332500","funder_display_name":"University of California, Santa Barbara"},{"id":"https://openalex.org/G2776628454","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3090734178","display_name":null,"funder_award_id":"R24-OD011883","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3644296431","display_name":null,"funder_award_id":"GM10331601","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4082557964","display_name":null,"funder_award_id":"GM10331601","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4528303182","display_name":null,"funder_award_id":"287589","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4600087637","display_name":null,"funder_award_id":"GBMF4491","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5123489780","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G526230902","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G589474519","display_name":"ABYSS - Assessment of bacterial life and matter cycling in deep-sea surface sediments","funder_award_id":"294757","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6124298671","display_name":null,"funder_award_id":"0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6181692023","display_name":"RCN: Phenotype Ontology Research Coordination Network","funder_award_id":"0956049","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G694679094","display_name":null,"funder_award_id":"DBI-0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7233692708","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7538560101","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8431251193","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G8729213724","display_name":null,"funder_award_id":"294757","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"},{"id":"https://openalex.org/G93107851","display_name":null,"funder_award_id":"287589","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321917","display_name":"General Secretariat for Research and Technology","ror":"https://ror.org/04yeh8h63"},{"id":"https://openalex.org/F4320329182","display_name":"Consortium of International Agricultural Research Centers","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332500","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2521644033.pdf","grobid_xml":"https://content.openalex.org/works/W2521644033.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1545338289","https://openalex.org/W1788313271","https://openalex.org/W1844490078","https://openalex.org/W1967552950","https://openalex.org/W1970682724","https://openalex.org/W1985283768","https://openalex.org/W1989348205","https://openalex.org/W1992007465","https://openalex.org/W1999713271","https://openalex.org/W2007069767","https://openalex.org/W2012932054","https://openalex.org/W2018367936","https://openalex.org/W2029356458","https://openalex.org/W2029607925","https://openalex.org/W2031658644","https://openalex.org/W2033377040","https://openalex.org/W2040604047","https://openalex.org/W2043059799","https://openalex.org/W2045444051","https://openalex.org/W2047711914","https://openalex.org/W2049916132","https://openalex.org/W2053039860","https://openalex.org/W2077339871","https://openalex.org/W2079520182","https://openalex.org/W2096704019","https://openalex.org/W2097601813","https://openalex.org/W2097877306","https://openalex.org/W2109109653","https://openalex.org/W2111191870","https://openalex.org/W2113142309","https://openalex.org/W2113806686","https://openalex.org/W2114074735","https://openalex.org/W2114676910","https://openalex.org/W2115921802","https://openalex.org/W2116034137","https://openalex.org/W2119613819","https://openalex.org/W2121378751","https://openalex.org/W2124282646","https://openalex.org/W2128993230","https://openalex.org/W2129687578","https://openalex.org/W2130430745","https://openalex.org/W2135913420","https://openalex.org/W2136291980","https://openalex.org/W2139796947","https://openalex.org/W2146679517","https://openalex.org/W2146906779","https://openalex.org/W2150076366","https://openalex.org/W2150829627","https://openalex.org/W2155370454","https://openalex.org/W2159327312","https://openalex.org/W2160209604","https://openalex.org/W2162385209","https://openalex.org/W2168931046","https://openalex.org/W2178026535","https://openalex.org/W2181917592","https://openalex.org/W2200941093","https://openalex.org/W2254409636","https://openalex.org/W2258959529","https://openalex.org/W2275070382","https://openalex.org/W2302501749","https://openalex.org/W2337221773","https://openalex.org/W2394984303","https://openalex.org/W2412247133","https://openalex.org/W2600753668","https://openalex.org/W2607717815","https://openalex.org/W2773787581","https://openalex.org/W2922146544","https://openalex.org/W2952998058","https://