{"id":"https://openalex.org/W2511855896","doi":"https://doi.org/10.1186/s13326-016-0092-y","title":"The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation","display_name":"The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation","publication_year":2016,"publication_date":"2016-08-18","ids":{"openalex":"https://openalex.org/W2511855896","doi":"https://doi.org/10.1186/s13326-016-0092-y","mag":"2511855896","pmid":"https://pubmed.ncbi.nlm.nih.gov/27538448"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-016-0092-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0092-y","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0092-y","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0092-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076610873","display_name":"William R. Hogan","orcid":"https://orcid.org/0000-0002-9881-1017"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William R. Hogan","raw_affiliation_strings":["University of Florida, P.O. Box 100219, 2004 Mowry Rd, Gainesville, FL, 32610-0219, USA. hoganwr@ufl.edu","University of Florida, P.O. Box 100219, 2004 Mowry Rd, Gainesville, FL, 32610-0219, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Florida, P.O. Box 100219, 2004 Mowry Rd, Gainesville, FL, 32610-0219, USA. hoganwr@ufl.edu","institution_ids":[]},{"raw_affiliation_string":"University of Florida, P.O. Box 100219, 2004 Mowry Rd, Gainesville, FL, 32610-0219, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075316416","display_name":"Michael M. Wagner","orcid":"https://orcid.org/0000-0002-4437-7016"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael M. Wagner","raw_affiliation_strings":["University of Pittsburgh, 5607 Baum Boulevard, Room 434, Pittsburgh, PA, 15206, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, 5607 Baum Boulevard, Room 434, Pittsburgh, PA, 15206, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047229883","display_name":"Mathias Brochhausen","orcid":"https://orcid.org/0000-0003-1834-3856"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathias Brochhausen","raw_affiliation_strings":["University of Arkansas for Medical Sciences, 4301 W. Markham St. Slot #782, Little Rock, AR, 72205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Arkansas for Medical Sciences, 4301 W. Markham St. Slot #782, Little Rock, AR, 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017781669","display_name":"John Levander","orcid":"https://orcid.org/0000-0002-4475-896X"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Levander","raw_affiliation_strings":["University of Pittsburgh, 5607 Baum Boulevard, Room 434G, Pittsburgh, PA, 15206, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, 5607 Baum Boulevard, Room 434G, Pittsburgh, PA, 15206, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068134371","display_name":"Shawn T. Brown","orcid":"https://orcid.org/0000-0001-6980-8372"},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawn T. Brown","raw_affiliation_strings":["Pittsburgh Supercomputing Center, 300 S. Craig St., Pittsburgh, PA, 15213, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, 300 S. Craig St., Pittsburgh, PA, 15213, USA","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080257945","display_name":"Nicholas Millett","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Millett","raw_affiliation_strings":["University of Pittsburgh, 5607 Baum Boulevard, Room 435\u00a0J, Pittsburgh, PA, 15206, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, 5607 Baum Boulevard, Room 435\u00a0J, Pittsburgh, PA, 15206, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033737089","display_name":"Jay V. DePasse","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jay DePasse","raw_affiliation_strings":["Pittsburgh Supercomputing Center, 300 S. Craig St., Pittsburgh, PA, 15213, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, 300 S. Craig St., Pittsburgh, PA, 15213, USA","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007705764","display_name":"Josh Hanna","orcid":"https://orcid.org/0000-0002-4600-1258"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Josh Hanna","raw_affiliation_strings":["University of Florida, P.O. Box 100212, Gainesville, FL, 32610-0212, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Florida, P.O. Box 100212, Gainesville, FL, 32610-0212, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5076610873"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.608,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.78136017,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"50","last_page":"50"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.20749999582767487,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.20749999582767487,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.08950000256299973,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12090","display_name":"Language