{"id":"https://openalex.org/W2237812244","doi":"https://doi.org/10.1186/s13326-016-0045-5","title":"An ontology for major histocompatibility restriction","display_name":"An ontology for major histocompatibility restriction","publication_year":2016,"publication_date":"2016-01-11","ids":{"openalex":"https://openalex.org/W2237812244","doi":"https://doi.org/10.1186/s13326-016-0045-5","mag":"2237812244","pmid":"https://pubmed.ncbi.nlm.nih.gov/26759709"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-016-0045-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0045-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-016-0045-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-016-0045-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069243187","display_name":"Randi Vita","orcid":"https://orcid.org/0000-0001-8957-7612"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Randi Vita","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA"],"raw_orcid":"https://orcid.org/0000-0001-8957-7612","affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009238690","display_name":"James A. Overton","orcid":"https://orcid.org/0000-0001-5139-5557"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James A. Overton","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108546910","display_name":"Emily Seymour","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emily Seymour","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037285448","display_name":"John Sidney","orcid":"https://orcid.org/0000-0002-0987-405X"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Sidney","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041969299","display_name":"Jim Kaufman","orcid":"https://orcid.org/0000-0002-7216-8422"},"institutions":[{"id":"https://openalex.org/I204442077","display_name":"Trinity College","ror":"https://ror.org/019dhar59","country_code":"CA","type":"education","lineage":["https://openalex.org/I204442077"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Jim Kaufman","raw_affiliation_strings":["University of Cambridge, Trinity Ln, Cambridge, CB2 1TN UK","University of Cambridge, Trinity Ln, Cambridge, CB2 1TN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Cambridge, Trinity Ln, Cambridge, CB2 1TN UK","institution_ids":["https://openalex.org/I204442077"]},{"raw_affiliation_string":"University of Cambridge, Trinity Ln, Cambridge, CB2 1TN, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052991048","display_name":"Rebecca L. Tallmadge","orcid":"https://orcid.org/0000-0002-7466-5449"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210151139","display_name":"New York State College of Veterinary Medicine","ror":"https://ror.org/04r17kf39","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4210151139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rebecca L. Tallmadge","raw_affiliation_strings":["Cornell University College of Veterinary Medicine, Ithaca, New York 14853-6401 USA","Cornell University College of Veterinary Medicine, Ithaca, New York, 14853-6401, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell University College of Veterinary Medicine, Ithaca, New York 14853-6401 USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210151139"]},{"raw_affiliation_string":"Cornell University College of Veterinary Medicine, Ithaca, New York, 14853-6401, USA","institution_ids":["https://openalex.org/I4210151139","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110072154","display_name":"Shirley A. Ellis","orcid":null},"institutions":[{"id":"https://openalex.org/I1287548271","display_name":"The Pirbright Institute","ror":"https://ror.org/04xv01a59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1287548271","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Shirley Ellis","raw_affiliation_strings":["The Pirbright Institute, Ash Rd, Woking, GU24 0NF UK","The Pirbright Institute, Ash Rd, Woking, GU24 0NF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Pirbright Institute, Ash Rd, Woking, GU24 0NF UK","institution_ids":["https://openalex.org/I1287548271"]},{"raw_affiliation_string":"The Pirbright Institute, Ash Rd, Woking, GU24 0NF, UK","institution_ids":["https://openalex.org/I1287548271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062606439","display_name":"John A. Hammond","orcid":"https://orcid.org/0000-0002-2213-3248"},"institutions":[{"id":"https://openalex.org/I1287548271","display_name":"The Pirbright Institute","ror":"https://ror.org/04xv01a59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1287548271","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John Hammond","raw_affiliation_strings":["The Pirbright Institute, Ash Rd, Woking, GU24 0NF UK","The Pirbright Institute, Ash Rd, Woking, GU24 0NF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Pirbright Institute, Ash Rd, Woking, GU24 0NF UK","institution_ids":["https://openalex.org/I1287548271"]},{"raw_affiliation_string":"The Pirbright Institute, Ash Rd, Woking, GU24 0NF, UK","institution_ids":["https://openalex.org/I1287548271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021187811","display_name":"Geoff Butcher","orcid":null},"institutions":[{"id":"https://openalex.org/I1302113299","display_name":"Babraham Institute","ror":"https://ror.org/01d5qpn59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1302113299","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Geoff W. Butcher","raw_affiliation_strings":["The Babraham Institute, Cambridge, CB22 3AT UK","The Babraham Institute, Cambridge, CB22 3AT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Babraham Institute, Cambridge, CB22 3AT UK","institution_ids":["https://openalex.org/I1302113299"]},{"raw_affiliation_string":"The Babraham Institute, Cambridge, CB22 3AT, UK","institution_ids":["https://openalex.org/I1302113299"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010966529","display_name":"Alessandro Sette","orcid":"https://orcid.org/0000-0001-7013-2250"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alessandro Sette","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023547268","display_name":"Bjoern Peters","orcid":"https://orcid.org/0000-0002-8457-6693"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bjoern Peters","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California 92037 USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle La Jolla, San Diego, California, 