{"id":"https://openalex.org/W2462007197","doi":"https://doi.org/10.1186/s13326-016-0088-7","title":"The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability","display_name":"The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability","publication_year":2016,"publication_date":"2016-07-04","ids":{"openalex":"https://openalex.org/W2462007197","doi":"https://doi.org/10.1186/s13326-016-0088-7","mag":"2462007197","pmid":"https://pubmed.ncbi.nlm.nih.gov/27377652"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-016-0088-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0088-7","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0088-7","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0088-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084833749","display_name":"Alexander D. Diehl","orcid":"https://orcid.org/0000-0001-9990-8331"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexander D. Diehl","raw_affiliation_strings":["Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY, 14203, USA. addiehl@buffalo.edu","Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY, 14203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY, 14203, USA. addiehl@buffalo.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY, 14203, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021290885","display_name":"Terrence F. Meehan","orcid":"https://orcid.org/0000-0003-1980-3228"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Terrence F. Meehan","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031573747","display_name":"Yvonne M. Bradford","orcid":"https://orcid.org/0000-0002-9900-7880"},"institutions":[{"id":"https://openalex.org/I181233156","display_name":"University of Oregon","ror":"https://ror.org/0293rh119","country_code":"US","type":"education","lineage":["https://openalex.org/I181233156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yvonne M. Bradford","raw_affiliation_strings":["ZFIN, the Zebrafish Model Organism Database, 5291 University of Oregon, Eugene, OR, 97403, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ZFIN, the Zebrafish Model Organism Database, 5291 University of Oregon, Eugene, OR, 97403, USA","institution_ids":["https://openalex.org/I181233156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049409463","display_name":"Matthew Brush","orcid":"https://orcid.org/0000-0002-1048-5019"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew H. Brush","raw_affiliation_strings":["Ontology Development Group, Library, Oregon Health and Science University, Portland, Oregon, 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontology Development Group, Library, Oregon Health and Science University, Portland, Oregon, 97239, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037935786","display_name":"Wasila Dahdul","orcid":"https://orcid.org/0000-0003-3162-7490"},"institutions":[{"id":"https://openalex.org/I6002401","display_name":"National Evolutionary Synthesis Center","ror":"https://ror.org/001ykb961","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I6002401"]},{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wasila M. Dahdul","raw_affiliation_strings":["Department of Biology, University of South Dakota, Vermillion, SD, 57069, USA","National Evolutionary Synthesis Center, Durham, NC, 27705, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Dakota, Vermillion, SD, 57069, USA","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"National Evolutionary Synthesis Center, Durham, NC, 27705, USA","institution_ids":["https://openalex.org/I6002401"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011807059","display_name":"David S. Dougall","orcid":null},"institutions":[{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David S. Dougall","raw_affiliation_strings":["Southwestern Medical Center, University of Texas, Dallas, TX, 75235, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Southwestern Medical Center, University of Texas, Dallas, TX, 75235, USA","institution_ids":["https://openalex.org/I867280407","https://openalex.org/I4388891891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024742201","display_name":"Yongqun He","orcid":"https://orcid.org/0000-0001-9189-9661"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yongqun He","raw_affiliation_strings":["Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI, 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI, 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053103903","display_name":"David Osumi-Sutherland","orcid":"https://orcid.org/0000-0002-7073-9172"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Osumi-Sutherland","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053171726","display_name":"Alan Ruttenberg","orcid":"https://orcid.org/0000-0002-1604-3078"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan Ruttenberg","raw_affiliation_strings":["Oral Diagnostics Sciences, University at Buffalo School of Dental Medicine, Buffalo, NY, 14210, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oral Diagnostics Sciences, University at Buffalo School of Dental Medicine, Buffalo, NY, 14210, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058806280","display_name":"Sirarat Sarntivijai","orcid":"https://orcid.org/0000-0002-2548-641X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sirarat Sarntivijai","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032460049","display_name":"Ceri E. Van Slyke","orcid":"https://orcid.org/0000-0002-2244-7917"},"institutions":[{"id":"https://openalex.org/I181233156","display_name":"University of Oregon","ror":"https://ror.org/0293rh119","country_code":"US","type":"education","lineage":["https://openalex.org/I181233156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ceri E. Van Slyke","raw_affiliation_strings":["ZFIN, the Zebrafish Model Organism Database, 5291 University of Oregon, Eugene, OR, 97403, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ZFIN, the Zebrafish Model Organism Database, 5291 University of Oregon, Eugene, OR, 