{"id":"https://openalex.org/W4410915192","doi":"https://doi.org/10.1186/s13321-025-01029-w","title":"Semi-supervised prediction of protein fitness for data-driven protein engineering","display_name":"Semi-supervised prediction of protein fitness for data-driven protein engineering","publication_year":2025,"publication_date":"2025-05-31","ids":{"openalex":"https://openalex.org/W4410915192","doi":"https://doi.org/10.1186/s13321-025-01029-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/40450362"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-01029-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01029-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01029-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01029-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070894824","display_name":"Alicia Olivares\u2010Gil","orcid":"https://orcid.org/0000-0002-3378-197X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Alicia Olivares-Gil","raw_affiliation_strings":["Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain. aolivares@ubu.es"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain. aolivares@ubu.es","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039605195","display_name":"Jos\u00e9 A. Barbero\u2010Aparicio","orcid":"https://orcid.org/0000-0002-3269-0806"},"institutions":[{"id":"https://openalex.org/I46176106","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36","country_code":"ES","type":"education","lineage":["https://openalex.org/I46176106"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 A. Barbero-Aparicio","raw_affiliation_strings":["Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain","institution_ids":["https://openalex.org/I46176106"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100639199","display_name":"Juan J. Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-3291-2739"},"institutions":[{"id":"https://openalex.org/I46176106","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36","country_code":"ES","type":"education","lineage":["https://openalex.org/I46176106"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan J. Rodr\u00edguez","raw_affiliation_strings":["Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain","institution_ids":["https://openalex.org/I46176106"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015719908","display_name":"Jos\u00e9-Francisco D\u00edez-Pastor","orcid":"https://orcid.org/0000-0001-5013-7505"},"institutions":[{"id":"https://openalex.org/I46176106","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36","country_code":"ES","type":"education","lineage":["https://openalex.org/I46176106"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 F. D\u00edez-Pastor","raw_affiliation_strings":["Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain","institution_ids":["https://openalex.org/I46176106"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013580074","display_name":"C\u00e9sar Garc\u00eda\u2010Osorio","orcid":"https://orcid.org/0000-0002-1206-1084"},"institutions":[{"id":"https://openalex.org/I46176106","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36","country_code":"ES","type":"education","lineage":["https://openalex.org/I46176106"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C\u00e9sar Garc\u00eda-Osorio","raw_affiliation_strings":["Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda Inform\u00e1tica, Universidad De Burgos, Avda. Cantabria s/n, Burgos, 09006, Spain","institution_ids":["https://openalex.org/I46176106"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006829613","display_name":"Mehdi D. Davari","orcid":"https://orcid.org/0000-0003-0089-7156"},"institutions":[{"id":"https://openalex.org/I4210110463","display_name":"Leibniz Institute of Plant Biochemistry","ror":"https://ror.org/01mzk5576","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210110463"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mehdi D. Davari","raw_affiliation_strings":["Department of Bioorganic Chemistry, Leibniz Institute Of Plant Biochemistry, Winberg 3, 06120, Halle, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioorganic Chemistry, Leibniz Institute Of Plant Biochemistry, Winberg 3, 06120, Halle, Germany","institution_ids":["https://openalex.org/I4210110463"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070894824"],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05558128,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"17","issue":"1","first_page":"88","last_page":"88"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.670866072177887},{"id":"https://openalex.org/keywords/protein-engineering","display_name":"Protein engineering","score":0.5883094668388367},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4941261112689972},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4624265730381012},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39140480756759644},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3439560830593109},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09316480159759521}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.670866072177887},{"id":"https://openalex.org/C147816474","wikidata":"https://www.wikidata.org/wiki/Q169525","display_name":"Protein engineering","level":3,"score":0.5883094668388367},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4941261112689972},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4624265730381012},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39140480756759644},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3439560830593109},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09316480159759521},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-025-01029-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01029-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01029-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:40450362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40450362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0deea5291728489a804e26e833dbb9a8","is_oa":true,"landing_page_url":"https://doaj.org/article/0deea5291728489a804e26e833dbb9a8","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-19 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12126886","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12126886","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-01029-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01029-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01029-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1419670400","display_name":null,"funder_award_id":"GB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G1633987393","display_name":null,"funder_award_id":"SPP2363","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G1650125035","display_name":null,"funder_award_id":"B-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2594507774","display_name":null,"funder_award_id":"BU055P20","funder_id":"https://openalex.org/F4320328351","funder_display_name":"Junta de Castilla y