{"id":"https://openalex.org/W4414507809","doi":"https://doi.org/10.1186/s13321-025-01084-3","title":"Cache: Utilizing ultra-large library screening in Rosetta to identify novel binders of the WD-repeat domain of Leucine-Rich Repeat Kinase 2","display_name":"Cache: Utilizing ultra-large library screening in Rosetta to identify novel binders of the WD-repeat domain of Leucine-Rich Repeat Kinase 2","publication_year":2025,"publication_date":"2025-09-25","ids":{"openalex":"https://openalex.org/W4414507809","doi":"https://doi.org/10.1186/s13321-025-01084-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/40999521"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-01084-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01084-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01084-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01084-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060720256","display_name":"Fabian Lie\u00dfmann","orcid":"https://orcid.org/0009-0007-9199-1629"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Fabian Liessmann","raw_affiliation_strings":["Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University, 04105, Leipzig, Germany","Institute for Drug Discovery, Leipzig University, 04103, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University, 04105, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University, 04103, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095941677","display_name":"Paul Eisenhuth","orcid":"https://orcid.org/0009-0006-7379-5096"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paul Eisenhuth","raw_affiliation_strings":["Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University, 04105, Leipzig, Germany","Institute for Drug Discovery, Leipzig University, 04103, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University, 04105, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University, 04103, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114315484","display_name":"Alexander F\u00fcrll","orcid":"https://orcid.org/0009-0008-3141-2434"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander F\u00fcrll","raw_affiliation_strings":["Institute for Drug Discovery, Leipzig University, 04103, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University, 04103, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043573734","display_name":"Oanh Vu","orcid":"https://orcid.org/0000-0003-4704-7538"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oanh Vu","raw_affiliation_strings":["Center for Structural Biology, Vanderbilt University, Nashville, TN, 37235, USA"],"affiliations":[{"raw_affiliation_string":"Center for Structural Biology, Vanderbilt University, Nashville, TN, 37235, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070699089","display_name":"Rocco Moretti","orcid":"https://orcid.org/0000-0003-2162-1116"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rocco Moretti","raw_affiliation_strings":["Center for Structural Biology, Vanderbilt University, Nashville, TN, 37235, USA","Department of Chemistry, Department of Pharmacology and Institute of Chemical Biology, Vanderbilt University, Nashville, TN, 37235, USA"],"affiliations":[{"raw_affiliation_string":"Center for Structural Biology, Vanderbilt University, Nashville, TN, 37235, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Chemistry, Department of Pharmacology and Institute of Chemical Biology, Vanderbilt University, Nashville, TN, 37235, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025842562","display_name":"Jens Meiler","orcid":"https://orcid.org/0000-0001-8945-193X"},"institutions":[{"id":"https://openalex.org/I147765834","display_name":"Leipzig University of Applied Sciences","ror":"https://ror.org/03xgcq477","country_code":"DE","type":"education","lineage":["https://openalex.org/I147765834"]},{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I4210116523","display_name":"Institute of Computer Vision and Applied Computer Sciences","ror":"https://ror.org/02b790a63","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210116523"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Jens Meiler","raw_affiliation_strings":["Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University, 04105, Leipzig, Germany. jens@meilerlab.org","Center for Structural Biology, Vanderbilt University, Nashville, TN, 37235, USA. jens@meilerlab.org","Department of Chemistry, Department of Pharmacology and Institute of Chemical Biology, Vanderbilt University, Nashville, TN, 37235, USA. jens@meilerlab.org","Faculty of Mathematics and Informatics, Faculty of Chemistry, Leipzig University, 04103, Leipzig, Germany. jens@meilerlab.org","Institute for Drug Discovery, Leipzig University, 04103, Leipzig, Germany. jens@meilerlab.org","School of Embedded Composite Artificial Intelligence SECAI, 04105, Leipzig, Germany. jens@meilerlab.org","Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University, 04105, Leipzig, Germany","Department of Chemistry, Department of Pharmacology and Institute of Chemical Biology, Vanderbilt University, Nashville, TN, 37235, USA"],"affiliations":[{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University, 