{"id":"https://openalex.org/W7161601953","doi":"https://doi.org/10.1186/s13321-026-01217-2","title":"Revisiting ADMET prediction reliability under real-world challenges in the foundation model era","display_name":"Revisiting ADMET prediction reliability under real-world challenges in the foundation model era","publication_year":2026,"publication_date":"2026-05-18","ids":{"openalex":"https://openalex.org/W7161601953","doi":"https://doi.org/10.1186/s13321-026-01217-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/42152045"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-026-01217-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-026-01217-2","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s13321-026-01217-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5136397984","display_name":"Donghai Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Donghai Zhao","raw_affiliation_strings":["CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, China","Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, China","institution_ids":[]},{"raw_affiliation_string":"Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China","institution_ids":["https://openalex.org/I4210166576","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021189022","display_name":"Yi Zhu","orcid":"https://orcid.org/0000-0003-0429-0802"},"institutions":[{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuchen Zhu","raw_affiliation_strings":["Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China","institution_ids":["https://openalex.org/I4210166576","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102788910","display_name":"Zhenxing Wu","orcid":"https://orcid.org/0000-0002-1060-5957"},"institutions":[{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenxing Wu","raw_affiliation_strings":["Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China","institution_ids":["https://openalex.org/I4210166576","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136361358","display_name":"Yue Wan","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yue Wan","raw_affiliation_strings":["Department of Computer Science, University of Pittsburgh, Pittsburgh, PA, 15260, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Pittsburgh, Pittsburgh, PA, 15260, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134389069","display_name":"Xiaonan Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaonan Liu","raw_affiliation_strings":["Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China","institution_ids":["https://openalex.org/I4210166576","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113203776","display_name":"Shuaiyan Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuaiyan Li","raw_affiliation_strings":["Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China","institution_ids":["https://openalex.org/I4210166576","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136417455","display_name":"Hongxia Xu","orcid":"https://orcid.org/0009-0008-6795-9124"},"institutions":[{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hongxia Xu","raw_affiliation_strings":["Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China. Einstein@zju.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China. Einstein@zju.edu.cn","institution_ids":["https://openalex.org/I4210166576","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028525523","display_name":"Tingjun Hou","orcid":"https://orcid.org/0000-0001-7227-2580"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tingjun Hou","raw_affiliation_strings":["Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China. tingjunhou@zju.edu.cn","Zhejiang Provincial Key Laboratory for Intelligent Drug Discovery and Development, Jinhua, 321016, Zhejiang, China. tingjunhou@zju.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China. tingjunhou@zju.edu.cn","institution_ids":["https://openalex.org/I4210166576","https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang Provincial Key Laboratory for Intelligent Drug Discovery and Development, Jinhua, 321016, Zhejiang, China. tingjunhou@zju.edu.cn","institution_ids":["https://openalex.org/I4210123185"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008663435","display_name":"Chang\u2010Yu Hsieh","orcid":"https://orcid.org/0000-0002-6242-4218"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chang-Yu Hsieh","raw_affiliation_strings":["Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China. kimhsieh@zju.edu.cn","Zhejiang Provincial Key Laboratory for Intelligent Drug Discovery and Development, Jinhua, 321016, Zhejiang, China. kimhsieh@zju.