{"id":"https://openalex.org/W4409922207","doi":"https://doi.org/10.1186/s13321-025-01010-7","title":"LAGNet: better electron density prediction for LCAO-based data and drug-like substances","display_name":"LAGNet: better electron density prediction for LCAO-based data and drug-like substances","publication_year":2025,"publication_date":"2025-04-29","ids":{"openalex":"https://openalex.org/W4409922207","doi":"https://doi.org/10.1186/s13321-025-01010-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/40301997"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-01010-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01010-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01010-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01010-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033352189","display_name":"Konstantin Ushenin","orcid":"https://orcid.org/0000-0003-0575-3506"},"institutions":[{"id":"https://openalex.org/I130823665","display_name":"Ural Federal University","ror":"https://ror.org/00hs7dr46","country_code":"RU","type":"education","lineage":["https://openalex.org/I130823665"]},{"id":"https://openalex.org/I58957048","display_name":"Yandex (Russia)","ror":"https://ror.org/04dbch786","country_code":"RU","type":"company","lineage":["https://openalex.org/I58957048"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Konstantin Ushenin","raw_affiliation_strings":["AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation. konstantin.ushenin@urfu.ru","Ural Federal University, Mira st., Yekaterinburg, 620002, Russian Federation. konstantin.ushenin@urfu.ru"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation. konstantin.ushenin@urfu.ru","institution_ids":["https://openalex.org/I58957048"]},{"raw_affiliation_string":"Ural Federal University, Mira st., Yekaterinburg, 620002, Russian Federation. konstantin.ushenin@urfu.ru","institution_ids":["https://openalex.org/I130823665"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082532694","display_name":"Kuzma Khrabrov","orcid":"https://orcid.org/0000-0002-0446-6751"},"institutions":[{"id":"https://openalex.org/I4210155741","display_name":"Academician Pilyugin Center","ror":"https://ror.org/04a19s309","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210155741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Kuzma Khrabrov","raw_affiliation_strings":["AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation","institution_ids":["https://openalex.org/I4210155741"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088630233","display_name":"Artem Tsypin","orcid":"https://orcid.org/0000-0002-0754-759X"},"institutions":[{"id":"https://openalex.org/I4210155741","display_name":"Academician Pilyugin Center","ror":"https://ror.org/04a19s309","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210155741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Artem Tsypin","raw_affiliation_strings":["AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation","institution_ids":["https://openalex.org/I4210155741"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5099380821","display_name":"Anton Ber","orcid":null},"institutions":[{"id":"https://openalex.org/I4210155741","display_name":"Academician Pilyugin Center","ror":"https://ror.org/04a19s309","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210155741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Anton Ber","raw_affiliation_strings":["AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation","institution_ids":["https://openalex.org/I4210155741"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060379735","display_name":"Egor Rumiantsev","orcid":"https://orcid.org/0000-0001-8262-5685"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Egor Rumiantsev","raw_affiliation_strings":["\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Station Z, 1015, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Station Z, 1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019867253","display_name":"Artur Kadurin","orcid":"https://orcid.org/0000-0003-1482-9365"},"institutions":[{"id":"https://openalex.org/I4210101868","display_name":"Institute for System Programming","ror":"https://ror.org/017ef8252","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210101868","https://openalex.org/I4210124601"]},{"id":"https://openalex.org/I4210155741","display_name":"Academician Pilyugin Center","ror":"https://ror.org/04a19s309","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210155741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Artur Kadurin","raw_affiliation_strings":["AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation","Institute of System Programming, Alexander Solzhenitsyn st., Moscow, 109004, Russian Federation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AIRI, Kutuzovskiy Prospect, Moscow, 121170, Russian Federation","institution_ids":["https://openalex.org/I4210155741"]},{"raw_affiliation_string":"Institute of System Programming, Alexander Solzhenitsyn st., Moscow, 109004, Russian Federation","institution_ids":["https://openalex.org/I4210101868"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":0.2739,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.43234937,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"17","issue":"1","first_page":"65","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6084241271018982},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4924860894680023},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4916267991065979},{"id":"https://openalex.org/keywords/linear-combination-of-atomic-orbitals","display_name":"Linear combination of atomic orbitals","score":0.4514915943145752},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3527555465698242},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.28120142221450806},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.24386361241340637},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.19311675429344177},{"id":"https://openalex.org/keywords/density-functional-theory","display_name":"Density