97403, USA","institution_ids":["https://openalex.org/I181233156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041814853","display_name":"Nicole Vasilevsky","orcid":"https://orcid.org/0000-0001-5208-3432"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicole A. Vasilevsky","raw_affiliation_strings":["Ontology Development Group, Library, Oregon Health and Science University, Portland, Oregon, 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontology Development Group, Library, Oregon Health and Science University, Portland, Oregon, 97239, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A. Haendel","raw_affiliation_strings":["Ontology Development Group, Library, Oregon Health and Science University, Portland, Oregon, 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontology Development Group, Library, Oregon Health and Science University, Portland, Oregon, 97239, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016349593","display_name":"Judith A. Blake","orcid":"https://orcid.org/0000-0001-8522-334X"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Judith A. Blake","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, ME, 04609, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, 04609, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Mungall","raw_affiliation_strings":["Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5084833749"],"corresponding_institution_ids":["https://openalex.org/I63190737"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":7.8347,"has_fulltext":true,"cited_by_count":361,"citation_normalized_percentile":{"value":0.97836041,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"44","last_page":"44"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8666999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8666999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.037300001829862595,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.030899999663233757,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8391798734664917},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.78861004114151},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.738206148147583},{"id":"https://openalex.org/keywords/modular-programming","display_name":"Modular programming","score":0.6809797286987305},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5364807844161987},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.5266884565353394},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5176682472229004},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4946896731853485},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3888523578643799},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35426050424575806},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.217250257730484},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.2090643048286438}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8391798734664917},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.78861004114151},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.738206148147583},{"id":"https://openalex.org/C88482812","wikidata":"https://www.wikidata.org/wiki/Q6453666","display_name":"Modular programming","level":2,"score":0.6809797286987305},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5364807844161987},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.5266884565353394},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5176682472229004},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4946896731853485},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3888523578643799},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35426050424575806},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.217250257730484},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.2090643048286438},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009420","descriptor_name":"Nervous System","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009420","descriptor_name":"Nervous System","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009420","descriptor_name":"Nervous System","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":10,"locations":[{"id":"doi:10.1186/s13326-016-0088-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0088-7","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0088-7","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:27377652","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27377652","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:ark:/13030/qt1533q73g","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1533q73g","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1533q73g","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of biomedical semantics, vol 7, iss 1","raw_type":"article"},{"id":"pmh:oai:mouseion.jax.org:stfb2016-1141","is_oa":false,"landing_page_url":"https://mouseion.jax.org/stfb2016/141","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2016","raw_type":"text"},{"id":"pmh:oai:osti.gov:1378778","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1378778","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1618933","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1618933","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4932724","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4932724","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:qt1533q73g","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/1533q73g","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Diehl, AD; Meehan, TF; Bradford, YM; Brush, MH; Dahdul, WM; Dougall, DS; \u00c2\u00a0et al.(2016). The cell ontology 2016: Enhanced content, modularization, and ontology interoperability. Journal of Animal Science and Biotechnology, 7(1). doi: 10.1186/s13326-016-0088-7. