{"id":"https://openalex.org/W1935348821","doi":"https://doi.org/10.1186/s13326-015-0030-4","title":"Improving the Sequence Ontology terminology for genomic variant annotation","display_name":"Improving the Sequence Ontology terminology for genomic variant annotation","publication_year":2015,"publication_date":"2015-07-30","ids":{"openalex":"https://openalex.org/W1935348821","doi":"https://doi.org/10.1186/s13326-015-0030-4","mag":"1935348821","pmid":"https://pubmed.ncbi.nlm.nih.gov/26229585"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-015-0030-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0030-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0030-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0030-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007575726","display_name":"Fiona Cunningham","orcid":"https://orcid.org/0000-0002-7445-2419"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fiona Cunningham","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK","European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050295401","display_name":"Barry Moore","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barry Moore","raw_affiliation_strings":["Department of Human Genetics, University of Utah, Salt Lake City, UT USA","Department of Human Genetics, University of Utah, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of Utah, Salt Lake City, UT USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Department of Human Genetics, University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027110009","display_name":"Nicole Ruiz-Schultz","orcid":"https://orcid.org/0000-0003-1774-6629"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicole Ruiz-Schultz","raw_affiliation_strings":["Department of Biomedical Informatics, University of Utah, Salt Lake City, UT USA","Department of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Utah, Salt Lake City, UT USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043702825","display_name":"Graham R. S. Ritchie","orcid":"https://orcid.org/0000-0002-6456-9736"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Graham RS Ritchie","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK ; Wellcome Trust Sanger Institute, Hinxton, Cambridge UK","European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK ; Wellcome Trust Sanger Institute, Hinxton, Cambridge UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I2802476451"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014696304","display_name":"Karen Eilbeck","orcid":"https://orcid.org/0000-0002-0831-6427"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Karen Eilbeck","raw_affiliation_strings":["Department of Biomedical Informatics, University of Utah, Salt Lake City, UT USA","Department of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Utah, Salt Lake City, UT USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5014696304"],"corresponding_institution_ids":["https://openalex.org/I223532165"],"apc_list":{"value":1590,"currency":"USD","value_usd":1590},"apc_paid":{"value":1590,"currency":"USD","value_usd":1590},"fwci":3.6197,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.93155247,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"32","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.7563999891281128,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.7563999891281128,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2110999971628189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7943684458732605},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6565655469894409},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.6279687881469727},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5807187557220459},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5271776914596558},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5029451251029968},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43872392177581787},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40123751759529114},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34792256355285645},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33636513352394104},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2465921938419342},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16533368825912476},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13700807094573975},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.07459366321563721}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7943684458732605},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6565655469894409},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.6279687881469727},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5807187557220459},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5271776914596558},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5029451251029968},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43872392177581787},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40123751759529114},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34792256355285645},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33636513352394104},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2465921938419342},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16533368825912476},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13700807094573975},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.07459366321563721},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13326-015-0030-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0030-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0030-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:26229585","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26229585","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3495385","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4520272","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-015-0030-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0030-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0030-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1114957803","display_name":null,"funder_award_id":"U41 HG007823","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G119964413","display_name":null,"funder_award_id":"FP7/2007\u20132013","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G1243730289","display_name":"Ensembl","funder_award_id":"095908","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G1351128580","display_name":null,"funder_award_id":"R01HG004341","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G1623698995","display_name":null,"funder_award_id":"U41 