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5069243187"],"corresponding_institution_ids":["https://openalex.org/I1311191458"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":5.5462,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.96210035,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.7875000238418579,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.7875000238418579,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.11270000040531158,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.04619999974966049,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7607093453407288},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5911902189254761},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.5392223000526428},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4790552854537964},{"id":"https://openalex.org/keywords/histocompatibility","display_name":"Histocompatibility","score":0.44741904735565186},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3753649592399597},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.2021051049232483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17826944589614868},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1330549418926239},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.08049845695495605},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07976245880126953},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.07542386651039124}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7607093453407288},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5911902189254761},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.5392223000526428},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4790552854537964},{"id":"https://openalex.org/C202965653","wikidata":"https://www.wikidata.org/wiki/Q2664028","display_name":"Histocompatibility","level":4,"score":0.44741904735565186},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3753649592399597},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.2021051049232483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17826944589614868},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1330549418926239},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.08049845695495605},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07976245880126953},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.07542386651039124},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s13326-016-0045-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0045-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-016-0045-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:26759709","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26759709","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/f07a3d9c-0eda-4cc6-9ad4-002637645922","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/f07a3d9c-0eda-4cc6-9ad4-002637645922","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Vita, R, Overton, J A, Seymour, E, Sidney, J, Kaufman, J, Tallmadge, R L, Ellis, S, Hammond, J, Butcher, G W, Sette, A & Peters, B 2016, 'An ontology for major histocompatibility restriction', Journal of Biomedical Semantics, vol. 7, no. 1. https://doi.org/10.1186/s13326-016-0045-5","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:4709943","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4709943","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/f07a3d9c-0eda-4cc6-9ad4-002637645922","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/portal/en/publications/an-ontology-for-major-histocompatibility-restriction(f07a3d9c-0eda-4cc6-9ad4-002637645922).html","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"doi:10.25504/fairsharing.k893xa","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.k893xa","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1186/s13326-016-0045-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-016-0045-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-016-0045-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2474576906","display_name":null,"funder_award_id":"BBS/E/I/00001410","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4953739559","display_name":"IAH Fellowship:Using comparative genetics to investigate ruminant NK cell receptor evolution and function","funder_award_id":"BBS/E/I/00001410","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5190375192","display_name":null,"funder_award_id":"HHSN272201200010C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G638139689","display_name":"Explore the impact of genetic variation on the livestock immune response to pathogens","funder_award_id":"BBS/E/I/00001710","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6845131987","display_name":null,"funder_award_id":"HHSN272201200010C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8498315847","display_name":null,"funder_award_id":"BBS/E/I/00001710","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2237812244.pdf","grobid_xml":"https://content.openalex.org/works/W2237812244.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2020718817","https://openalex.org/W2025729280","https://openalex.org/W2053707749","https://openalex.org/W2061231608","https://openalex.org/W2096525273","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2113142309","https://openalex.org/W2130195070","https://openalex.org/W2142096740","https://openalex.org/W2149378423","https://openalex.org/W2168120333","https://openalex.org/W2237812244","https://openalex.org/W2394984303","https://openalex.org/W2399211273","https://openalex.org/W4250297812","https://openalex.org/W6711558577"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W1993728705","https://openalex.org/W2177756217","https://openalex.org/W17824240"],"abstract_inverted_index":{"BACKGROUND:":[0],"MHC":[1,34,55,70,78,90,112,132,150],"molecules":[2,79,113,151],"are":[3],"a":[4,12,38,67,153],"highly":[5],"diverse":[6],"family":[7],"of":[8,33,169],"proteins":[9],"that":[10],"play":[11],"key":[13],"role":[14],"in":[15,37,58],"cellular":[16],"immune":[17,40],"recognition.":[18],"Over":[19],"time,":[20],"different":[21,48,98],"techniques":[22],"and":[23,72,124,127,155,163],"terminologies":[24],"have":[25],"been":[26],"developed":[27],"to":[28,76,83,101,114,171],"identify":[29,102],"the":[30,144],"specific":[31,39],"type(s)":[32],"molecule":[35],"involved":[36],"recognition":[41],"context.":[42],"No":[43],"consistent":[44],"nomenclature":[45],"exists":[46],"across":[47],"vertebrate":[49],"species.":[50],"PURPOSE:":[51],"To":[52],"correctly":[53],"represent":[54,77],"related":[56],"data":[57],"The":[59],"Immune":[60],"Epitope":[61],"Database":[62],"(IEDB),":[63],"we":[64],"built":[65],"upon":[66],"previously":[68],"established":[69],"ontology":[71,75,88,161,174],"created":[73],"an":[74,167],"as":[80,105,166],"they":[81],"relate":[82],"immunological":[84],"experiments.":[85],"DESCRIPTION:":[86],"This":[87],"models":[89],"protein":[91,122],"chains":[92,123],"from":[93,143],"16":[94],"species,":[95],"deals":[96],"with":[97],"approaches":[99],"used":[100],"MHC,":[103],"such":[104],"direct":[106],"sequencing":[107],"verses":[108],"serotyping,":[109],"relates":[110],"engineered":[111],"naturally":[115],"occurring":[116],"ones,":[117],"connects":[118],"genetic":[119],"loci,":[120],"alleles,":[121],"multi-chain":[125],"proteins,":[126],"establishes":[128],"evidence":[129],"codes":[130],"for":[131,160],"restriction.":[133],"Where":[134],"available,":[135],"this":[136],"work":[137],"is":[138],"based":[139],"on":[140],"existing":[141],"ontologies":[142],"OBO":[145],"foundry.":[146],"CONCLUSIONS:":[147],"Overall,":[148],"representing":[149],"provides":[152],"challenging":[154],"practically":[156],"important":[157],"test":[158],"case":[159],"building,":[162],"could":[164],"serve":[165],"example":[168],"how":[170],"integrate":[172],"other":[173],"building":[175],"efforts":[176],"into":[177],"web":[178],"resources.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":9}],"updated_date":"2026-07-01T08:55:40.977307","created_date":"2016-06-24T00:00:00"}