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, College of Pharmaceutical Sciences, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310058, Zhejiang, China. kimhsieh@zju.edu.cn","institution_ids":["https://openalex.org/I4210166576","https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang Provincial Key Laboratory for Intelligent Drug Discovery and Development, Jinhua, 321016, Zhejiang, China. kimhsieh@zju.edu.cn","institution_ids":["https://openalex.org/I4210123185"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008663435","https://openalex.org/A5028525523","https://openalex.org/A5136417455"],"corresponding_institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I4210166576","https://openalex.org/I76130692"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.57878835,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"18","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12127","display_name":"Software System Performance and Reliability","score":0.04749999940395355,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12127","display_name":"Software System Performance and Reliability","score":0.04749999940395355,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.04309999942779541,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11652","display_name":"Imbalanced Data Classification Techniques","score":0.042899999767541885,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.5853999853134155},{"id":"https://openalex.org/keywords/foundation","display_name":"Foundation (evidence)","score":0.5407999753952026},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.26570001244544983},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.2578999996185303}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6488000154495239},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.5853999853134155},{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.5407999753952026},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35010001063346863},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.3278999924659729},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3239000141620636},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.26570001244544983},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.26339998841285706},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.2578999996185303},{"id":"https://openalex.org/C42475967","wikidata":"https://www.wikidata.org/wiki/Q194292","display_name":"Operations research","level":1,"score":0.2533999979496002},{"id":"https://openalex.org/C200601418","wikidata":"https://www.wikidata.org/wiki/Q2193887","display_name":"Reliability engineering","level":1,"score":0.25220000743865967}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-026-01217-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-026-01217-2","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:42152045","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42152045","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:3bdb2e0e2e24421386aa00c32bb8783d","is_oa":false,"landing_page_url":"https://doaj.org/article/3bdb2e0e2e24421386aa00c32bb8783d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 18, Iss 1 (2026)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13371653","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13371653/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-026-01217-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-026-01217-2","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Climate action","score":0.5941765308380127,"id":"https://metadata.un.org/sdg/13"}],"awards":[{"id":"https://openalex.org/G2627715752","display_name":null,"funder_award_id":"22373085","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W2007344527","https://openalex.org/W2034541070","https://openalex.org/W2554124061","https://openalex.org/W2594183968","https://openalex.org/W2791355014","https://openalex.org/W2797108417","https://openalex.org/W2899434936","https://openalex.org/W2911964244","https://openalex.org/W2968734407","https://openalex.org/W2969759649","https://openalex.org/W2990376563","https://openalex.org/W3015208165","https://openalex.org/W3017210109","https://openalex.org/W3118317455","https://openalex.org/W3181995918","https://openalex.org/W3205080921","https://openalex.org/W4205411722","https://openalex.org/W4206337041","https://openalex.org/W4211238337","https://openalex.org/W4213077304","https://openalex.org/W4214868967","https://openalex.org/W4224220091","https://openalex.org/W4239510810","https://openalex.org/W4286911746","https://openalex.org/W4287826698","https://openalex.org/W4296035488","https://openalex.org/W4310603653","https://openalex.org/W4327694659","https://openalex.org/W4381252028","https://openalex.org/W4382132796","https://openalex.org/W4385774226","https://openalex.org/W4385829972","https://openalex.org/W4387294164","https://openalex.org/W4387617009","https://openalex.org/W4388845139","https://openalex.org/W4390221451","https://openalex.org/W4391431291","https://openalex.org/W4396768244","https://openalex.org/W4396821501","https://openalex.org/W4399940463","https://openalex.org/W4400112692","https://openalex.org/W4402429489","https://openalex.org/W4404167537","https://openalex.org/W4406086741","https://openalex.org/W4406170795","https://openalex.org/W4406527556","https://openalex.org/W4406928246","https://openalex.org/W4410957854","https://openalex.org/W4410966280","https://openalex.org/W4413224864"],"related_works":[],"abstract_inverted_index":{"As":[0],"AI-driven":[1],"drug":[2,53,323],"discovery":[3,54,324],"fully":[4],"enters":[5],"the":[6,108,114,123,137,172,214,223,262,268,279,300,326,331,340,372,401],"era":[7],"of":[8,38,78,113,136,248,267,304,359,378,394],"foundation":[9,26,96,102,125,141,338,342],"models,":[10,339,415],"druggability":[11,306,317],"prediction":[12,307],"is":[13,251],"undergoing":[14],"a":[15,36,62,154,159,210,288,312,409],"profound":[16],"transformation":[17],"from":[18],"being":[19],"experience-driven":[20],"to":[21,143,184,204,221,230,260],"\"data-driven.