Le\u00f3n"},{"id":"https://openalex.org/G3429648993","display_name":null,"funder_award_id":"PID202","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3681454997","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4042783231","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4126322094","display_name":null,"funder_award_id":"01100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4816244515","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G495392292","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5374134968","display_name":null,"funder_award_id":"European Social Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5421974903","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5430700880","display_name":null,"funder_award_id":"PID2020-119894GB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G549563511","display_name":null,"funder_award_id":"EDU/875/2021","funder_id":"https://openalex.org/F4320325114","funder_display_name":"Consejer\u00eda de Educaci\u00f3n, Junta de Castilla y Le\u00f3n"},{"id":"https://openalex.org/G5550858994","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5805502524","display_name":null,"funder_award_id":"PID2020","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G6589649124","display_name":null,"funder_award_id":"PID2020-","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G661330594","display_name":null,"funder_award_id":"00110","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6685425346","display_name":null,"funder_award_id":"0011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G695244822","display_name":null,"funder_award_id":"2021/00001/007/001/018","funder_id":"https://openalex.org/F4320319138","funder_display_name":"Universidad de Burgos"},{"id":"https://openalex.org/G6960233618","display_name":null,"funder_award_id":"BU055P20 (JCyL/FEDER, UE)","funder_id":"https://openalex.org/F4320328351","funder_display_name":"Junta de Castilla y Le\u00f3n"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7115649624","display_name":null,"funder_award_id":"FEDER, UE","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7172979184","display_name":null,"funder_award_id":"JCyL/FEDER","funder_id":"https://openalex.org/F4320328351","funder_display_name":"Junta de Castilla y Le\u00f3n"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7393411760","display_name":null,"funder_award_id":"EDU/875/2021","funder_id":"https://openalex.org/F4320328351","funder_display_name":"Junta de Castilla y Le\u00f3n"},{"id":"https://openalex.org/G7515390661","display_name":null,"funder_award_id":"PID2020-119894GB-I00/AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G8055432103","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G8260616629","display_name":null,"funder_award_id":"011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320312331","display_name":"Banco Santander","ror":"https://ror.org/017d1hs72"},{"id":"https://openalex.org/F4320319138","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320325114","display_name":"Consejer\u00eda de Educaci\u00f3n, Junta de Castilla y Le\u00f3n","ror":"https://ror.org/02s8dab97"},{"id":"https://openalex.org/F4320328351","display_name":"Junta de Castilla y Le\u00f3n","ror":"https://ror.org/02s8dab97"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410915192.pdf","grobid_xml":"https://content.openalex.org/works/W4410915192.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W88719000","https://openalex.org/W1612624539","https://openalex.org/W2016023958","https://openalex.org/W2048679005","https://openalex.org/W2102461176","https://openalex.org/W2106401878","https://openalex.org/W2133556223","https://openalex.org/W2138122982","https://openalex.org/W2156470306","https://openalex.org/W2245592118","https://openalex.org/W2956569764","https://openalex.org/W2980789587","https://openalex.org/W2984353870","https://openalex.org/W3034479940","https://openalex.org/W3081655415","https://openalex.org/W3144239152","https://openalex.org/W3178295718","https://openalex.org/W3188793838","https://openalex.org/W4206087583","https://openalex.org/W4206948363","https://openalex.org/W4238893454","https://openalex.org/W4239423838","https://openalex.org/W4256060553","https://openalex.org/W4281744132","https://openalex.org/W4290803500","https://openalex.org/W4292402161","https://openalex.org/W4309474814","https://openalex.org/W4387601539","https://openalex.org/W6735657100"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Protein":[0],"fitness":[1],"prediction":[2],"plays":[3],"a":[4,46,57,105,148,200],"crucial":[5],"role":[6],"in":[7,64,77,122,230],"the":[8,15,19,24,31,73,84,119,123,128,131,135,145,192,217,221],"advancement":[9,215],"of":[10,18,27,34,71,130,137,147,196,225],"protein":[11,20,35,211],"engineering":[12,212],"endeavours.":[13],"However,":[14],"combinatorial":[16],"complexity":[17],"sequence":[21,149],"space":[22],"and":[23,100,103,171,181,206,223,232],"limited":[25],"availability":[26],"assay-labelled":[28],"data":[29],"hinder":[30],"efficient":[32],"optimization":[33],"properties.":[36],"Data-driven":[37],"strategies":[38,93],"utilizing":[39],"machine":[40],"learning":[41,97],"methods":[42,185],"have":[43],"emerged":[44],"as":[45],"promising":[47],"solution,":[48],"yet":[49],"their":[50],"dependence":[51],"on":[52,95,153],"labelled":[53,139],"training":[54,85],"datasets":[55,110],"poses":[56],"significant":[58],"obstacle.":[59],"To":[60,87],"overcome":[61],"this":[62,65,197],"challenge,":[63],"work,":[66],"we":[67,90],"explore":[68],"various":[69],"ways":[70],"introducing":[72],"latent":[74],"information":[75,120,167],"present":[76,121],"evolutionarily":[78],"related":[79],"sequences":[80,125,140],"(homologous":[81],"sequences)":[82],"into":[83],"process.":[86],"do":[88],"so,":[89],"establish":[91],"several":[92],"based":[94,152],"semi-supervised":[96,183],"(unsupervised":[98],"pre-processing":[99],"wrapper":[101,184],"methods)":[102],"perform":[104],"comprehensive":[106],"comparison":[107],"using":[108,118],"19":[109],"containing":[111],"protein-fitness":[112],"pairs.":[113],"Our":[114],"findings":[115],"reveal":[116],"that":[117,164],"homologous":[124],"can":[126],"improve":[127],"performance":[129,194],"models,":[132],"especially":[133],"when":[134],"number":[136],"available":[138],"is":[141],"considerably":[142],"low.":[143],"Specifically,":[144],"combination":[146],"encoding":[150],"method":[151],"Direct":[154],"Coupling":[155],"Analysis":[156],"(DCA),":[157],"with":[158,168],"MERGE":[159],"(a":[160],"hybrid":[161],"regression":[162],"framework":[163],"combines":[165],"evolutionary":[166],"supervised":[169],"learning)":[170],"an":[172],"SVM":[173],"regressor,":[174],"outperforms":[175],"other":[176,182],"encodings":[177],"(PAM250,":[178],"UniRep,":[179],"eUniRep)":[180],"(Tri-Training":[186],"Regressor,":[187],"Co-Training":[188],"Regressor).":[189],"In":[190],"summary,":[191],"demonstrated":[193],"gains":[195],"strategy":[198],"mark":[199],"substantial":[201],"leap":[202],"towards":[203],"more":[204],"robust":[205],"reliable":[207],"predictive":[208],"models":[209],"for":[210,227],"tasks.":[213],"This":[214],"holds":[216],"potential":[218],"to":[219],"streamline":[220],"design":[222],"optimisation":[224],"proteins":[226],"diverse":[228],"applications":[229],"biotechnology":[231],"therapeutics.":[233]},"counts_by_year":[],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
