{"id":"https://openalex.org/W2112563944","doi":"https://doi.org/10.1186/s13326-015-0014-4","title":"Annotation-based feature extraction from sets of SBML models","display_name":"Annotation-based feature extraction from sets of SBML models","publication_year":2015,"publication_date":"2015-04-14","ids":{"openalex":"https://openalex.org/W2112563944","doi":"https://doi.org/10.1186/s13326-015-0014-4","mag":"2112563944","pmid":"https://pubmed.ncbi.nlm.nih.gov/25904997"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-015-0014-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0014-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0014-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0014-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074431126","display_name":"Rebekka Alm","orcid":null},"institutions":[{"id":"https://openalex.org/I3019423309","display_name":"Fraunhofer Institute for Computer Graphics Research","ror":"https://ror.org/04gmsar03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I3019423309","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Rebekka Alm","raw_affiliation_strings":["Department of Multimedia Communication, University of Rostock, Joachim-Jungius-Str. 11, Rostock, 18051 Germany ; Fraunhofer Institute for Computer Graphics Research IGD, Joachim-Jungius-Str. 11, Rostock, 18059 Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Multimedia Communication, University of Rostock, Joachim-Jungius-Str. 11, Rostock, 18051 Germany ; Fraunhofer Institute for Computer Graphics Research IGD, Joachim-Jungius-Str. 11, Rostock, 18059 Germany","institution_ids":["https://openalex.org/I3019423309","https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103188993","display_name":"Dagmar Waltemath","orcid":"https://orcid.org/0000-0002-5886-5563"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dagmar Waltemath","raw_affiliation_strings":["Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstr. 69, Rostock, 18051 Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstr. 69, Rostock, 18051 Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068934423","display_name":"Markus Wolfien","orcid":"https://orcid.org/0000-0002-1887-4772"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus Wolfien","raw_affiliation_strings":["Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstr. 69, Rostock, 18051 Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstr. 69, Rostock, 18051 Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022724143","display_name":"Olaf Wolkenhauer","orcid":"https://orcid.org/0000-0001-6105-2937"},"institutions":[{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Olaf Wolkenhauer","raw_affiliation_strings":["Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstr. 69, Rostock, 18051 Germany ; Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstr. 69, Rostock, 18051 Germany ; Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029731037","display_name":"Ron Henkel","orcid":"https://orcid.org/0000-0001-6211-2719"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ron Henkel","raw_affiliation_strings":["Department of Mobile Multimedia Information Systems, University of Rostock, Albert-Einstein-Str. 22, Rostock, 18051 Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mobile Multimedia Information Systems, University of Rostock, Albert-Einstein-Str. 22, Rostock, 18051 Germany","institution_ids":["https://openalex.org/I4665924"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5074431126"],"corresponding_institution_ids":["https://openalex.org/I3019423309","https://openalex.org/I4665924"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":1.5149,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.82248205,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"6","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6132000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6132000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.10589999705553055,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.049400001764297485,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8646268844604492},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.7344285845756531},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6621716618537903},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6556457281112671},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5413737893104553},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5409977436065674},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5017104148864746},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4269790053367615},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29053640365600586},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.12543261051177979},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.09171271324157715},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.07898452877998352}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8646268844604492},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.7344285845756531},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6621716618537903},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6556457281112671},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5413737893104553},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5409977436065674},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5017104148864746},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4269790053367615},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29053640365600586},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.12543261051177979},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.09171271324157715},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.07898452877998352},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13326-015-0014-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0014-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0014-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25904997","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25904997","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:fraunhofer.de:N-343544","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-343544.