{"id":"https://openalex.org/W1871552400","doi":"https://doi.org/10.1186/s13326-015-0038-9","title":"RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource","display_name":"RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource","publication_year":2015,"publication_date":"2015-10-23","ids":{"openalex":"https://openalex.org/W1871552400","doi":"https://doi.org/10.1186/s13326-015-0038-9","mag":"1871552400","pmid":"https://pubmed.ncbi.nlm.nih.gov/26500754"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-015-0038-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0038-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0038-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0038-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021255484","display_name":"Jesse C. J. van Dam","orcid":"https://orcid.org/0000-0001-9395-5559"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Jesse CJ van Dam","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028433887","display_name":"Jasper J. Koehorst","orcid":"https://orcid.org/0000-0001-8172-8981"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jasper J Koehorst","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073898339","display_name":"Peter J. Schaap","orcid":"https://orcid.org/0000-0002-4346-6084"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter J Schaap","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039324414","display_name":"V\u00edtor A. P. Martins dos Santos","orcid":"https://orcid.org/0000-0002-2352-9017"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Vitor AP Martins dos Santos","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands ; LifeGlimmer, GmbH, Markelstrasse 38, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands ; LifeGlimmer, GmbH, Markelstrasse 38, Berlin, Germany","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041170743","display_name":"Mar\u00eda Su\u00e1rez\u2010Diez","orcid":"https://orcid.org/0000-0001-5845-146X"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Maria Suarez-Diez","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5021255484"],"corresponding_institution_ids":["https://openalex.org/I913481162"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":3.1159,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.92594228,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"6","issue":"1","first_page":"39","last_page":"39"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.5436999797821045,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.5436999797821045,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.23899999260902405,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.06459999829530716,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.9078267812728882},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8901983499526978},{"id":"https://openalex.org/keywords/rdf-schema","display_name":"RDF Schema","score":0.7681248188018799},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6783419251441956},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6748489141464233},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.6543068885803223},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.598555326461792},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.5972968339920044},{"id":"https://openalex.org/keywords/simple-knowledge-organization-system","display_name":"Simple Knowledge Organization System","score":0.5806179642677307},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.45734143257141113},{"id":"https://openalex.org/keywords/semantic-heterogeneity","display_name":"Semantic heterogeneity","score":0.43722057342529297},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.4305826723575592},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3980928957462311},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36876702308654785},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.346868097782135},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.223781019449234},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.09342396259307861}],"concepts":[{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.9078267812728882},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8901983499526978},{"id":"https://openalex.org/C15657843","wikidata":"https://www.wikidata.org/wiki/Q1751819","display_name":"RDF Schema","level":5,"score":0.7681248188018799},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6783419251441956},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6748489141464233},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.6543068885803223},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.598555326461792},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.5972968339920044},{"id":"https://openalex.org/C29321653","wikidata":"https://www.wikidata.org/wiki/Q2288360","display_name":"Simple Knowledge Organization System","level":5,"score":0.5806179642677307},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.45734143257141113},{"id":"https://openalex.org/C2778180026","wikidata":"https://www.wikidata.org/wiki/Q18378163","display_name":"Semantic heterogeneity","level":4,"score":0.43722057342529297},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.4305826723575592},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3980928957462311},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36876702308654785},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.346868097782135},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.223781019449234},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.09342396259307861},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-015-0038-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0038-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0038-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:26500754","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26500754","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:europepmc.org:3588116","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4619317","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/492963","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/rdf2graph-a-tool-to-recover-understand-and-validate-the-ontology-","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 6","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s13326-015-0038-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0038-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0038-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G635427863","display_name":"Improving Outcome of Necrotizing Fasciitis: Elucidation of Complex Host and Pathogen Signatures that Dictate Severity of Tissue Infection","funder_award_id":"305340","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1871552400.pdf","grobid_xml":"https://content.openalex.org/works/W1871552400.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W67174364","https://openalex.org/W1989277387","https://openalex.org/W1989521494","https://openalex.org/W1990662002","https://openalex.org/W2018518196","https://openalex.org/W2065137317","https://openalex.org/W2072692971","https://openalex.org/W2075694192","https://openalex.org/W2084292968","https://openalex.org/W2103017472","https://openalex.org/W2113310608","https://openalex.org/W2126007557","https://openalex.org/W2131816369","https://openalex.org/W2132590878","https://openalex.org/W2140611297","https://openalex.org/W2154687603","https://openalex.org/W2155142785","https://openalex.org/W2155249637","https://openalex.org/W2164461702","https://openalex.org/W2165428180","https://openalex.org/W2184417913","https://openalex.org/W2242459625","https://openalex.org/W2396398230","https://openalex.org/W2397264460","https://openalex.org/W2400806645","https://openalex.org/W2739999456","https://openalex.org/W4237335579","https://openalex.org/W4242729757"],"related_works":["https://openalex.org/W3082761338","https://openalex.org/W2602535883","https://openalex.org/W3171256892","https://openalex.org/W2563388676","https://openalex.org/W4296056063","https://openalex.org/W2079781157","https://openalex.org/W4301152651","https://openalex.org/W2476635466","https://openalex.org/W4327990","https://openalex.org/W4206665951"],"abstract_inverted_index":{"BACKGROUND:":[0],"Semantic":[1],"web":[2,139],"technologies":[3],"have":[4],"a":[5,74],"tremendous":[6],"potential":[7],"for":[8],"the":[9,28,79,106,137],"integration":[10],"of":[11,19,42,81,108,124,136],"heterogeneous":[12],"data":[13,30],"sets.":[14],"Therefore,":[15],"an":[16,82],"increasing":[17],"number":[18],"widely":[20],"used":[21],"biological":[22],"resources":[23,54,95,127],"are":[24,33,48],"becoming":[25],"available":[26,37],"in":[27,132],"RDF":[29,83,119],"model.":[31],"There":[32],"however,":[34],"no":[35],"tools":[36],"that":[38,76],"provide":[39],"structural":[40,46,59],"overviews":[41,47],"these":[43,53,94],"resources.":[44,102,120],"Such":[45],"essential":[49],"to":[50,56,89,97,114],"efficiently":[51],"query":[52],"and":[55,61,67,96,128],"assess":[57],"their":[58,65],"integrity":[60],"design,":[62],"thereby":[63,111],"strengthening":[64],"use":[66],"potential.":[68],"RESULTS:":[69],"Here":[70],"we":[71],"present":[72],"RDF2Graph,":[73],"tool":[75],"automatically":[77],"recovers":[78],"structure":[80],"resource.":[84],"The":[85],"generated":[86],"overview":[87],"allows":[88],"create":[90],"complex":[91,109],"queries":[92,110],"on":[93],"structurally":[98],"validate":[99],"newly":[100],"created":[101],"CONCLUSION:":[103],"RDF2Graph":[104,121],"facilitates":[105,122],"creation":[107,123],"enabling":[112],"access":[113],"knowledge":[115],"stored":[116],"across":[117],"multiple":[118],"high":[125],"quality":[126],"resource":[129],"descriptions,":[130],"which":[131],"turn":[133],"increases":[134],"usability":[135],"semantic":[138],"technologies.":[140]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}