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/1533q73g","raw_type":"article"},{"id":"doi:10.25504/fairsharing.j9y503","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.j9y503","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1186/s13326-016-0088-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0088-7","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0088-7","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1098430682","display_name":null,"funder_award_id":"EF-0905606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1286251239","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G1653676391","display_name":null,"funder_award_id":"1R01AI081062","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1658833210","display_name":null,"funder_award_id":"HHSN272201200028C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1965483100","display_name":null,"funder_award_id":"DBI-0641025","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G216544311","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2229575356","display_name":null,"funder_award_id":"-0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2324095473","display_name":null,"funder_award_id":"HG002659","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2391278426","display_name":null,"funder_award_id":"NSF EF-0423641","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G2503023272","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2539837713","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2610688614","display_name":null,"funder_award_id":"0423641","funder_id":"https://openalex.org/F4320337401","funder_display_name":"Division of Emerging Frontiers"},{"id":"https://openalex.org/G2776628454","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G2794496480","display_name":null,"funder_award_id":"HHSN272201200028C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2843378090","display_name":null,"funder_award_id":"0905606","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G2993633737","display_name":null,"funder_award_id":"DBI-1062404","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3446960996","display_name":null,"funder_award_id":"0641025","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3621937125","display_name":null,"funder_award_id":"0905606","funder_id":"https://openalex.org/F4320337401","funder_display_name":"Division of Emerging Frontiers"},{"id":"https://openalex.org/G3624749973","display_name":null,"funder_award_id":"1R24OD011883","funder_id":"https://openalex.org/F4320337349","funder_display_name":"NIH Office of the Director"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4105349646","display_name":null,"funder_award_id":"DBI-1062542","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4311350355","display_name":null,"funder_award_id":"2R01GM080646-06","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4491286837","display_name":null,"funder_award_id":"HG002659","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4574288754","display_name":null,"funder_award_id":"1R01AI081062","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4582215561","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4963411061","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5123489780","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G5429225240","display_name":null,"funder_award_id":"1062404","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5768129421","display_name":null,"funder_award_id":"1062542","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5860850044","display_name":null,"funder_award_id":"HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5896503","display_name":null,"funder_award_id":"HG002273-09Z","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5968137333","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320337401","funder_display_name":"Division of Emerging Frontiers"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6555104736","display_name":null,"funder_award_id":"1R24OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6884266392","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G7203387412","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G7233692708","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7382415512","display_name":"CSBE: A Place for Evolutionary Synthesis in North Carolina's Research Triangle","funder_award_id":"0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7538560101","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7672463193","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7809106007","display_name":null,"funder_award_id":"0905606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7928461881","display_name":null,"funder_award_id":"EF-0905606","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G7976553526","display_name":null,"funder_award_id":"NSF EF-0905606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G805243471","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G839285823","display_name":null,"funder_award_id":"HG002273","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8431251193","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G8533050794","display_name":null,"funder_award_id":"NSF EF-0905606","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320309855","display_name":"National Evolutionary Synthesis Center","ror":"https://ror.org/001ykb961"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337349","display_name":"NIH Office of the Director","ror":"https://ror.org/00fj8a872"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337401","display_name":"Division of Emerging Frontiers","ror":"https://ror.org/01tnvpc68"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2462007197.pdf","grobid_xml":"https://content.openalex.org/works/W2462007197.