04105, Leipzig, Germany. jens@meilerlab.org","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Center for Structural Biology, Vanderbilt University, Nashville, TN, 37235, USA. jens@meilerlab.org","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Chemistry, Department of Pharmacology and Institute of Chemical Biology, Vanderbilt University, Nashville, TN, 37235, USA. jens@meilerlab.org","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Faculty of Mathematics and Informatics, Faculty of Chemistry, Leipzig University, 04103, Leipzig, Germany. jens@meilerlab.org","institution_ids":["https://openalex.org/I147765834","https://openalex.org/I926574661"]},{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University, 04103, Leipzig, Germany. jens@meilerlab.org","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"School of Embedded Composite Artificial Intelligence SECAI, 04105, Leipzig, Germany. jens@meilerlab.org","institution_ids":["https://openalex.org/I4210116523"]},{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University, 04105, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Department of Chemistry, Department of Pharmacology and Institute of Chemical Biology, Vanderbilt University, Nashville, TN, 37235, USA","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5060720256"],"corresponding_institution_ids":["https://openalex.org/I926574661"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.7963,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.92289433,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"17","issue":"1","first_page":"145","last_page":"145"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enamine","display_name":"Enamine","score":0.6248999834060669},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.5769000053405762},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5020999908447266},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4848000109195709},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.47540000081062317},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.43149998784065247},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.3776000142097473}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6620000004768372},{"id":"https://openalex.org/C2776378156","wikidata":"https://www.wikidata.org/wiki/Q408018","display_name":"Enamine","level":3,"score":0.6248999834060669},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.5769000053405762},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5565999746322632},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5020999908447266},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4848000109195709},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.47540000081062317},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.43149998784065247},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.3776000142097473},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.37630000710487366},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36419999599456787},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.3628000020980835},{"id":"https://openalex.org/C2780430158","wikidata":"https://www.wikidata.org/wiki/Q7685902","display_name":"Target protein","level":3,"score":0.3393999934196472},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33739998936653137},{"id":"https://openalex.org/C74998103","wikidata":"https://www.wikidata.org/wiki/Q898254","display_name":"Dissociation constant","level":3,"score":0.33219999074935913},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.305400013923645},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.29679998755455017},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2750000059604645},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.25609999895095825},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.2502000033855438}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-025-01084-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01084-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01084-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:40999521","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40999521","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:19cb60102a5d45a5bb4b15c657075d63","is_oa":true,"landing_page_url":"https://doaj.org/article/19cb60102a5d45a5bb4b15c657075d63","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-17 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11274503","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12465524","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12465524","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12465524/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-01084-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01084-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01084-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1025965137","display_name":null,"funder_award_id":"R01 HL122010","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1255282577","display_name":null,"funder_award_id":"HL122010","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1264485646","display_name":null,"funder_award_id":"R01 