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer IGD-R","raw_type":"article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/239884","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/239884","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4405863","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4405863","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:scholar.sun.ac.za:10019.1/99698","is_oa":false,"landing_page_url":"http://hdl.handle.net/10019.1/99698","pdf_url":null,"source":{"id":"https://openalex.org/S4306400300","display_name":"SUNScholar (Stellenbosch University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I26092322","host_organization_name":"Stellenbosch University","host_organization_lineage":["https://openalex.org/I26092322"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s13326-015-0014-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0014-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0014-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1564535905","display_name":null,"funder_award_id":"FKZ 031","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G353144647","display_name":null,"funder_award_id":"031 6194","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8547353928","display_name":null,"funder_award_id":"FKZ 031 6194","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2112563944.pdf","grobid_xml":"https://content.openalex.org/works/W2112563944.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W115536321","https://openalex.org/W134975705","https://openalex.org/W618046730","https://openalex.org/W1487060125","https://openalex.org/W1601038846","https://openalex.org/W1659833910","https://openalex.org/W1660390307","https://openalex.org/W1666352640","https://openalex.org/W1736008597","https://openalex.org/W1891372937","https://openalex.org/W1966203663","https://openalex.org/W1972863608","https://openalex.org/W1973919418","https://openalex.org/W1995594307","https://openalex.org/W2051739659","https://openalex.org/W2094951520","https://openalex.org/W2103017472","https://openalex.org/W2103333826","https://openalex.org/W2113218387","https://openalex.org/W2114124738","https://openalex.org/W2117805756","https://openalex.org/W2123457740","https://openalex.org/W2123604001","https://openalex.org/W2127950479","https://openalex.org/W2140611297","https://openalex.org/W2145435867","https://openalex.org/W2150908245","https://openalex.org/W2151690182","https://openalex.org/W2154268795","https://openalex.org/W2160751597","https://openalex.org/W2170122529","https://openalex.org/W2171926758","https://openalex.org/W2217176983","https://openalex.org/W2222512263","https://openalex.org/W2314100277","https://openalex.org/W2435251607","https://openalex.org/W2531563875","https://openalex.org/W2787894218","https://openalex.org/W2889443530","https://openalex.org/W4239557773"],"related_works":["https://openalex.org/W1892467659","https://openalex.org/W2362192218","https://openalex.org/W1529400504","https://openalex.org/W2381477132","https://openalex.org/W1867395701","https://openalex.org/W2377000990","https://openalex.org/W2004575302","https://openalex.org/W2357241418","https://openalex.org/W2386636980","https://openalex.org/W2393185060"],"abstract_inverted_index":{"BACKGROUND:":[0],"Model":[1],"repositories":[2],"such":[3,32],"as":[4,33,236],"BioModels":[5,116],"Database":[6],"provide":[7],"computational":[8],"models":[9,18,39,108],"of":[10,62,82,84,107,121,145,157,195,213,233],"biological":[11],"systems":[12],"for":[13,74,94,154,202,220,241],"the":[14,80,146,165,175,182,193,196,199,210,231],"scientific":[15],"community.":[16],"These":[17,64],"contain":[19],"rich":[20],"semantic":[21,53],"annotations":[22,54],"that":[23,52,142,181,188,209],"link":[24],"model":[25,67,75,99,167,177,203,221,234],"entities":[26],"to":[27,42,59,70,150,174,238],"concepts":[28,128,187,200,214],"in":[29,109,192,215],"well-established":[30],"bio-ontologies":[31],"Gene":[34,135],"Ontology.":[35],"Consequently,":[36],"thematically":[37],"similar":[38,44],"are":[40,55,148,171,189],"likely":[41],"share":[43],"annotations.":[45,204],"Based":[46],"on":[47,105,164,186],"this":[48,88],"assumption,":[49],"we":[50,90,124],"argue":[51],"a":[56],"suitable":[57,149],"tool":[58],"characterize":[60,119],"sets":[61,83,106,156],"models.":[63,85],"characteristics":[65],"improve":[66],"classification,":[68],"allow":[69],"identify":[71],"additional":[72],"features":[73,153,161,184],"retrieval":[76],"tasks,":[77],"and":[78,126,138,169,217],"enable":[79],"comparison":[81,232],"RESULTS:":[86],"In":[87],"paper":[89],"discuss":[91],"four":[92],"methods":[93,104,147,240],"annotation-based":[95],"feature":[96,228],"extraction":[97,229],"from":[98,115,129],"sets.":[100],"We":[101,140,179],"tested":[102],"all":[103],"SBML":[110],"format":[111],"which":[112],"were":[113],"composed":[114],"Database.":[117],"To":[118],"each":[120],"these":[122],"sets,":[123,235],"analyzed":[125],"extracted":[127],"three":[130,143],"frequently":[131],"used":[132,201],"ontologies,":[133],"namely":[134],"Ontology,":[136],"ChEBI":[137],"SBO.":[139],"find":[141],"out":[144],"determine":[151],"characteristic":[152],"arbitrary":[155],"models:":[158],"The":[159],"selected":[160],"vary":[162],"depending":[163],"underlying":[166],"set,":[168],"they":[170],"also":[172,207],"specific":[173],"chosen":[176],"set.":[178],"show":[180],"identified":[183],"map":[185],"higher":[190],"up":[191],"hierarchy":[194],"ontologies":[197,216],"than":[198],"Our":[205],"analysis":[206],"reveals":[208],"information":[211],"content":[212],"their":[218],"usage":[219],"annotation":[222],"do":[223],"not":[224],"correlate.":[225],"CONCLUSIONS:":[226],"Annotation-based":[227],"enables":[230],"opposed":[237],"existing":[239],"model-to-keyword":[242],"comparison,":[243],"or":[244],"model-to-model":[245],"comparison.":[246]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