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W78944135","https://openalex.org/W1490161904","https://openalex.org/W1541298030","https://openalex.org/W1757909678","https://openalex.org/W1925852226","https://openalex.org/W1965827638","https://openalex.org/W1981341993","https://openalex.org/W1986223165","https://openalex.org/W1989838792","https://openalex.org/W1994474588","https://openalex.org/W1997058260","https://openalex.org/W2004884668","https://openalex.org/W2015671099","https://openalex.org/W2015845481","https://openalex.org/W2016602738","https://openalex.org/W2022167592","https://openalex.org/W2025738474","https://openalex.org/W2033377040","https://openalex.org/W2037382435","https://openalex.org/W2040365962","https://openalex.org/W2044257395","https://openalex.org/W2055961987","https://openalex.org/W2062558911","https://openalex.org/W2066604159","https://openalex.org/W2068309352","https://openalex.org/W2078022480","https://openalex.org/W2093541638","https://openalex.org/W2094468530","https://openalex.org/W2095085751","https://openalex.org/W2095723013","https://openalex.org/W2096340575","https://openalex.org/W2096704019","https://openalex.org/W2102983252","https://openalex.org/W2103017472","https://openalex.org/W2105836514","https://openalex.org/W2106830745","https://openalex.org/W2108653105","https://openalex.org/W2108797218","https://openalex.org/W2109899437","https://openalex.org/W2111191870","https://openalex.org/W2111299816","https://openalex.org/W2112493011","https://openalex.org/W2113142309","https://openalex.org/W2116034137","https://openalex.org/W2117628101","https://openalex.org/W2118420309","https://openalex.org/W2119676748","https://openalex.org/W2134009291","https://openalex.org/W2137600012","https://openalex.org/W2142675451","https://openalex.org/W2143742443","https://openalex.org/W2147018385","https://openalex.org/W2148084209","https://openalex.org/W2149378423","https://openalex.org/W2155842211","https://openalex.org/W2162385209","https://openalex.org/W2163670493","https://openalex.org/W2164137907","https://openalex.org/W2165034468","https://openalex.org/W2178026535","https://openalex.org/W2229202799","https://openalex.org/W2231865019","https://openalex.org/W2259938310","https://openalex.org/W2399211273","https://openalex.org/W2406147477","https://openalex.org/W2462007197","https://openalex.org/W2519244818","https://openalex.org/W3147477526","https://openalex.org/W4243920446","https://openalex.org/W6713947079"],"related_works":["https://openalex.org/W2159818280","https://openalex.org/W2066689607","https://openalex.org/W1506177826","https://openalex.org/W2114954739","https://openalex.org/W2889792096","https://openalex.org/W2363188691","https://openalex.org/W1794266373","https://openalex.org/W2357775360","https://openalex.org/W2074013882","https://openalex.org/W4251889114"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,194,245,293],"Cell":[2,152,242],"Ontology":[3,112,154,264],"(CL)":[4],"is":[5,196,211,247],"an":[6,182],"OBO":[7,171,307],"Foundry":[8,308],"candidate":[9],"ontology":[10,162],"covering":[11],"the":[12,25,47,76,82,93,103,107,120,130,146,151,161,175,179,236,241,254,262,266,275,297,306,311,323,330],"domain":[13],"of":[14,31,40,84,129,148,178,219,257,278,284],"canonical,":[15],"natural":[16],"biological":[17],"cell":[18,86,124,220,279],"types.":[19,125],"Since":[20],"its":[21,38],"inception":[22],"in":[23,37,44,67,92,97,100,133,150,160,224,253,322],"2005,":[24],"CL":[26,48,77,94,121,166,195,246,272,298,324],"has":[27,78],"undergone":[28],"multiple":[29],"rounds":[30],"revision":[32],"and":[33,88,96,109,139,155,181,207,210,217,230,240,265,290,310,315,328],"expansion,":[34],"most":[35],"notably":[36],"representation":[39,83,147,277],"hematopoietic":[41],"cells.":[42],"For":[43,105],"vivo":[45],"cells,":[46],"focuses":[49],"on":[50,75,80,185],"vertebrates":[51],"but":[52],"provides":[53],"general":[54],"classes":[55],"that":[56],"can":[57,64],"be":[58,65],"used":[59,114,212,252],"for":[60,143,165,174,188,203,214,235],"other":[61,258],"metazoans,":[62],"which":[63],"subtyped":[66],"species-specific":[68],"ontologies.":[69],"CONSTRUCTION":[70],"AND":[71,192],"CONTENT:":[72],"Recent":[73,158],"work":[74],"focused":[79],"extending":[81],"various":[85],"types,":[87],"developing":[89],"new":[90],"modules":[91],"itself,":[95],"related":[98],"ontologies":[99],"coordination":[101],"with":[102,122,145],"CL.":[104],"example,":[106,261],"Kidney":[108],"Urinary":[110],"Pathway":[111],"was":[113],"as":[115,199,228,232,234,288],"a":[116,168,200,249,301],"template":[117],"to":[118,141,172,273,296,304,318],"populate":[119],"additional":[123],"In":[126],"addition,":[127],"subtypes":[128],"class":[131],"'cell":[132],"vitro'":[134],"have":[135],"received":[136],"improved":[137,189],"definitions":[138,187],"labels":[140],"provide":[142],"modularity":[144],"cells":[149],"Line":[153],"Reagent":[156],"Ontology.":[157],"changes":[159],"development":[163],"methodology":[164],"include":[167],"switch":[169],"from":[170],"OWL":[173],"primary":[176],"encoding":[177],"ontology,":[180,269],"increasing":[183],"reliance":[184],"logical":[186],"reasoning.":[190],"UTILITY":[191],"DISCUSSION:":[193],"now":[197],"mandated":[198],"metadata":[201],"standard":[202],"large":[204],"functional":[205],"genomics":[206],"transcriptomics":[208],"projects,":[209],"extensively":[213],"annotation,":[215],"querying,":[216],"analyses":[218],"type":[221],"specific":[222],"data":[223],"sequencing":[225],"consortia":[226],"such":[227,287],"FANTOM5":[229],"ENCODE,":[231],"well":[233],"NIAID":[237],"ImmPort":[238],"database":[239],"Image":[243],"Library.":[244],"also":[248],"vital":[250],"component":[251],"modular":[255],"construction":[256],"biomedical":[259],"ontologies-for":[260],"Gene":[263],"cross-species":[267],"anatomy":[268],"Uberon,":[270],"use":[271],"support":[274],"consistent":[276],"types":[280],"across":[281],"different":[282],"levels":[283],"anatomical":[285],"granularity,":[286],"tissues":[289],"organs.":[291],"CONCLUSIONS:":[292],"ongoing":[294],"improvements":[295],"make":[299],"it":[300],"valuable":[302],"resource":[303],"both":[305,325],"community":[309],"wider":[312],"scientific":[313],"community,":[314],"we":[316],"continue":[317],"experience":[319],"increased":[320],"interest":[321],"among":[326],"developers":[327],"within":[329],"user":[331],"community.":[332]},"counts_by_year":[{"year":2026,"cited_by_count":21},{"year":2025,"cited_by_count":63},{"year":2024,"cited_by_count":52},{"year":2023,"cited_by_count":45},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":57},{"year":2020,"cited_by_count":40},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":6}],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2016-07-22T00:00:00"}