DA046138","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1479485356","display_name":null,"funder_award_id":"209933838","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G1621402477","display_name":null,"funder_award_id":"SFB1052","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G1633987393","display_name":null,"funder_award_id":"SPP2363","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G1650101777","display_name":null,"funder_award_id":"S10 OD020154","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1881016526","display_name":null,"funder_award_id":"R01 CA227833","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2436386463","display_name":null,"funder_award_id":"Scient","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G2784603260","display_name":null,"funder_award_id":"LM013434","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3944798588","display_name":null,"funder_award_id":"R01 AG068623","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4994359279","display_name":null,"funder_award_id":"421152132","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5016914395","display_name":null,"funder_award_id":"SECAI","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G5088104505","display_name":null,"funder_award_id":"de.NBI","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6024419964","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G610244341","display_name":null,"funder_award_id":"514664767","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6749396883","display_name":null,"funder_award_id":"SFB1423","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6846469457","display_name":null,"funder_award_id":"S10 OD032234","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6894810935","display_name":null,"funder_award_id":"U01 AI150739","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6913765328","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320308269","funder_display_name":"Alexander von Humboldt-Stiftung"},{"id":"https://openalex.org/G6955755495","display_name":null,"funder_award_id":"Germany","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7069746723","display_name":null,"funder_award_id":"TRR386","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7118142057","display_name":null,"funder_award_id":"S10 OD016216","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7119510769","display_name":null,"funder_award_id":"R01 LM013434","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7223072543","display_name":null,"funder_award_id":"SECAI 15766814","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G7355620950","display_name":null,"funder_award_id":"514901783","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8016855698","display_name":null,"funder_award_id":"SCADS24B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8119885652","display_name":null,"funder_award_id":"Germany","funder_id":"https://openalex.org/F4320308269","funder_display_name":"Alexander von Humboldt-Stiftung"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8756277515","display_name":null,"funder_award_id":"460865652","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8928656450","display_name":null,"funder_award_id":"Projekt DEAL","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320306136","display_name":"Michael J. Fox Foundation for Parkinson's Research","ror":"https://ror.org/03arq3225"},{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320309151","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34"},{"id":"https://openalex.org/F4320315721","display_name":"Max Kade Foundation","ror":"https://ror.org/02tn5vs15"},{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320322015","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087"},{"id":"https://openalex.org/F4320325298","display_name":"Universit\u00e4t Leipzig","ror":"https://ror.org/03s7gtk40"},{"id":"https://openalex.org/F4320330124","display_name":"German Network for Bioinformatics Infrastructure","ror":null},{"id":"https://openalex.org/F4320330169","display_name":"Enamine","ror":"https://ror.org/02t6zky14"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414507809.pdf","grobid_xml":"https://content.openalex.org/works/W4414507809.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1024072833","https://openalex.org/W1507887256","https://openalex.org/W1755674448","https://openalex.org/W1951215936","https://openalex.org/W1968480932","https://openalex.org/W1980949045","https://openalex.org/W1988037271","https://openalex.org/W1990045885","https://openalex.org/W1995764259","https://openalex.org/W1999648327","https://openalex.org/W2011991138","https://openalex.org/W2017254234","https://openalex.org/W2017285544","https://openalex.org/W2021832765","https://openalex.org/W2043509228","https://openalex.org/W2058090201","https://openalex.org/W2103994532","https://openalex.org/W2109667858","https://openalex.org/W2116594309","https://openalex.org/W2119512897","https://openalex.org/W2152903006","https://openalex.org/W2175130792","https://openalex.org/W2