openalex.org/W2985505473","https://openalex.org/W6686347218","https://openalex.org/W6692062428","https://openalex.org/W6711558577"],"related_works":["https://openalex.org/W2187859559","https://openalex.org/W2382017123","https://openalex.org/W72173000","https://openalex.org/W4298842574","https://openalex.org/W2576783425","https://openalex.org/W1506177826","https://openalex.org/W26549824","https://openalex.org/W991275336","https://openalex.org/W2753692548","https://openalex.org/W101751036"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,25,235],"Environment":[2],"Ontology":[3,104],"(ENVO;":[4],"http://www.environmentontology.org/":[5],"),":[6],"first":[7],"described":[8],"in":[9,101,167,226,242,294,326],"2013,":[10,168],"is":[11,52,245],"a":[12,55],"resource":[13],"and":[14,37,43,59,74,95,107,128,134,154,172,177,198,205,222,233,265,269,278,285,302,316,321],"research":[15],"target":[16],"for":[17,49,184,211],"the":[18,30,33,47,76,102,125,150,206,240,306,310],"semantically":[19],"controlled":[20],"description":[21],"of":[22,32,57,152,179,192,215,239,309],"environmental":[23,35,38,50,194,202,317],"entities.":[24],"ontology's":[26],"initial":[27,67],"aim":[28],"was":[29],"representation":[31,308],"biomes,":[34],"features,":[36],"materials":[39],"pertinent":[40],"to":[41,54,78,91,111,120,145,164,201,220,304,323],"genomic":[42],"microbiome-related":[44],"investigations.":[45],"However,":[46],"need":[48],"semantics":[51],"common":[53],"multitude":[56],"fields,":[58],"ENVO's":[60,169,290],"use":[61],"has":[62,252],"steadily":[63],"grown":[64],"since":[65],"its":[66,80,165,180],"description.":[68],"We":[69,85,115],"have":[70,86,116,174,217],"thus":[71],"expanded,":[72],"enhanced,":[73],"generalised":[75],"ontology":[77,257],"support":[79],"increasingly":[81],"diverse":[82],"applications.":[83],"METHODS:":[84],"updated":[87],"our":[88,276],"development":[89],"suite":[90],"promote":[92],"expressivity,":[93],"consistency,":[94],"speed:":[96],"we":[97,141,287,298],"now":[98,189],"develop":[99],"ENVO":[100,123,188,216,251],"Web":[103],"Language":[105],"(OWL)":[106],"employ":[108],"templating":[109],"methods":[110],"accelerate":[112,293],"class":[113],"creation.":[114],"also":[117],"taken":[118],"steps":[119],"better":[121],"align":[122],"with":[124,136,275],"Open":[126],"Biological":[127],"Biomedical":[129],"Ontologies":[130],"(OBO)":[131],"Foundry":[132],"principles":[133],"interoperate":[135],"existing":[137,181],"OBO":[138],"ontologies.":[139],"Further,":[140],"applied":[142],"text-mining":[143],"approaches":[144],"extract":[146],"habitat":[147,158],"information":[148],"from":[149,313],"Encyclopedia":[151],"Life":[153],"automatically":[155],"create":[156],"experimental":[157],"classes":[159],"within":[160],"ENVO.":[161],"RESULTS:":[162],"Relative":[163],"state":[166],"content,":[170],"scope,":[171],"implementation":[173],"been":[175,218,253],"enhanced":[176],"much":[178],"content":[182],"revised":[183],"improved":[185],"semantic":[186,307],"representation.":[187],"offers":[190],"representations":[191],"habitats,":[193],"processes,":[195],"anthropogenic":[196,266],"environments,":[197],"entities":[199],"relevant":[200],"health":[203],"initiatives":[204],"global":[207],"Sustainable":[208],"Development":[209],"Agenda":[210],"2030.":[212],"Several":[213],"branches":[214],"used":[219],"incubate":[221],"seed":[223],"new":[224],"ontologies":[225],"previously":[227],"unrepresented":[228],"domains":[229,261],"such":[230],"as":[231],"food":[232],"agronomy.":[234],"current":[236],"release":[237],"version":[238],"ontology,":[241],"OWL":[243],"format,":[244],"available":[246],"at":[247],"http://purl.obolibrary.org/obo/envo.owl":[248],".":[249],"CONCLUSIONS:":[250],"shaped":[254],"into":[255],"an":[256],"which":[258],"bridges":[259],"multiple":[260],"including":[262],"biomedicine,":[263],"natural":[264],"ecology,":[267],"'omics,":[268],"socioeconomic":[270],"development.":[271],"Through":[272],"continued":[273],"interactions":[274],"users":[277],"partners,":[279],"particularly":[280],"those":[281],"performing":[282],"data":[283],"archiving":[284],"sythesis,":[286],"anticipate":[288],"that":[289],"growth":[291],"will":[292],"2017.":[295],"As":[296],"always,":[297],"invite":[299],"further":[300],"contributions":[301],"collaboration":[303],"advance":[305],"environment,":[311],"ranging":[312],"geographic":[314],"features":[315],"materials,":[318],"across":[319],"habitats":[320],"ecosystems,":[322],"everyday":[324],"objects":[325],"household":[327],"settings.":[328]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":36},{"year":2022,"cited_by_count":72},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":29},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-10-10T00:00:00"}
