{"id":"https://openalex.org/W2473505443","doi":"https://doi.org/10.1186/s13326-016-0079-8","title":"NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease","display_name":"NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease","publication_year":2016,"publication_date":"2016-07-08","ids":{"openalex":"https://openalex.org/W2473505443","doi":"https://doi.org/10.1186/s13326-016-0079-8","mag":"2473505443","pmid":"https://pubmed.ncbi.nlm.nih.gov/27392431"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-016-0079-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0079-8","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0079-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0079-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057947033","display_name":"Anandhi Iyappan","orcid":"https://orcid.org/0000-0002-5571-4962"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anandhi Iyappan","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53113, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029532267","display_name":"Shweta Kawalia","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Shweta Bagewadi Kawalia","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53113, Bonn, Germany. shweta.bagewadi@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany. shweta.bagewadi@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53113, Bonn, Germany. shweta.bagewadi@scai.fraunhofer.de","institution_ids":["https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany. shweta.bagewadi@scai.fraunhofer.de","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052664929","display_name":"Tamara Raschka","orcid":"https://orcid.org/0000-0003-2332-6137"},"institutions":[{"id":"https://openalex.org/I16264642","display_name":"Koblenz University of Applied Sciences","ror":"https://ror.org/04j351e79","country_code":"DE","type":"education","lineage":["https://openalex.org/I16264642"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tamara Raschka","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany","University of Applied Sciences Koblenz, RheinAhrCampus, Joseph-Rovan-Allee 2, 53424, Remagen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"University of Applied Sciences Koblenz, RheinAhrCampus, Joseph-Rovan-Allee 2, 53424, Remagen, Germany","institution_ids":["https://openalex.org/I16264642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53113, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001038624","display_name":"Philipp Senger","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Senger","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029532267"],"corresponding_institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":1.2825,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.80497336,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"7","issue":"1","first_page":"45","last_page":"45"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.21060000360012054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.21060000360012054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13254","display_name":"Macrophage Migration Inhibitory Factor","score":0.12210000306367874,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13452","display_name":"GDF15 and Related Biomarkers","score":0.11089999973773956,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7924565672874451},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.558613657951355},{"id":"https://openalex.org/keywords/alzheimers-disease","display_name":"Alzheimer's disease","score":0.516606867313385},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4781721234321594},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4644854664802551},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.4195812940597534},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3996555805206299},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22503352165222168},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14969614148139954},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.14043426513671875},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07848504185676575}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7924565672874451},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.558613657951355},{"id":"https://openalex.org/C502032728","wikidata":"https://www.wikidata.org/wiki/Q11081","display_name":"Alzheimer's disease","level":3,"score":0.516606867313385},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4781721234321594},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4644854664802551},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.4195812940597534},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3996555805206299},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22503352165222168},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14969614148139954},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.14043426513671875},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07848504185676575},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s13326-016-0079-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0079-8","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0079-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:27392431","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27392431","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:europepmc.org:3904867","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4939021","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:fraunhofer.de:N-422038","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-422038.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/246019","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/246019","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1186/s13326-016-0079-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0079-8","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-016-0079-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6299999952316284}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320337846","display_name":"UCB Pharma","ror":"https://ror.org/01n029866"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2473505443.pdf","grobid_xml":"https://content.openalex.org/works/W2473505443.