761872853","https://openalex.org/W2774738748","https://openalex.org/W2910972593","https://openalex.org/W2912171584","https://openalex.org/W2932449756","https://openalex.org/W2954028792","https://openalex.org/W2989052455","https://openalex.org/W2996312555","https://openalex.org/W3027975282","https://openalex.org/W3068292362","https://openalex.org/W3092705559","https://openalex.org/W3113976260","https://openalex.org/W3132447912","https://openalex.org/W3171048111","https://openalex.org/W3201539868","https://openalex.org/W3214477352","https://openalex.org/W4200233821","https://openalex.org/W4200289210","https://openalex.org/W4206525059","https://openalex.org/W4223920159","https://openalex.org/W4223989076","https://openalex.org/W4248107770","https://openalex.org/W4283835519","https://openalex.org/W4294309410","https://openalex.org/W4316507591","https://openalex.org/W4362573458","https://openalex.org/W4379967278","https://openalex.org/W4381716077","https://openalex.org/W4385323450","https://openalex.org/W4393397025","https://openalex.org/W4394729858","https://openalex.org/W4400007971","https://openalex.org/W4400834487","https://openalex.org/W4404059365","https://openalex.org/W4405249417","https://openalex.org/W4406193027"],"related_works":[],"abstract_inverted_index":{"In":[0,145],"this":[1,51,64,201],"study,":[2],"we":[3,267],"present":[4,268],"a":[5,23,42,81,109,121,169,180,269,276],"pipeline":[6,271],"for":[7,46,90,158,212,228,239,248],"identifying":[8,108],"novel":[9,246],"ligands":[10],"targeting":[11],"the":[12,32,54,76,101,125,138,146,151,164,198,210,216,224,249,255,260],"Tryptophan-Aspartate-Repeat":[13],"domain":[14,251],"40":[15],"(WDR40)":[16],"of":[17,31,36,59,75,93,140,150,171,200,252,264,275],"Leucine-Rich":[18],"Repeat":[19],"Kinase":[20],"2":[21],"(LRRK2),":[22],"protein":[24,52,241,278],"associated":[25],"with":[26,104,280],"Parkinson's":[27,61],"disease,":[28,62],"as":[29,156,209],"part":[30],"first":[33,225,261],"Critical":[34],"Assessment":[35],"Computational":[37],"Hit-finding":[38],"Experiments":[39],"(CACHE)":[40],"challenge,":[41],"blind":[43],"benchmark":[44],"experiment":[45],"drug":[47],"discovery.":[48],"Mutations":[49],"in":[50,120,215],"are":[53],"most":[55],"common":[56],"genetic":[57],"cause":[58],"familial":[60],"yet":[63],"target":[65,102],"remains":[66],"understudied.":[67],"We":[68,222],"conducted":[69],"an":[70,230],"ultra-large":[71,236],"library":[72,237],"screening":[73,92,238],"(ULLS)":[74],"Enamine":[77,142,165],"REAL":[78,166],"space":[79],"using":[80],"newly":[82],"developed":[83],"evolutionary":[84,231],"algorithm,":[85],"RosettaEvolutionaryLigand":[86],"(REvoLd),":[87],"which":[88,177],"allows":[89],"efficient":[91,235],"combinatorial":[94,296],"compound":[95,153],"libraries.":[96],"The":[97],"protocol":[98],"involved":[99],"refining":[100],"structure":[103],"molecular":[105],"dynamic":[106],"simulations,":[107],"binding":[110,282],"site":[111],"via":[112],"blind-docking,":[113],"and":[114,284,295],"optimizing":[115],"compounds":[116],"through":[117],"REvoLd,":[118,229],"culminating":[119],"manual":[122],"selection":[123],"amongst":[124],"top-scoring":[126],"REvoLd":[127,159],"hits.":[128],"A":[129],"single":[130],"binder":[131],"molecule":[132],"was":[133],"identified":[134,245],"that":[135],"derived":[136],"from":[137,176],"combination":[139],"two":[141],"building":[143],"blocks.":[144],"second":[147],"round,":[148],"derivatives":[149],"hit":[152],"were":[154,174],"used":[155],"input":[157],"to":[160,272],"further":[161],"sample":[162],"within":[163,254],"space.":[167],"Ultimately,":[168],"total":[170],"five":[172],"molecules":[173],"identified,":[175],"three":[178],"show":[179],"measurable":[181],"dissociation":[182],"constant":[183],"K":[184],"<mml:math":[185,194],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mmultiscripts><mml:mrow></mml:mrow>":[186],"<mml:mi>D</mml:mi>":[187],"<mml:mrow></mml:mrow></mml:mmultiscripts>":[188],"</mml:math>":[189],"value":[190],"better":[191],"than":[192],"150":[193],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mi>\u03bc</mml:mi></mml:math>":[195],"\u03bcm,":[196],"showcasing":[197],"effectiveness":[199],"approach.":[202],"However,":[203],"it":[204],"also":[205],"highlighted":[206],"shortcomings,":[207],"such":[208],"preference":[211],"nitrogen-rich":[213],"rings":[214],"RosettaLigand":[217],"scoring":[218],"function.":[219],"SCIENTIFIC":[220],"CONTRIBUTION:":[221],"introduce":[223],"real-world":[226],"application":[227],"docking":[232,288],"algorithm":[233],"enabling":[234],"flexible":[240],"targets.":[242],"Our":[243],"approach":[244],"binders":[247],"WDR40":[250],"LRRK2":[253],"CACHE":[256],"challenge":[257],"#1,":[258],"representing":[259],"prospective":[262],"validation":[263],"REvoLd.":[265],"Here,":[266],"preparation":[270],"allow":[273],"exploration":[274],"large":[277],"pocket":[279],"unspecific":[281],"areas,":[283],"unlike":[285],"prior":[286],"brute-force":[287],"efforts,":[289],"our":[290],"method":[291],"integrates":[292],"receptor":[293],"flexibility":[294],"chemistry":[297],"optimization.":[298]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