and cultural evolution","score":0.05860000103712082,"subfield":{"id":"https://openalex.org/subfields/3316","display_name":"Cultural Studies"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/apollo","display_name":"Apollo","score":0.6943734884262085},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6243505477905273},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6148794293403625},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.6133973598480225},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.4915560185909271},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.4672683775424957},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3696463406085968},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.36151444911956787},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.25311875343322754},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19402262568473816},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17781323194503784},{"id":"https://openalex.org/keywords/environmental-health","display_name":"Environmental health","score":0.16549602150917053}],"concepts":[{"id":"https://openalex.org/C2779821442","wikidata":"https://www.wikidata.org/wiki/Q41633","display_name":"Apollo","level":2,"score":0.6943734884262085},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6243505477905273},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6148794293403625},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.6133973598480225},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.4915560185909271},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.4672683775424957},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3696463406085968},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.36151444911956787},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.25311875343322754},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19402262568473816},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17781323194503784},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.16549602150917053},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058872","descriptor_name":"Epidemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058872","descriptor_name":"Epidemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058872","descriptor_name":"Epidemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-016-0092-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0092-y","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0092-y","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:27538448","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27538448","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:UFDC:AA00052673_00001","is_oa":true,"landing_page_url":"http://ufdc.ufl.edu/AA00052673/00001","pdf_url":null,"source":{"id":"https://openalex.org/S4306400471","display_name":"University of Florida Digital Collections (University of Florida)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I33213144","host_organization_name":"University of Florida","host_organization_lineage":["https://openalex.org/I33213144"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"mixed material"},{"id":"pmh:oai:europepmc.org:3949479","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4989460","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-016-0092-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0092-y","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0092-y","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2707742091","display_name":null,"funder_award_id":"UL1 TR000064","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G4082557964","display_name":null,"funder_award_id":"GM10331601","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4193654915","display_name":null,"funder_award_id":"R01 GM101151","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4251098122","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G5500374692","display_name":null,"funder_award_id":"TR000064","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G6281091285","display_name":null,"funder_award_id":"U24 GM110707","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7599130707","display_name":null,"funder_award_id":"R01GM101151","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7612683197","display_name":null,"funder_award_id":"UL1 TR001427","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2511855896.pdf","grobid_xml":"https://content.openalex.org/works/W2511855896.