{"id":"https://openalex.org/W2228514487","doi":"https://doi.org/10.1186/s13326-015-0040-2","title":"Special issue on bio-ontologies and phenotypes","display_name":"Special issue on bio-ontologies and phenotypes","publication_year":2015,"publication_date":"2015-12-01","ids":{"openalex":"https://openalex.org/W2228514487","doi":"https://doi.org/10.1186/s13326-015-0040-2","mag":"2228514487","pmid":"https://pubmed.ncbi.nlm.nih.gov/26682035"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-015-0040-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0040-2","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-015-0040-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-015-0040-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022052915","display_name":"Larisa Soldatova","orcid":"https://orcid.org/0000-0001-6489-3029"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Larisa N. Soldatova","raw_affiliation_strings":["Brunel University, London, UK"],"affiliations":[{"raw_affiliation_string":"Brunel University, London, UK","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073413742","display_name":"Nigel Collier","orcid":"https://orcid.org/0000-0002-7230-4164"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nigel Collier","raw_affiliation_strings":["The University of Cambridge, Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"The University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012061875","display_name":"Anika Oellrich","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anika Oellrich","raw_affiliation_strings":["The Wellcome Trust Sanger Institute, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"The Wellcome Trust Sanger Institute, Hinxton, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011041769","display_name":"Tudor Groza","orcid":"https://orcid.org/0000-0003-2267-8333"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tudor Groza","raw_affiliation_strings":["The Garvan Institute of Medical Research, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"The Garvan Institute of Medical Research, Sydney, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067214173","display_name":"Karin Verspoor","orcid":"https://orcid.org/0000-0002-8661-1544"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Karin Verspoor","raw_affiliation_strings":["The University of Melbourne, Melbourne, Australia"],"affiliations":[{"raw_affiliation_string":"The University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018395535","display_name":"Philippe Rocca\u2010Serra","orcid":"https://orcid.org/0000-0001-9853-5668"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Philippe Rocca-Serra","raw_affiliation_strings":["The University of Oxford, Oxford e-Research Centre, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"The University of Oxford, Oxford e-Research Centre, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044836472","display_name":"Michel Dumontier","orcid":"https://orcid.org/0000-0003-4727-9435"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michel Dumontier","raw_affiliation_strings":["Stanford University, Stanford, CA USA","Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nigam H. Shah","raw_affiliation_strings":["Stanford University, Stanford, CA USA","Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5022052915"],"corresponding_institution_ids":["https://openalex.org/I59433898"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1202,"currency":"EUR","value_usd":1296},"fwci":0.1506,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5775567,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"6","issue":"1","first_page":"40","last_page":"40"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.748162567615509},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5121378898620605},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.49049538373947144},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33429139852523804},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.06580767035484314}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.748162567615509},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5121378898620605},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.49049538373947144},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33429139852523804},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.06580767035484314},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s13326-015-0040-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0040-2","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-015-0040-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:26682035","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26682035","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/050ec62c-dadf-4640-9088-4e017dd434c5","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/050ec62c-dadf-4640-9088-4e017dd434c5","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Soldatova, L N, Collier, N, Oellrich, A, Groza, T, Verspoor, K, Rocca-Serra, P, Dumontier, M & Shah, N H 2015, 'Special issue on bio-ontologies and phenotypes', Journal of biomedical semantics, vol. 6, no. 1, 40. https://doi.org/10.1186/s13326-015-0040-2","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/58235","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/58235","pdf_url":"http://hdl.handle.net/11343/58235","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3658344","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4682270","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-015-0040-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0040-2","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-015-0040-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G7009347466","display_name":null,"funder_award_id":"MR/M025160/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2228514487.pdf","grobid_xml":"https://content.openalex.org/works/W2228514487.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W618046730","https://openalex.org/W1983141380","https://openalex.org/W2070137602","https://openalex.org/W2073098720","https://openalex.org/W2123808048","https://openalex.org/W2129815541","https://openalex.org/W2143185181","https://openalex.org/W2150829627","https://openalex.org/W2152850487","https://openalex.org/W2157310614"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"The":[0,38],"bio-ontologies":[1],"and":[2,22,51,60,71],"phenotypes":[3],"special":[4],"issue":[5],"includes":[6],"eight":[7],"papers":[8,13,40],"selected":[9,39],"from":[10],"the":[11,16,23,48,61],"11":[12],"presented":[14],"at":[15,26],"Bio-Ontologies":[17],"SIG":[18],"(Special":[19],"Interest":[20],"Group)":[21],"Phenotype":[24],"Day":[25],"ISMB":[27],"(Intelligent":[28],"Systems":[29],"for":[30],"Molecular":[31],"Biology)":[32],"conference":[33],"in":[34,36],"Boston":[35],"2014.":[37],"span":[41],"a":[42],"wide":[43],"range":[44],"of":[45,53,57,64],"topics":[46],"including":[47],"automated":[49],"re-use":[50],"update":[52],"ontologies,":[54],"quality":[55],"assessment":[56],"ontological":[58],"resources,":[59],"systematic":[62],"description":[63],"phenotype":[65],"variation,":[66],"driven":[67],"by":[68],"manual,":[69],"semi-":[70],"fully":[72],"automatic":[73],"means.":[74]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
