{"id":"https://openalex.org/W2168110565","doi":"https://doi.org/10.1186/s13326-015-0023-3","title":"Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts","display_name":"Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts","publication_year":2015,"publication_date":"2015-05-06","ids":{"openalex":"https://openalex.org/W2168110565","doi":"https://doi.org/10.1186/s13326-015-0023-3","mag":"2168110565","pmid":"https://pubmed.ncbi.nlm.nih.gov/25992265"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-015-0023-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0023-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0023-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0023-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077778998","display_name":"Peggy Cellier","orcid":"https://orcid.org/0000-0002-1495-2534"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Peggy Cellier","raw_affiliation_strings":["INSA de Rennes, IRISA, UMR6074, Rennes, F-35042 France","Logical Information Systems"],"affiliations":[{"raw_affiliation_string":"INSA de Rennes, IRISA, UMR6074, Rennes, F-35042 France","institution_ids":[]},{"raw_affiliation_string":"Logical Information Systems","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082046316","display_name":"Thierry Charnois","orcid":"https://orcid.org/0000-0001-9700-5075"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thierry Charnois","raw_affiliation_strings":["Universit\u00e9 de Paris 13, LIPN, UMR7030, Villetaneuse, F-93430 France","Laboratoire d'Informatique de Paris-Nord"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Paris 13, LIPN, UMR7030, Villetaneuse, F-93430 France","institution_ids":[]},{"raw_affiliation_string":"Laboratoire d'Informatique de Paris-Nord","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028434928","display_name":"Marc Plantevit","orcid":"https://orcid.org/0000-0003-4636-5753"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marc Plantevit","raw_affiliation_strings":["Universit\u00e9 Lyon 1, LIRIS, UMR5205, Lyon, F-69622 France","Data Mining and Machine Learning"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1, LIRIS, UMR5205, Lyon, F-69622 France","institution_ids":[]},{"raw_affiliation_string":"Data Mining and Machine Learning","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015567447","display_name":"Christophe Rigotti","orcid":"https://orcid.org/0000-0003-1265-1479"},"institutions":[{"id":"https://openalex.org/I4210155607","display_name":"Laboratoire d'Informatique en Images et Syst\u00e8mes d'Information","ror":"https://ror.org/04dv4he91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I188626449","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210155607","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Rigotti","raw_affiliation_strings":["INSA de Lyon, LIRIS, UMR5205, Lyon, F-69621 France","Data Mining and Machine Learning","Artificial Evolution and Computational Biology","Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information"],"affiliations":[{"raw_affiliation_string":"INSA de Lyon, LIRIS, UMR5205, Lyon, F-69621 France","institution_ids":[]},{"raw_affiliation_string":"Data Mining and Machine Learning","institution_ids":[]},{"raw_affiliation_string":"Artificial Evolution and Computational Biology","institution_ids":[]},{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information","institution_ids":["https://openalex.org/I4210155607"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108119396","display_name":"Bruno Cr\u00e9milleux","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139483","display_name":"GREYC","ror":"https://ror.org/043749971","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I194210350","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210139483","https://openalex.org/I4210159245","https://openalex.org/I98702875"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bruno Cr\u00e9milleux","raw_affiliation_strings":["Universit\u00e9 de Caen, GREYC, UMR6072, Caen, F-14032 France","Equipe CODAG - Laboratoire GREYC - UMR6072"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Caen, GREYC, UMR6072, Caen, F-14032 France","institution_ids":[]},{"raw_affiliation_string":"Equipe CODAG - Laboratoire GREYC - UMR6072","institution_ids":["https://openalex.org/I4210139483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089245484","display_name":"Olivier Gandrillon","orcid":"https://orcid.org/0000-0002-3676-6513"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Olivier Gandrillon","raw_affiliation_strings":["Universit\u00e9 Lyon 1, CGMC, UMR5534, Lyon, F-69622 France","Multi-scale modelling of cell dynamics : application to hematopoiesis"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1, CGMC, UMR5534, Lyon, F-69622 France","institution_ids":[]},{"raw_affiliation_string":"Multi-scale modelling of cell dynamics : application to hematopoiesis","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080019407","display_name":"J\u01d0\u0155\u0131 Kl\u00e9ma","orcid":"https://orcid.org/0000-0003-1753-9435"},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ji\u0159\u00ed Kl\u00e9ma","raw_affiliation_strings":["Faculty of Electrical Engineering, Czech Technical University, Prague, Czech Republic","Czech Technical University in Prague"],"affiliations":[{"raw_affiliation_string":"Faculty of Electrical Engineering, Czech Technical University, Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]},{"raw_affiliation_string":"Czech Technical University in Prague","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040653798","display_name":"Jean-Luc Manguin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139483","display_name":"GREYC","ror":"https://ror.org/043749971","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I194210350","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210139483","https://openalex.org/I4210159245","https://openalex.org/I98702875"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Luc Manguin","raw_affiliation_strings":["Universit\u00e9 de Caen, GREYC, UMR6072, Caen, F-14032 France","Equipe CODAG - Laboratoire GREYC - UMR6072"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Caen, GREYC, UMR6072, Caen, F-14032 France","institution_ids":[]},{"raw_affiliation_string":"Equipe CODAG - Laboratoire