\"":[22],"While":[23],"numerous":[24],"molecular":[25,95,115,140,280,337,402],"models":[27,97,103,247,271,380,395],"with":[28,51,158,195],"diverse":[29],"representation":[30],"capabilities":[31,131],"have":[32],"emerged,":[33],"there":[34],"remains":[35],"lack":[37],"systematic":[39,313],"empirical":[40],"mapping":[41],"regarding":[42],"their":[43,382],"frontier":[44],"boundaries":[45],"and":[46,70,84,100,111,120,164,166,265,302,351,365,381,399],"intrinsic":[47],"limitations":[48,112,358],"when":[49,193],"faced":[50],"real-world":[52,239,322],"challenges.":[55],"To":[56,235],"this":[57,59,219,241],"end,":[58],"study":[60,220,242,310,373],"establishes":[61,311],"testing":[63],"benchmark":[64,314],"encompassing":[65],"four":[66,320],"major":[67],"challenges-data":[68],"scarcity":[69],"Out-of-Distribution":[71],"(OOD)":[72],"generalization,":[73,83],"class":[74,146],"imbalance,":[75,147],"\"beyond":[76],"Rule":[77],"5\"":[79],"(bRo5)":[80],"chemical":[81,170,333],"space":[82],"activity":[85,207],"cliffs-to":[86],"perform":[87],"large-scale":[88,369],"benchmarking":[89],"on":[90,151],"cutting-edge":[91],"architectures":[92,187,216],"such":[93,274],"as":[94,287,408],"(KPGT,":[98],"Uni-Mol)":[99],"tabular":[101,124,341],"(TabPFNv2).":[104],"Our":[105],"analysis":[106],"reveals":[107,374],"current":[109],"frontiers":[110],"AI":[116,215],"field:":[117],"in":[118,188,218,233,330,362],"few-shot":[119],"OOD":[121],"scenarios,":[122],"model":[126,200,343,366],"TabPFNv2":[127],"demonstrates":[128,389],"superior":[129],"generalization":[130,328],"that":[132,244,278,390,400],"often":[133],"outperform":[134],"those":[135],"evaluated":[138,217],"customized":[139],"models;":[142],"address":[144],"extreme":[145],"ensemble":[148],"strategies":[149],"based":[150],"undersampling":[152],"provide":[153,296],"robust":[155],"mitigation":[156],"approach":[157],"reasonable":[160],"trade-off":[161],"between":[162],"recall":[163],"precision;":[165],"within":[167],"complex":[168,238],"bRo5":[169,332],"spaces,":[171],"pre-trained":[173],"Graph":[174],"Neural":[175],"Network":[176],"(GNN)":[177],"KPGT":[178],"achieves":[179],"higher":[180],"predictive":[181,257,397],"accuracy":[182],"compared":[183],"other":[185],"tested":[186],"predicting":[189],"cyclic":[190],"peptide":[191],"permeability":[192],"provided":[194],"sufficient":[196],"samples.":[197],"However,":[198],"all":[199],"categories":[201],"consistently":[202],"struggle":[203],"effectively":[205],"identify":[206],"cliffs,":[208],"highlighting":[209],"persistent":[211,383],"challenge":[212,329],"for":[213,255,273,299,316,412],"capture":[222],"phenomenon":[224],"where":[225],"minute":[226],"structural":[227],"variations":[228],"lead":[229],"dramatic":[231],"shifts":[232],"properties.":[234],"tackle":[236],"these":[237,294],"challenges,":[240],"confirms":[243],"ensembling":[245,391],"high-performance":[246],"different":[249,379,392],"modalities":[250],"an":[252],"effective":[253],"strategy":[254],"improving":[256],"robustness.":[258],"Furthermore,":[259],"facilitate":[261],"low-cost":[263,410],"screening":[264],"construction":[266],"high-quality":[269,414],"base":[270],"needed":[272],"ensembles,":[275],"we":[276],"validated":[277],"property":[281,403],"landscape":[282,404],"roughness":[283,405],"index":[284,406],"can":[285],"serve":[286],"lightweight":[289],"diagnostic":[290],"tool.":[291],"Taken":[292],"together,":[293],"insights":[295,419],"practical":[297],"guidance":[298],"evaluation":[301],"selection":[303],"contemporary":[305],"models.Scientific":[308],"contributionThis":[309],"framework":[315],"prediction,":[318],"simulating":[319],"key":[321],"scenarios-including":[325],"underexplored":[327],"space-and":[334],"comprehensively":[335],"evaluating":[336],"TabPFNv2,":[344],"GNNs,":[345],"Automated":[346],"Machine":[347],"Learning":[348],"(AutoML)":[349],"framework,":[350],"classical":[352],"machine":[353],"learning":[354],"approaches,":[355],"thereby":[356],"overcoming":[357],"prior":[360],"benchmarks":[361],"task":[363],"diversity":[364],"coverage.":[367],"Through":[368],"train-evaluation":[370],"cycles,":[371],"both":[375],"scenario-specific":[376],"strengths":[377],"shared":[384],"weaknesses.":[385],"Beyond":[386],"benchmarking,":[387],"it":[388],"types":[393],"improves":[396],"performance":[398],"serves":[407],"tool":[411],"selecting":[413],"offering":[416],"more":[417],"actionable":[418],"than":[420],"previous":[421],"comparison":[422],"studies.":[423]},"counts_by_year":[],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2026-05-19T00:00:00"}
