{"id":"https://openalex.org/W2123808048","doi":"https://doi.org/10.1186/s13326-015-0004-6","title":"Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows","display_name":"Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2123808048","doi":"https://doi.org/10.1186/s13326-015-0004-6","mag":"2123808048","pmid":"https://pubmed.ncbi.nlm.nih.gov/25789153"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-015-0004-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0004-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0004-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0004-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015075381","display_name":"Xiao Fu","orcid":"https://orcid.org/0000-0003-4847-9586"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Xiao Fu","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050960711","display_name":"Riza Batista-Navarro","orcid":"https://orcid.org/0000-0001-6693-7531"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["GB","PH"],"is_corresponding":false,"raw_author_name":"Riza Batista-Navarro","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manchester, UK ; Department of Computer Science, University of the Philippines Diliman, Quezon City, 1101 Philippines","Department of Computer Science, University of the Philippines Diliman, Quezon City, Philippines","National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manchester, UK ; Department of Computer Science, University of the Philippines Diliman, Quezon City, 1101 Philippines","institution_ids":["https://openalex.org/I87074743"]},{"raw_affiliation_string":"Department of Computer Science, University of the Philippines Diliman, Quezon City, Philippines","institution_ids":["https://openalex.org/I87074743"]},{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071577126","display_name":"Rafa\u0142 Rak","orcid":"https://orcid.org/0000-0001-9780-4205"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rafal Rak","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manchester, UK","National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manchester, UK","National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester Institute of Biotechnology, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5015075381"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":2644,"currency":"EUR","value_usd":2851},"fwci":1.3783,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.80693156,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"6","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4722999930381775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4722999930381775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10143","display_name":"Chronic Obstructive Pulmonary Disease (COPD) Research","score":0.11819999665021896,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12027","display_name":"Social Media in Health Education","score":0.053700000047683716,"subfield":{"id":"https://openalex.org/subfields/3306","display_name":"Health"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8074498176574707},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7631494998931885},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7579513192176819},{"id":"https://openalex.org/keywords/copd","display_name":"COPD","score":0.5967689156532288},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5212474465370178},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4672398865222931},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4224727749824524},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41723090410232544},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36692264676094055},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.272186815738678},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.23662853240966797}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8074498176574707},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7631494998931885},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7579513192176819},{"id":"https://openalex.org/C2776780178","wikidata":"https://www.wikidata.org/wiki/Q199804","display_name":"COPD","level":2,"score":0.5967689156532288},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5212474465370178},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4672398865222931},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4224727749824524},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41723090410232544},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36692264676094055},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.272186815738678},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.23662853240966797},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13326-015-0004-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0004-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0004-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25789153","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25789153","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4364458","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4364458","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/69394412-3296-438f-8fd7-8c0933e53755","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/69394412-3296-438f-8fd7-8c0933e53755","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fu, X, Batista-Navarro, R T, Rak, R & Ananiadou, S 2015, 'Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows', Journal of Biomedical Semantics, vol. 6, no. 8. https://doi.org/10.1186/s13326-015-0004-6","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.atira.dk:publications/69394412-3296-438f-8fd7-8c0933e53755","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/supporting-the-annotation-of-chronic-obstructive-pulmonary-disease-copd-phenotypes-with-text-mining-workflows(69394412-3296-438f-8fd7-8c0933e53755).