HG007234","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G164986114","display_name":null,"funder_award_id":"BB/M020398/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G1774913744","display_name":null,"funder_award_id":"WT095908","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G2807848565","display_name":"A BLUEPRINT of Haematopoietic Epigenomes","funder_award_id":"282510","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3207356259","display_name":null,"funder_award_id":"2007\u20132013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3647390028","display_name":null,"funder_award_id":"BB/M018458/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G393177772","display_name":null,"funder_award_id":"FP7 2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4240609887","display_name":"Improving the rat reference genome annotation and building community engagement","funder_award_id":"BB/K009524/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4273736530","display_name":"Big Data Infrastructure for Crop Genomics","funder_award_id":"BB/M018458/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G443606298","display_name":null,"funder_award_id":"BB/L024225/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4461960948","display_name":null,"funder_award_id":"R01 HD074078","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G4612446324","display_name":null,"funder_award_id":"WT 098051","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G472452214","display_name":null,"funder_award_id":"BB/K009524/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G640079941","display_name":"ProteoGenomics: Dynamic Linkage of Genomes and Proteomes through Ensembl and ProteomeXchange","funder_award_id":"BB/L024225/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8348131788","display_name":"eHive-RPC: A Remote Procedure Call Public Interface for eHive","funder_award_id":"BB/M020398/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G838405879","display_name":null,"funder_award_id":"T15-LM007124","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8720148096","display_name":"Creating medically-driven integrative bioinformatics applications focused on oncology, CNS disorders and their comorbidities (MedBioinformatics)","funder_award_id":"634143","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1935348821.pdf","grobid_xml":"https://content.openalex.org/works/W1935348821.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1494567425","https://openalex.org/W2012480989","https://openalex.org/W2015885891","https://openalex.org/W2036210716","https://openalex.org/W2061596350","https://openalex.org/W2097986534","https://openalex.org/W2103166281","https://openalex.org/W2104570606","https://openalex.org/W2107133912","https://openalex.org/W2108234281","https://openalex.org/W2117608012","https://openalex.org/W2122732537","https://openalex.org/W2123171788","https://openalex.org/W2126209963","https://openalex.org/W2128177791","https://openalex.org/W2143602768","https://openalex.org/W2149992227","https://openalex.org/W2150761237","https://openalex.org/W2150934173","https://openalex.org/W2160344363","https://openalex.org/W2339359539","https://openalex.org/W2916083703","https://openalex.org/W4210290733","https://openalex.org/W6629658836"],"related_works":["https://openalex.org/W2350593162","https://openalex.org/W2390350206","https://openalex.org/W1969477129","https://openalex.org/W2921208823","https://openalex.org/W2131808775","https://openalex.org/W2353483812","https://openalex.org/W2130038259","https://openalex.org/W2360756181","https://openalex.org/W2374093222","https://openalex.org/W3154008094"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,18,41,117],"Genome":[2],"Variant":[3],"Format":[4],"(GVF)":[5],"uses":[6],"the":[7,24,29,36,39,46,50,65,69,76,93,103,112,124,148,153,157,160,163,194,197,202,221],"Sequence":[8,198],"Ontology":[9,199],"(SO)":[10],"to":[11,60,73,95,122,151,196,200],"enable":[12],"detailed":[13],"annotation":[14,19,236],"of":[15,26,38,78,84,105,131,155,159,171,176,204,215,233],"sequence":[16,27,79,143],"variation.":[17],"includes":[20],"SO":[21,42,66,94,149,187],"terms":[22,62,100],"for":[23],"type":[25],"alteration,":[28,156],"genomic":[30,86,109],"features":[31,110],"that":[32,101],"are":[33,168],"changed":[34],"and":[35,44,48,91,97,136,162,173,220],"effect":[37,104,158,177,203],"alteration.":[40],"maintains":[43],"updates":[45,195],"specification":[47],"provides":[49],"underlying":[51],"ontologicial":[52],"structure.":[53],"METHODS:":[54],"A":[55,138],"requirements":[56],"analysis":[57],"was":[58,120,145],"undertaken":[59],"gather":[61],"missing":[63],"in":[64,111,179],"release":[67],"at":[68],"time,":[70],"but":[71],"needed":[72],"adequately":[74],"describe":[75,102,201],"effects":[77],"alteration":[80,161,172],"on":[81,206],"a":[82,129,213,230],"set":[83,130,214],"variant":[85],"annotations.":[87],"We":[88,192,210,226],"have":[89,211,227],"extended":[90],"remodeled":[92],"include":[96],"define":[98],"all":[99],"variation":[106,114,205],"upon":[107],"reference":[108,126,164,208],"Ensembl":[113],"databases.":[115],"RESULTS:":[116],"new":[118],"terminology":[119,150],"used":[121],"annotate":[123,152],"human":[125],"genome":[127],"with":[128],"variants":[132],"from":[133],"both":[134],"COSMIC":[135],"dbSNP.":[137],"GVF":[139,224],"file":[140],"containing":[141],"170,853":[142],"alterations":[144],"generated":[146],"using":[147,217],"kinds":[154,170,175],"feature":[165],"changed.":[166],"There":[167],"four":[169],"24":[174],"seen":[178],"this":[180,218,234],"dataset.":[181,237],"(Ensembl":[182],"Variation":[183],"annotates":[184],"34":[185],"different":[186],"consequence":[188],"terms:":[189],"http://www.ensembl.org/info/docs/variation/predicted_data.html).":[190],"CONCLUSIONS:":[191],"explain":[193],"existing":[207],"features.":[209],"provided":[212,229],"annotations":[216],"terminology,":[219],"well":[222],"defined":[223],"specification.":[225],"also":[228],"provisional":[231],"exploration":[232],"large":[235]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":9},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":6}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
