{"id":"https://openalex.org/W1601319729","doi":"https://doi.org/10.1186/s13326-015-0026-0","title":"Ambiguity and variability of database and software names in bioinformatics","display_name":"Ambiguity and variability of database and software names in bioinformatics","publication_year":2015,"publication_date":"2015-06-13","ids":{"openalex":"https://openalex.org/W1601319729","doi":"https://doi.org/10.1186/s13326-015-0026-0","mag":"1601319729","pmid":"https://pubmed.ncbi.nlm.nih.gov/26131352"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-015-0026-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0026-0","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0026-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0026-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022248114","display_name":"Geraint Duck","orcid":"https://orcid.org/0000-0002-1002-4458"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Geraint Duck","raw_affiliation_strings":["School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK","School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049040748","display_name":"Aleksandar Kova\u010devi\u0107","orcid":"https://orcid.org/0000-0002-8342-9333"},"institutions":[{"id":"https://openalex.org/I170726198","display_name":"University of Novi Sad","ror":"https://ror.org/00xa57a59","country_code":"RS","type":"education","lineage":["https://openalex.org/I170726198"]}],"countries":["RS"],"is_corresponding":false,"raw_author_name":"Aleksandar Kovacevic","raw_affiliation_strings":["Faculty of Technical Sciences, University of Novi Sad, Novi Sad, Serbia"],"affiliations":[{"raw_affiliation_string":"Faculty of Technical Sciences, University of Novi Sad, Novi Sad, Serbia","institution_ids":["https://openalex.org/I170726198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082064376","display_name":"David L. Robertson","orcid":"https://orcid.org/0000-0001-6338-0221"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David L. Robertson","raw_affiliation_strings":["Computational and Evolutionary Biology, Faculty of Life Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT UK","Computational and Evolutionary Biology, Faculty of Life Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK"],"affiliations":[{"raw_affiliation_string":"Computational and Evolutionary Biology, Faculty of Life Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT UK","institution_ids":[]},{"raw_affiliation_string":"Computational and Evolutionary Biology, Faculty of Life Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Stevens","raw_affiliation_strings":["School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK","School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005912060","display_name":"Goran Nenadi\u0107","orcid":"https://orcid.org/0000-0003-0795-5363"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Goran Nenadic","raw_affiliation_strings":["School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK ; Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN UK","Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK ; Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN UK","institution_ids":[]},{"raw_affiliation_string":"Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5005912060"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1197,"currency":"EUR","value_usd":1290},"fwci":0.4519,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.64883581,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"6","issue":"1","first_page":"29","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8635353446006775},{"id":"https://openalex.org/keywords/ambiguity","display_name":"Ambiguity","score":0.7578839659690857},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6919630169868469},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6126738786697388},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5795779228210449},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5777834057807922},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.577102541923523},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5682815313339233},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.46087342500686646},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4071428179740906},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.402662068605423},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3796200156211853},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3785916864871979}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8635353446006775},{"id":"https://openalex.org/C2780522230","wikidata":"https://www.wikidata.org/wiki/Q1140419","display_name":"Ambiguity","level":2,"score":0.7578839659690857},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6919630169868469},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6126738786697388},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5795779228210449},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5777834057807922},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.577102541923523},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5682815313339233},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.46087342500686646},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4071428179740906},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.402662068605423},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3796200156211853},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3785916864871979},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13326-015-0026-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0026-0","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0026-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:26131352","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26131352","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/dd026a12-fa1c-4cf8-9f87-934e4f36c739","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/dd026a12-fa1c-4cf8-9f87-934e4f36c739","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Duck, G, Kovacevic, A, Robertson, D L, Stevens, R & Nenadic, G 2015, 'Ambiguity and variability of database and software names in bioinformatics', Journal of Biomedical Semantics, vol. 6, 29. https://doi.org/10.1186/s13326-015-0026-0","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:eprints.gla.ac.uk:152112","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:4485340","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4485340","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-015-0026-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0026-0","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0026-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1601319729.pdf","grobid_xml":"https://content.openalex.org/works/W1601319729.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1508977358","https://openalex.org/W1601319729","https://openalex.org/W1692319794","https://openalex.org/W1977289091","https://openalex.org/W2029017735","https://openalex.org/W2033263730","https://openalex.org/W2037524964","https://openalex.org/W2040899072","https://openalex.org/W2055043387","https://openalex.org/W2068737686","https://openalex.org/W2071296046","https://openalex.org/W2085277871","https://openalex.org/W2091898001","https://openalex.org/W2094591616","https://openalex.org/W2095896451","https://openalex.org/W2097606805","https://openalex.org/W2099369363","https://openalex.org/W2100627415","https://openalex.org/W2101265630","https://openalex.org/W2101410543","https://openalex.org/W2103017472","https://openalex.org/W2106808814","https://openalex.org/W2114420708","https://openalex.org/W2114857923","https://openalex.org/W2116398954","https://openalex.org/W2126276057","https://openalex.org/W2132246391","https://openalex.org/W2135663335","https://openalex.org/W2147533449","https://openalex.org/W2147880316","https://openalex.org/W2156467546","https://openalex.org/W2160697532","https://openalex.org/W2167064640","https://openalex.org/W2169918010","https://openalex.org/W2180878254","https://openalex.org/W2310083561","https://openalex.org/W2586281911","https://openalex.org/W2911331535","https://openalex.org/W2915827701","https://openalex.org/W3200692722","https://openalex.org/W4233334497","https://openalex.org/W4246576797","https://openalex.org/W6674783156","https://openalex.org/W7062434573"],"related_works":["https://openalex.org/W2353179089","https://openalex.org/W2923538289","https://openalex.org/W2353125546","https://openalex.org/W2470643824","https://openalex.org/W2349635380","https://openalex.org/W4353089801","https://openalex.org/W2353819554","https://openalex.org/W2359488321","https://openalex.org/W2389866386","https://openalex.org/W2905116230"],"abstract_inverted_index":{"Our":[0],"analyses":[1],"show":[2],"that":[3,15],"identification":[4],"of":[5,7,50],"mentions":[6],"databases":[8],"and":[9,31],"tools":[10],"is":[11],"a":[12,47],"challenging":[13],"task":[14],"cannot":[16],"be":[17,41],"achieved":[18],"by":[19],"relying":[20],"on":[21],"current":[22],"manually-curated":[23],"resource":[24],"repositories.":[25],"Although":[26],"machine":[27],"learning":[28],"shows":[29],"improvement":[30],"promise":[32],"(primarily":[33],"in":[34],"precision),":[35],"more":[36],"contextual":[37],"information":[38],"needs":[39],"to":[40,45],"taken":[42],"into":[43],"account":[44],"achieve":[46],"good":[48],"degree":[49],"accuracy.":[51]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