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fu, X, Batista-Navarro, R T, Rak, R & Ananiadou, S 2015, 'Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows', Journal of Biomedical Semantics, vol. 6, no. 8. https://doi.org/10.1186/s13326-015-0004-6","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s13326-015-0004-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-015-0004-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-015-0004-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2338875955","display_name":null,"funder_award_id":"MR/L01078X/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7579649247","display_name":"Supporting Evidence-based Public Health Interventions using Text Mining","funder_award_id":"MR/L01078X/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8128167343","display_name":null,"funder_award_id":"DARPA-BAA-14-14","funder_id":"https://openalex.org/F4320332180","funder_display_name":"Defense Advanced Research Projects Agency"}],"funders":[{"id":"https://openalex.org/F4320320291","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27"},{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320332815","display_name":"Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123808048.pdf","grobid_xml":"https://content.openalex.org/works/W2123808048.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W68566686","https://openalex.org/W102787101","https://openalex.org/W131094782","https://openalex.org/W192665053","https://openalex.org/W1859222707","https://openalex.org/W1870686808","https://openalex.org/W1982059951","https://openalex.org/W1994474588","https://openalex.org/W2007859640","https://openalex.org/W2012361142","https://openalex.org/W2022451103","https://openalex.org/W2040298842","https://openalex.org/W2046788142","https://openalex.org/W2048024098","https://openalex.org/W2049107599","https://openalex.org/W2058490165","https://openalex.org/W2074931707","https://openalex.org/W2075182631","https://openalex.org/W2077879229","https://openalex.org/W2082258771","https://openalex.org/W2082950241","https://openalex.org/W2087779040","https://openalex.org/W2096797897","https://openalex.org/W2099701465","https://openalex.org/W2104148262","https://openalex.org/W2105939244","https://openalex.org/W2106830745","https://openalex.org/W2108307444","https://openalex.org/W2116034137","https://openalex.org/W2119412782","https://openalex.org/W2120539430","https://openalex.org/W2120754707","https://openalex.org/W2122402213","https://openalex.org/W2125726375","https://openalex.org/W2132079307","https://openalex.org/W2139865360","https://openalex.org/W2140611297","https://openalex.org/W2151068025","https://openalex.org/W2159092541","https://openalex.org/W2159636537","https://openalex.org/W2159985898","https://openalex.org/W2162800060","https://openalex.org/W2166323125","https://openalex.org/W2168041406","https://openalex.org/W2168644196","https://openalex.org/W2169099542","https://openalex.org/W2170189740","https://openalex.org/W2170282111","https://openalex.org/W2183115042","https://openalex.org/W2208683342","https://openalex.org/W2252100726","https://openalex.org/W2568020214","https://openalex.org/W2915128229"],"related_works":["https://openalex.org/W2916894319","https://openalex.org/W2999699891","https://openalex.org/W2030133582","https://openalex.org/W3214915308","https://openalex.org/W2119430093","https://openalex.org/W2186665306","https://openalex.org/W2172869578","https://openalex.org/W2123808048","https://openalex.org/W2183115042","https://openalex.org/W1997653423"],"abstract_inverted_index":{"BACKGROUND:":[0],"Chronic":[1],"obstructive":[2],"pulmonary":[3],"disease":[4],"(COPD)":[5],"is":[6,29,124,269],"a":[7,68,73,139,153,164,189,214],"life-threatening":[8],"lung":[9],"disorder":[10],"whose":[11],"recent":[12],"prevalence":[13],"has":[14],"led":[15],"to":[16,36,187,202,241],"an":[17,120,261],"increasing":[18],"burden":[19],"on":[20,67,108],"public":[21],"healthcare.":[22],"Phenotypic":[23],"information":[24],"in":[25,31,49,86,146,216,232,283],"electronic":[26],"clinical":[27,50],"records":[28],"essential":[30],"providing":[32],"suitable":[33],"personalised":[34],"treatment":[35],"patients":[37],"with":[38,138],"COPD.":[39],"However,":[40],"as":[41],"phenotypes":[42],"are":[43,277],"often":[44],"\"hidden\"":[45],"within":[46],"free":[47],"text":[48,56,82,160,256],"records,":[51],"clinicians":[52],"could":[53],"benefit":[54],"from":[55],"mining":[57,83,161,257],"systems":[58],"that":[59,75,123,157,209],"facilitate":[60],"their":[61],"prompt":[62],"recognition.":[63],"This":[64,143],"paper":[65],"reports":[66],"semi-automatic":[69,154,183],"methodology":[70],"for":[71,168],"producing":[72,127],"corpus":[74,100,266],"can":[76,218],"ultimately":[77],"support":[78,243],"the":[79,90,113,147,182,198,220,235,244,252,265,285],"development":[80,221,286],"of":[81,92,95,101,115,152,192,222,246,254,287],"tools":[84,258],"that,":[85],"turn,":[87],"will":[88],"expedite":[89],"process":[91,245],"identifying":[93],"groups":[94],"COPD":[96,116,132,226,247,290],"patients.":[97],"METHODS:":[98],"A":[99],"30":[102],"full-text":[103],"papers":[104],"was":[105,144,185],"formed":[106],"based":[107],"selection":[109],"criteria":[110],"informed":[111],"by":[112,150,237,251],"expertise":[114],"specialists.":[117],"We":[118,230],"developed":[119],"annotation":[121,155,262],"scheme":[122],"aimed":[125],"at":[126],"fine-grained,":[128],"expressive":[129],"and":[130,279],"computable":[131],"annotations":[133],"without":[134],"burdening":[135],"our":[136,210,273],"curators":[137],"highly":[140],"complicated":[141],"task.":[142],"implemented":[145],"Argo":[148],"platform":[149],"means":[151,236],"workflow":[156,184],"integrates":[158],"several":[159],"tools,":[162],"including":[163],"graphical":[165],"user":[166],"interface":[167],"marking":[169],"up":[170],"documents.":[171],"RESULTS:":[172],"When":[173],"evaluated":[174],"using":[175],"gold":[176,199],"standard":[177,200],"(i.e.,":[178],"manually":[179],"validated)":[180],"annotations,":[181],"shown":[186],"obtain":[188],"micro-averaged":[190],"F-score":[191],"45.70%":[193],"(with":[194],"relaxed":[195],"matching).":[196],"Utilising":[197],"data":[201],"train":[203],"new":[204],"concept":[205],"recognisers,":[206],"we":[207,239],"demonstrated":[208],"corpus,":[211],"although":[212],"still":[213,270],"work":[215,234],"progress,":[217],"foster":[219],"significantly":[223],"better":[224],"performing":[225],"phenotype":[227,248,291],"extractors.":[228,292],"CONCLUSIONS:":[229],"describe":[231],"this":[233],"which":[238],"aim":[240],"eventually":[242],"curation,":[249],"i.e.,":[250],"application":[253],"various":[255],"integrated":[259],"into":[260],"workflow.":[263],"Although":[264],"being":[267],"described":[268],"under":[271],"development,":[272],"results":[274],"thus":[275],"far":[276],"encouraging":[278],"show":[280],"great":[281],"potential":[282],"stimulating":[284],"further":[288],"automatic":[289]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
