{"id":"https://openalex.org/W7130658430","doi":"https://doi.org/10.1186/s13321-025-01135-9","title":"PROTAC-Splitter: a machine learning framework for automated identification of PROTAC substructures","display_name":"PROTAC-Splitter: a machine learning framework for automated identification of PROTAC substructures","publication_year":2026,"publication_date":"2026-02-20","ids":{"openalex":"https://openalex.org/W7130658430","doi":"https://doi.org/10.1186/s13321-025-01135-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/41721433"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-01135-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01135-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13321-025-01135-9.pdf","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13321-025-01135-9.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061274269","display_name":"Stefano Ribes","orcid":null},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Stefano Ribes","raw_affiliation_strings":["Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden","institution_ids":["https://openalex.org/I66862912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052308625","display_name":"R Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ranxuan Zhang","raw_affiliation_strings":["Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden","institution_ids":["https://openalex.org/I66862912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088070530","display_name":"T\u00e9lio Cropsal","orcid":"https://orcid.org/0009-0006-9040-5029"},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"T\u00e9lio Cropsal","raw_affiliation_strings":["Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden","institution_ids":["https://openalex.org/I66862912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126494879","display_name":"Anders K\u00e4llberg","orcid":null},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Anders K\u00e4llberg","raw_affiliation_strings":["Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden","institution_ids":["https://openalex.org/I66862912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051401603","display_name":"Christian Tyrchan","orcid":"https://orcid.org/0000-0002-6470-984X"},"institutions":[{"id":"https://openalex.org/I4210109524","display_name":"AstraZeneca (Australia)","ror":"https://ror.org/018nw3344","country_code":"AU","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210109524"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Christian Tyrchan","raw_affiliation_strings":["Medicinal Chemistry, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Pepparedsleden 1, 431 83, Gothenburg, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medicinal Chemistry, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Pepparedsleden 1, 431 83, Gothenburg, Sweden","institution_ids":["https://openalex.org/I4210109524"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077542460","display_name":"Eva Nittinger","orcid":"https://orcid.org/0000-0001-7231-7996"},"institutions":[{"id":"https://openalex.org/I4210109524","display_name":"AstraZeneca (Australia)","ror":"https://ror.org/018nw3344","country_code":"AU","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210109524"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Eva Nittinger","raw_affiliation_strings":["Medicinal Chemistry, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Pepparedsleden 1, 431 83, Gothenburg, Sweden. eva.nittinger@astrazeneca.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medicinal Chemistry, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Pepparedsleden 1, 431 83, Gothenburg, Sweden. eva.nittinger@astrazeneca.com","institution_ids":["https://openalex.org/I4210109524"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090993508","display_name":"Roc\u00edo Mercado","orcid":"https://orcid.org/0000-0002-6170-6088"},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Roc\u00edo Mercado","raw_affiliation_strings":["Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden. rocio.mercado@chalmers.se"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Chalmers University of Technology and University of Gothenburg, Chalmersplatsen 1, 412 96, Gothenburg, Sweden. rocio.mercado@chalmers.se","institution_ids":["https://openalex.org/I66862912"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5090993508"],"corresponding_institution_ids":["https://openalex.org/I66862912"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":24.5178,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.99418038,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"18","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12820","display_name":"Chromatin Remodeling and Cancer","score":0.004600000102072954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6532999873161316},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5576000213623047},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.47920000553131104},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.46540001034736633},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4629000127315521},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.3370000123977661}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7865999937057495},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6532999873161316},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6373000144958496},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6044999957084656},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5576000213623047},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.47920000553131104},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.46540001034736633},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4629000127315521},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4456000030040741},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.3370000123977661},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3005000054836273},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.28839999437332153},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.27129998803138733},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.2635999917984009},{"id":"https://openalex.org/C160920958","wikidata":"https://www.wikidata.org/wiki/Q7662746","display_name":"Synthetic data","level":2,"score":0.26170000433921814},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.26100000739097595}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-025-01135-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01135-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13321-025-01135-9.pdf","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:41721433","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41721433","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:92d409889521464eb9cfbb081e737de8","is_oa":true,"landing_page_url":"https://doaj.org/article/92d409889521464eb9cfbb081e737de8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 18, Iss 1 (2026)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12924545","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12924545/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-01135-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01135-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13321-025-01135-9.pdf","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8869864247","display_name":null,"funder_award_id":"2022-06725","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"}],"funders":[{"id":"https://openalex.org/F4320307770","display_name":"AstraZeneca","ror":"https://ror.org/04r9x1a08"},{"id":"https://openalex.org/F4320321523","display_name":"Chalmers Tekniska H\u00f6gskola","ror":"https://ror.org/040wg7k59"},{"id":"https://openalex.org/F4320322327","display_name":"Knut och Alice Wallenbergs Stiftelse","ror":"https://ror.org/004hzzk67"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7130658430.pdf","grobid_xml":"https://content.openalex.org/works/W7130658430.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W2148143831","https://openalex.org/W2171707538","https://openalex.org/W2295598076","https://openalex.org/W3044640842","https://openalex.org/W3136546688","https://openalex.org/W4226159083","https://openalex.org/W4296128995","https://openalex.org/W4297632148","https://openalex.org/W4307362175","https://openalex.org/W4309447026","https://openalex.org/W4309650743","https://openalex.org/W4385245566","https://openalex.org/W4391248371","https://openalex.org/W4400441613","https://openalex.org/W4400616986","https://openalex.org/W4402170913","https://openalex.org/W4402926321","https://openalex.org/W4404174012","https://openalex.org/W4407277074","https://openalex.org/W4408509051","https://openalex.org/W4409784459"],"related_works":[],"abstract_inverted_index":{"),":[0],"which":[1],"corrects":[2],"partial":[3],"prediction":[4],"errors,":[5],"raising":[6],"reassembly":[7],"accuracy":[8],"to":[9,43],"96%":[10],"on":[11,15],"public":[12],"and":[13,48],"70%":[14],"internal":[16],"datasets.":[17],"Combining":[18],"the":[19],"strengths":[20],"of":[21],"both":[22],"models,":[23],"we":[24],"propose":[25],"a":[26,39],"hybrid":[27],"approach":[28],"that":[29],"reliably":[30],"annotates":[31],"PROTACs":[32],"across":[33],"diverse":[34],"chemical":[35],"spaces.":[36],"PROTAC-Splitter":[37],"provides":[38],"robust,":[40],"scalable":[41],"tool":[42],"facilitate":[44],"automated":[45],"PROTAC":[46],"analysis":[47],"is":[49],"available":[50],"open-source":[51],"at":[52],"https://github.com/ribesstefano/PROTAC-Splitter.":[53]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2026-02-20T00:00:00"}