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W1534454046","https://openalex.org/W1544923801","https://openalex.org/W1576450670","https://openalex.org/W1969142598","https://openalex.org/W1974896839","https://openalex.org/W1980516681","https://openalex.org/W1989832114","https://openalex.org/W2004460342","https://openalex.org/W2006534012","https://openalex.org/W2010581970","https://openalex.org/W2011353204","https://openalex.org/W2016297598","https://openalex.org/W2016461011","https://openalex.org/W2019543926","https://openalex.org/W2020541351","https://openalex.org/W2021181758","https://openalex.org/W2036348300","https://openalex.org/W2036568936","https://openalex.org/W2037296827","https://openalex.org/W2045309790","https://openalex.org/W2045311514","https://openalex.org/W2049310294","https://openalex.org/W2050469298","https://openalex.org/W2054602909","https://openalex.org/W2055079309","https://openalex.org/W2066453373","https://openalex.org/W2077327925","https://openalex.org/W2078771305","https://openalex.org/W2080921531","https://openalex.org/W2085752173","https://openalex.org/W2087968772","https://openalex.org/W2088025160","https://openalex.org/W2092168208","https://openalex.org/W2094258495","https://openalex.org/W2098979213","https://openalex.org/W2100471807","https://openalex.org/W2101525042","https://openalex.org/W2103014296","https://openalex.org/W2103403573","https://openalex.org/W2112543617","https://openalex.org/W2113198638","https://openalex.org/W2113588951","https://openalex.org/W2115853389","https://openalex.org/W2117632114","https://openalex.org/W2122164926","https://openalex.org/W2122320288","https://openalex.org/W2126368530","https://openalex.org/W2129495914","https://openalex.org/W2131223994","https://openalex.org/W2131917724","https://openalex.org/W2132773777","https://openalex.org/W2134697397","https://openalex.org/W2137854030","https://openalex.org/W2141240737","https://openalex.org/W2142514276","https://openalex.org/W2144303444","https://openalex.org/W2146512944","https://openalex.org/W2146538435","https://openalex.org/W2147018385","https://openalex.org/W2151025545","https://openalex.org/W2153892583","https://openalex.org/W2155690268","https://openalex.org/W2159096710","https://openalex.org/W2160948978","https://openalex.org/W2161909145","https://openalex.org/W2162143298","https://openalex.org/W2165428180","https://openalex.org/W2168552795","https://openalex.org/W2170989872","https://openalex.org/W2171848392","https://openalex.org/W2174734928","https://openalex.org/W2188924706","https://openalex.org/W2212657187","https://openalex.org/W2400852852","https://openalex.org/W2444226747","https://openalex.org/W4233456913","https://openalex.org/W4253759977","https://openalex.org/W4254522893","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2533581028","https://openalex.org/W2090817358","https://openalex.org/W2111160383","https://openalex.org/W2056890439","https://openalex.org/W2092424613","https://openalex.org/W3158074726","https://openalex.org/W3133811159","https://openalex.org/W2126703991","https://openalex.org/W2610897791","https://openalex.org/W4366463707"],"abstract_inverted_index":{"BACKGROUND:":[0],"Neurodegenerative":[1],"diseases":[2,105],"are":[3],"incurable":[4],"and":[5,11,44,60,125,168,192,212,219,272,286,297,309,325],"debilitating":[6],"indications":[7],"with":[8,89],"huge":[9],"social":[10],"economic":[12],"impact,":[13],"where":[14],"much":[15],"is":[16,306],"still":[17,98],"to":[18,34,140,189,237,252,259,321],"be":[19,118,190,253],"learnt":[20],"about":[21],"the":[22,37,49,52,82,90,111,119,126,150,163,183,186,223,239,244,270,302],"underlying":[23,85],"molecular":[24,43],"events.":[25],"Mechanistic":[26],"disease":[27,65,74,197],"models":[28,75],"could":[29,117],"offer":[30],"a":[31,64,195,254,263,307,338],"knowledge":[32,148,188,281],"framework":[33,144],"help":[35],"decipher":[36],"complex":[38,104,153],"interactions":[39],"that":[40,233],"occur":[41],"at":[42],"cellular":[45],"levels.":[46],"This":[47,181,199],"motivates":[48],"need":[50],"for":[51,103,115,145,172,299,313,343],"development":[53],"of":[54,67,84,110,152,158,165,185,225,277,284,318],"an":[55,135,142,279],"approach":[56,227],"integrating":[57],"highly":[58,202],"curated":[59,147,167,203,285],"heterogeneous":[61],"data":[62,70,124,171,204],"into":[63,174],"model":[66],"different":[68],"regulatory":[69],"layers.":[71],"Although":[72,290],"several":[73],"exist,":[76],"they":[77],"often":[78],"do":[79,99],"not":[80,100],"consider":[81],"quality":[83,324],"data.":[86,288],"Moreover,":[87],"even":[88],"current":[91],"advancements":[92],"in":[93,149,162,194,331],"semantic":[94,177,303],"web":[95,304],"technology,":[96],"we":[97,133,249],"have":[101,294],"cure":[102],"like":[106],"Alzheimer's":[107],"disease.":[108],"One":[109],"key":[112],"reasons":[113],"accountable":[114],"this":[116,131,159,319],"increasing":[120],"gap":[121],"between":[122],"generated":[123],"derived":[127,187],"knowledge.":[128],"RESULTS:":[129],"In":[130],"paper,":[132],"describe":[134],"approach,":[136],"called":[137],"as":[138,217,262],"NeuroRDF,":[139],"develop":[141],"integrative":[143],"modeling":[146,300],"area":[151],"neurodegenerative":[154],"diseases.":[155],"The":[156,316],"core":[157],"strategy":[160],"lies":[161],"usage":[164],"well":[166,310],"context":[169,326],"specific":[170,196,327],"integration":[173],"one":[175],"single":[176],"web-based":[178],"framework,":[179],"RDF.":[180],"increases":[182],"probability":[184],"novel":[191],"reliable":[193],"context.":[198],"infrastructure":[200],"integrates":[201],"from":[205],"databases":[206],"(Bind,":[207],"IntAct,":[208],"etc.),":[209],"literature":[210],"(PubMed),":[211],"gene":[213],"expression":[214],"resources":[215,236],"(such":[216],"GEO":[218],"ArrayExpress).":[220],"We":[221,266],"illustrate":[222],"effectiveness":[224],"our":[226],"by":[228],"asking":[229],"real-world":[230],"biomedical":[231],"questions":[232],"link":[234],"these":[235],"prioritize":[238],"plausible":[240],"biomarker":[241,335],"candidates.":[242],"Among":[243],"13":[245],"prioritized":[246],"candidate":[247,257],"genes,":[248],"identified":[250],"MIF":[251],"potential":[255],"emerging":[256],"due":[258],"its":[260],"role":[261],"pro-inflammatory":[264],"cytokine.":[265],"additionally":[267],"report":[268],"on":[269],"effort":[271],"challenges":[273],"faced":[274],"during":[275],"generation":[276],"such":[278],"indication-specific":[280],"base":[282],"comprising":[283],"quality-controlled":[287],"CONCLUSION:":[289],"many":[291],"alternative":[292],"approaches":[293],"been":[295],"proposed":[296],"practiced":[298],"diseases,":[301],"technology":[305],"flexible":[308],"established":[311],"solution":[312],"harmonized":[314],"aggregation.":[315],"benefit":[317],"work,":[320],"use":[322],"high":[323],"data,":[328],"becomes":[329],"apparent":[330],"speculating":[332],"previously":[333],"unattended":[334],"candidates":[336],"around":[337],"well-known":[339],"mechanism,":[340],"further":[341],"leveraged":[342],"experimental":[344],"investigations.":[345]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
