{"id":"https://openalex.org/W4410339324","doi":"https://doi.org/10.1186/s13321-025-01013-4","title":"Generalizable, fast, and accurate DeepQSPR with fastprop","display_name":"Generalizable, fast, and accurate DeepQSPR with fastprop","publication_year":2025,"publication_date":"2025-05-13","ids":{"openalex":"https://openalex.org/W4410339324","doi":"https://doi.org/10.1186/s13321-025-01013-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/40361252"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-01013-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01013-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01013-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01013-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058636321","display_name":"Jackson Burns","orcid":"https://orcid.org/0000-0002-0657-9426"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jackson W. Burns","raw_affiliation_strings":["Massachusetts Institute of Technology, Cambridge, MA, USA"],"raw_orcid":"https://orcid.org/0000-0002-0657-9426","affiliations":[{"raw_affiliation_string":"Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051475129","display_name":"William H. Green","orcid":"https://orcid.org/0000-0003-2603-9694"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William H. Green","raw_affiliation_strings":["Massachusetts Institute of Technology, Cambridge, MA, USA. whgreen@mit.edu"],"raw_orcid":"https://orcid.org/0000-0003-2603-9694","affiliations":[{"raw_affiliation_string":"Massachusetts Institute of Technology, Cambridge, MA, USA. whgreen@mit.edu","institution_ids":["https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5058636321"],"corresponding_institution_ids":["https://openalex.org/I63966007"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":9.2799,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.98001275,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"73","last_page":"73"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8865103721618652},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8194462060928345},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6599401831626892},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.638450562953949},{"id":"https://openalex.org/keywords/generality","display_name":"Generality","score":0.6059319972991943},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5850210189819336},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5806267857551575},{"id":"https://openalex.org/keywords/quantitative-structure\u2013activity-relationship","display_name":"Quantitative structure\u2013activity relationship","score":0.5524439811706543},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5374107956886292},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.49628740549087524},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47876301407814026},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4679875373840332},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4443149268627167},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.4331696927547455},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.4258001446723938},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09871581196784973}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8865103721618652},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8194462060928345},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6599401831626892},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.638450562953949},{"id":"https://openalex.org/C2780767217","wikidata":"https://www.wikidata.org/wiki/Q5532421","display_name":"Generality","level":2,"score":0.6059319972991943},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5850210189819336},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5806267857551575},{"id":"https://openalex.org/C164126121","wikidata":"https://www.wikidata.org/wiki/Q766383","display_name":"Quantitative structure\u2013activity relationship","level":2,"score":0.5524439811706543},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5374107956886292},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.49628740549087524},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47876301407814026},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4679875373840332},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4443149268627167},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.4331696927547455},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.4258001446723938},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09871581196784973},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13321-025-01013-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01013-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01013-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:40361252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40361252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:dspace.mit.edu:1721.1/159875","is_oa":true,"landing_page_url":"https://hdl.handle.net/1721.1/159875","pdf_url":"https://dspace.mit.edu/bitstream/1721.1/159875/2/s13321-025-01013-4.pdf","source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Springer Science and Business Media