GREYC - UMR6072","institution_ids":["https://openalex.org/I4210139483"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5077778998"],"corresponding_institution_ids":[],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1168,"currency":"EUR","value_usd":1259},"fwci":0.4527,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.66407653,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"6","issue":"1","first_page":"27","last_page":"27"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8399195671081543},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5921560525894165},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5597629547119141},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.5174563527107239},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4703172743320465},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4364576041698456},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.42079389095306396},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4179125726222992},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40771520137786865},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.3849780857563019},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09808361530303955}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8399195671081543},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5921560525894165},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5597629547119141},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.5174563527107239},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4703172743320465},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4364576041698456},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.42079389095306396},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4179125726222992},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40771520137786865},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.3849780857563019},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09808361530303955},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-015-0023-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0023-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0023-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25992265","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25992265","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:HAL:hal-01192959v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01192959","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1186/s13326-015-0023-3","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:4436157","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4436157","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-015-0023-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0023-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0023-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8500000238418579,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2339331049","display_name":null,"funder_award_id":"ANR-10-LABX-0083","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3335229504","display_name":null,"funder_award_id":"Avenir","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5549440890","display_name":null,"funder_award_id":"ANR-10-LAB","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168110565.pdf","grobid_xml":"https://content.openalex.org/works/W2168110565.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W174568167","https://openalex.org/W1215407688","https://openalex.org/W1493270114","https://openalex.org/W1500902855","https://openalex.org/W1501066065","https://openalex.org/W1551402844","https://openalex.org/W1597797979","https://openalex.org/W1601529450","https://openalex.org/W1608194207","https://openalex.org/W1641039719","https://openalex.org/W1850865022","https://openalex.org/W1940315767","https://openalex.org/W1971886065","https://openalex.org/W1973352244","https://openalex.org/W1990343723","https://openalex.org/W1991983805","https://openalex.org/W2003681585","https://openalex.org/W2048059249","https://openalex.org/W2064030835","https://openalex.org/W2068737686","https://openalex.org/W2085638007","https://openalex.org/W2091803989","https://openalex.org/W2097960255","https://openalex.org/W2099369363","https://openalex.org/W2100176599","https://openalex.org/W2103448252","https://openalex.org/W2110871096","https://openalex.org/W2111727122","https://openalex.org/W2120433106","https://openalex.org/W2121844933","https://openalex.org/W2122182354","https://openalex.org/W2123036291","https://openalex.org/W2127976940","https://openalex.org/W2132288458","https://openalex.org/W2141985222","https://openalex.org/W2147154106","https://openalex.org/W2147694185","https://openalex.org/W2148004186","https://openalex.org/W2148693963","https://openalex.org/W2158454296","https://openalex.org/W2163980860","https://openalex.org/W2166474856","https://openalex.org/W2168091548","https://openalex.org/W2237868473","https://openalex.org/W2498855697","https://openalex.org/W2582765108","https://openalex.org/W2998778915","https://openalex.org/W4251697274","https://openalex.org/W6675462168","https://openalex.org/W6681989899"],"related_works":["https://openalex.org/W3004288456","https://openalex.org/W4362496998","https://openalex.org/W2184397297","https://openalex.org/W3185751515","https://openalex.org/W1479703980","https://openalex.org/W2749535755","https://openalex.org/W2810079151","https://openalex.org/W1663435917","https://openalex.org/W1496929818","https://openalex.org/W2094989391"],"abstract_inverted_index":{"Experiments":[0],"show":[1],"how":[2],"our":[3,16],"approach":[4],"enables":[5],"to":[6],"discover":[7],"interactions":[8,26,35],"and":[9,27],"their":[10],"characterizations.":[11],"To":[12],"the":[13,25],"best":[14],"of":[15],"knowledge,":[17],"there":[18],"is":[19,49],"few":[20],"methods":[21],"that":[22],"automatically":[23],"extract":[24],"also":[28],"associated":[29],"semantics":[30],"information.":[31],"The":[32,47],"extracted":[33],"gene":[34],"from":[36],"PubMed":[37],"are":[38],"available":[39,50],"through":[40],"a":[41],"simple":[42],"web":[43],"interface":[44],"at":[45,51],"https://bingotexte.greyc.fr/.":[46],"software":[48],"https://bingo2.greyc.fr/?q=node/22.":[52]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}