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W202214938","https://openalex.org/W214843544","https://openalex.org/W1501546233","https://openalex.org/W1527927437","https://openalex.org/W1597538863","https://openalex.org/W1965045549","https://openalex.org/W1993904284","https://openalex.org/W1995395876","https://openalex.org/W1999773781","https://openalex.org/W2013283798","https://openalex.org/W2103017472","https://openalex.org/W2107324390","https://openalex.org/W2107712133","https://openalex.org/W2113142309","https://openalex.org/W2135140530","https://openalex.org/W2142675451","https://openalex.org/W2145615996","https://openalex.org/W2146831689","https://openalex.org/W2153595771","https://openalex.org/W2165477001","https://openalex.org/W2178026535","https://openalex.org/W2345275877","https://openalex.org/W2395648879","https://openalex.org/W2476383448","https://openalex.org/W2972019038","https://openalex.org/W4229926333","https://openalex.org/W4246066782","https://openalex.org/W6601446412","https://openalex.org/W6675471023"],"related_works":["https://openalex.org/W2054178368","https://openalex.org/W2001637022","https://openalex.org/W2749643947","https://openalex.org/W2921637885","https://openalex.org/W4244081656","https://openalex.org/W2981806746","https://openalex.org/W4400809088","https://openalex.org/W2148601393","https://openalex.org/W2937293962","https://openalex.org/W2935892485"],"abstract_inverted_index":{"BACKGROUND:":[0],"We":[1,265],"developed":[2],"the":[3,28,48,55,65,79,169,180,191,197,200,221,234,244,259,334,349,353],"Apollo":[4],"Structured":[5],"Vocabulary":[6],"(Apollo-SV)-an":[7],"OWL2":[8],"ontology":[9],"of":[10,20,30,50,54,57,69,83,85,105,115,156,161,199,224,233,248,292,319,336,340,348],"phenomena":[11,295,350],"in":[12,33,43,270,310,314],"infectious":[13,58,108,153,164,182,207,262,276,298,320],"disease":[14,59,109,165,183,208,263,299,321],"epidemiology":[15,300],"and":[16,67,81,91,152,163,194,219,279,301],"population":[17,135,302],"biology-as":[18],"part":[19],"a":[21,39,113,137,316,341],"project":[22],"whose":[23],"goal":[24],"is":[25,47,107,112,239,356],"to":[26,64,185,204,243,288,343],"increase":[27],"use":[29,42],"epidemic":[31,329],"simulators":[32,106,213,238],"public":[34],"health":[35],"practice.":[36],"Apollo-SV":[37,46,73,101,188,225,271,311,355],"defines":[38],"terminology":[40,193],"for":[41,77,103,214,261,272],"simulator":[44,119],"configuration.":[45],"product":[49],"an":[51,116,174,206],"ontological":[52,285,306,338],"analysis":[53,286,307,339],"domain":[56,342],"epidemiology,":[60],"with":[61],"particular":[62],"attention":[63],"inputs":[66,80],"outputs":[68,82],"nine":[70],"simulators.":[71,330],"RESULTS:":[72],"contains":[74],"802":[75],"classes":[76,141,223,257,269],"representing":[78],"simulators,":[84,187],"which":[86,111,172],"approximately":[87],"half":[88,92],"are":[89,93],"new":[90,268],"imported":[94],"from":[95],"existing":[96,289,345],"ontologies.":[97],"The":[98],"most":[99],"important":[100,140],"class":[102],"users":[104],"scenario,":[110],"representation":[114,318],"ecosystem":[117,143,147,157],"at":[118,124,132],"time":[120],"zero":[121],"that":[122,177,230,323],"has":[123],"least":[125,133],"one":[126,134],"infection":[127,150,280],"process":[128],"(a":[129],"class)":[130],"affecting":[131],"(also":[136],"class).":[138],"Other":[139],"represent":[142,205],"elements":[144,158],"(e.g.,":[145,149,159,217],"households),":[146],"processes":[148],"acquisition":[151],"disease),":[154],"censuses":[155,160],"populations),":[162],"control":[166],"measures.":[167],"In":[168],"larger":[170],"project,":[171],"created":[173],"end-user":[175],"application":[176],"can":[178,324],"send":[179],"same":[181],"scenario":[184],"multiple":[186,328],"serves":[189],"as":[190,258,308],"controlled":[192],"strongly":[195],"influences":[196],"design":[198],"message":[201],"syntax":[202],"used":[203],"scenario.":[209],"As":[210],"we":[211,250],"added":[212],"different":[215],"pathogens":[216],"malaria":[218],"dengue),":[220],"core":[222],"have":[226],"remained":[227],"stable,":[228],"suggesting":[229],"our":[231,284],"conceptualization":[232],"information":[235],"required":[236],"by":[237,297,352],"sound.":[240],"Despite":[241],"adhering":[242],"OBO":[245],"Foundry":[246],"principle":[247],"orthogonality,":[249],"could":[251],"not":[252],"reuse":[253],"Infectious":[254],"Disease":[255],"Ontology":[256],"basis":[260],"scenarios.":[264],"thus":[266],"defined":[267],"host,":[273],"pathogen,":[274],"infection,":[275],"disease,":[277],"colonization,":[278],"acquisition.":[281],"Unlike":[282],"IDO,":[283],"extended":[287],"mathematical":[290,346],"models":[291,347],"key":[293],"biological":[294],"studied":[296,351],"biology.":[303],"CONCLUSION:":[304],"Our":[305,331],"expressed":[309],"was":[312],"instrumental":[313],"developing":[315],"simulator-independent":[317],"scenarios":[322],"be":[325],"run":[326],"on":[327],"experience":[332],"suggests":[333],"importance":[335],"extending":[337],"include":[344],"domain.":[354],"freely":[357],"available":[358],"at:":[359],"http://purl.obolibrary.org/obo/apollo_sv.owl":[360],".":[361]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