LLC","raw_type":"http://purl.org/eprint/type/JournalArticle"},{"id":"pmh:oai:doaj.org/article:47901b5f0f2a43b28e1d438759638f2c","is_oa":true,"landing_page_url":"https://doaj.org/article/47901b5f0f2a43b28e1d438759638f2c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-11 (2025)","raw_type":"article"},{"id":"pmh:oai:osti.gov:2565981","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2565981","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12076996","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12076996","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-01013-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01013-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01013-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G4436370977","display_name":null,"funder_award_id":"DE-SC0023112","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320309369","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410339324.pdf","grobid_xml":"https://content.openalex.org/works/W4410339324.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1780364926","https://openalex.org/W1966850681","https://openalex.org/W1975147762","https://openalex.org/W1999798000","https://openalex.org/W2040651998","https://openalex.org/W2080635178","https://openalex.org/W2317696202","https://openalex.org/W2318794083","https://openalex.org/W2594183968","https://openalex.org/W2606363443","https://openalex.org/W2777670415","https://openalex.org/W2791355014","https://openalex.org/W2907473220","https://openalex.org/W2955196750","https://openalex.org/W2962862931","https://openalex.org/W2966357564","https://openalex.org/W3023042104","https://openalex.org/W3030978062","https://openalex.org/W3034516664","https://openalex.org/W3093652827","https://openalex.org/W3102797483","https://openalex.org/W3181995918","https://openalex.org/W4213151958","https://openalex.org/W4226166856","https://openalex.org/W4281553035","https://openalex.org/W4372354554","https://openalex.org/W4385564608","https://openalex.org/W4386992798","https://openalex.org/W4387323304","https://openalex.org/W4388376949","https://openalex.org/W4388857673","https://openalex.org/W4389159869","https://openalex.org/W4390136275","https://openalex.org/W4390221451","https://openalex.org/W4391229252","https://openalex.org/W4391541076","https://openalex.org/W4394686508","https://openalex.org/W4395481566","https://openalex.org/W4396678548","https://openalex.org/W4405183894"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W2045049461","https://openalex.org/W1978893398","https://openalex.org/W4310278675","https://openalex.org/W2201908702","https://openalex.org/W4381094582","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272"],"abstract_inverted_index":{"Quantitative":[0],"Structure-Property":[1],"Relationship":[2],"studies":[3],"(QSPR),":[4],"often":[5],"referred":[6],"to":[7,12,37,40,130,139],"interchangeably":[8],"as":[9],"QSAR,":[10],"seek":[11],"establish":[13],"a":[14,29,41,77,112,121,148],"mapping":[15],"between":[16],"molecular":[17,125],"structure":[18],"and":[19,60,88,92,115,153,163,178,205,208],"an":[20],"arbitrary":[21],"target":[22],"property.":[23],"Historically":[24],"this":[25],"was":[26],"done":[27],"on":[28,134],"target-by-target":[30],"basis":[31],"with":[32,58,127,199],"new":[33],"descriptors":[34,126],"being":[35],"devised":[36],"specifically":[38],"map":[39],"given":[42],"target.":[43],"Today":[44],"software":[45,113],"packages":[46],"exist":[47],"that":[48,119],"calculate":[49],"thousands":[50,142],"of":[51,103,124,141,143,157,165,192],"these":[52],"descriptors,":[53],"enabling":[54],"general":[55,116],"modeling":[56],"typically":[57],"classical":[59],"machine":[61],"learning":[62,74,129],"methods.":[63],"Also":[64],"present":[65],"today":[66],"are":[67],"learned":[68],"representation":[69,79],"methods":[70,182],"in":[71,176],"which":[72],"deep":[73,128],"models":[75],"generate":[76],"target-specific":[78],"during":[80],"training.":[81],"The":[82],"former":[83],"requires":[84],"less":[85],"training":[86,162],"data":[87],"offers":[89,97],"improved":[90],"speed":[91,177],"interpretability":[93,179],"while":[94,100,183],"the":[95,101,104,161,193],"latter":[96],"excellent":[98],"generality,":[99],"intersection":[102],"two":[105],"remains":[106],"under-explored.":[107],"This":[108,172],"paper":[109],"introduces":[110],"fastprop,":[111],"package":[114],"Deep-QSPR":[117],"framework":[118],"combines":[120],"cogent":[122],"set":[123,156],"achieve":[131],"state-of-the-art":[132],"performance":[133,189],"datasets":[135],"ranging":[136],"from":[137],"tens":[138,140],"molecules.":[144],"fastprop":[145,196],"provides":[146],"both":[147],"user-friendly":[149],"Command":[150],"Line":[151],"Interface":[152],"highly":[154],"interoperable":[155],"Python":[158],"modules":[159],"for":[160,169],"deployment":[164],"feedforward":[166],"neural":[167],"networks":[168],"property":[170],"prediction.":[171],"approach":[173],"yields":[174],"improvements":[175],"over":[180],"existing":[181],"statistically":[184],"equaling":[185],"or":[186],"exceeding":[187],"their":[188],"across":[190],"most":[191],"tested":[194],"benchmarks.":[195],"is":[197,206],"designed":[198],"Research":[200],"Software":[201],"Engineering":[202],"best":[203],"practices":[204],"free":[207],"open":[209],"source,":[210],"hosted":[211],"at":[212],"github.com/jacksonburns/fastprop.":[213]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