functional theory","score":0.17228060960769653},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16426703333854675}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6084241271018982},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4924860894680023},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4916267991065979},{"id":"https://openalex.org/C53848692","wikidata":"https://www.wikidata.org/wiki/Q900666","display_name":"Linear combination of atomic orbitals","level":4,"score":0.4514915943145752},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3527555465698242},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.28120142221450806},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.24386361241340637},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.19311675429344177},{"id":"https://openalex.org/C152365726","wikidata":"https://www.wikidata.org/wiki/Q1048589","display_name":"Density functional theory","level":2,"score":0.17228060960769653},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16426703333854675},{"id":"https://openalex.org/C65956243","wikidata":"https://www.wikidata.org/wiki/Q2664086","display_name":"Basis set","level":3,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-025-01010-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01010-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01010-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:40301997","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40301997","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:14596765b5524cdbb80dd4bd6167e435","is_oa":true,"landing_page_url":"https://doaj.org/article/14596765b5524cdbb80dd4bd6167e435","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-24 (2025)","raw_type":"article"},{"id":"pmh:oai:infoscience.epfl.ch:20.500.14299/249809","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/249809","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"research article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12042566","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12042566","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-01010-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-01010-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-01010-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409922207.pdf","grobid_xml":"https://content.openalex.org/works/W4409922207.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1501145371","https://openalex.org/W1593532658","https://openalex.org/W1967853451","https://openalex.org/W2005210820","https://openalex.org/W2026444402","https://openalex.org/W2083222334","https://openalex.org/W2097311086","https://openalex.org/W2114704115","https://openalex.org/W2120145199","https://openalex.org/W2589280805","https://openalex.org/W2749566554","https://openalex.org/W2794822253","https://openalex.org/W2889703828","https://openalex.org/W2891365537","https://openalex.org/W2921533983","https://openalex.org/W3003257820","https://openalex.org/W3007178273","https://openalex.org/W3010508884","https://openalex.org/W3024385728","https://openalex.org/W3026102978","https://openalex.org/W3027308092","https://openalex.org/W3041598154","https://openalex.org/W3047387521","https://openalex.org/W3103145119","https://openalex.org/W3117372519","https://openalex.org/W3132373655","https://openalex.org/W3134184520","https://openalex.org/W3161704673","https://openalex.org/W3207040922","https://openalex.org/W3207919345","https://openalex.org/W3208412650","https://openalex.org/W4282053982","https://openalex.org/W4286588524","https://openalex.org/W4287163433","https://openalex.org/W4292738040","https://openalex.org/W4310570877","https://openalex.org/W4313545414","https://openalex.org/W4320002796","https://openalex.org/W4328096783","https://openalex.org/W4367174884","https://openalex.org/W4386067102","https://openalex.org/W4386251652","https://openalex.org/W4389040448","https://openalex.org/W4389761551","https://openalex.org/W4390013683","https://openalex.org/W4390103356","https://openalex.org/W4391488442","https://openalex.org/W4391670730","https://openalex.org/W4392597361","https://openalex.org/W4394854254","https://openalex.org/W4399439301","https://openalex.org/W4399911757","https://openalex.org/W4401011593"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W240279312","https://openalex.org/W408230997","https://openalex.org/W2024070910","https://openalex.org/W2055787000","https://openalex.org/W4242863617","https://openalex.org/W4246819835","https://openalex.org/W23118739"],"abstract_inverted_index":{"The":[0],"electron":[1,26,83,119,227],"density":[2,27,84,120,228],"is":[3,11,107,169],"an":[4],"important":[5],"object":[6],"in":[7,17],"quantum":[8,72],"chemistry":[9],"that":[10,98,164,212,241],"crucial":[12,108],"for":[13,69,85,109,174],"many":[14],"downstream":[15],"tasks":[16],"drug":[18,57],"design.":[19],"Recent":[20],"deep":[21],"learning":[22],"approaches":[23],"predict":[24],"the":[25,42,56,62,82,118,122,127,135,161,205,214,219,224,238,251],"around":[28],"a":[29,49,156,186],"molecule":[30,141],"from":[31],"atom":[32,35],"types":[33],"and":[34,88,145,172,177,195,207,231],"positions.":[36],"Most":[37],"of":[38,51,65,71,81,101,104,126,137,204,218,226],"these":[39],"methods":[40],"use":[41],"plane":[43],"wave":[44],"(PW)":[45],"numerical":[46],"method":[47],"as":[48],"source":[50],"ground-truth":[52],"training":[53,89,110],"data.":[54,113],"However,":[55],"design":[58],"field":[59],"mostly":[60],"uses":[61],"Linear":[63],"Combination":[64],"Atomic":[66],"Orbitals":[67],"(LCAO)":[68],"computation":[70],"properties.":[73],"In":[74],"this":[75],"study,":[76],"we":[77,154,165,236],"focus":[78],"on":[79,111,160,199,247],"prediction":[80],"drug-like":[86,175,248],"substances":[87,176,249],"neural":[90,197],"networks":[91],"with":[92,121,202],"LCAO-based":[93,112,200],"datasets.":[94],"Our":[95],"experiments":[96],"show":[97,211],"proper":[99],"handling":[100],"large":[102],"amplitudes":[103],"core":[105,187,193],"orbitals":[106,194],"We":[114,184,210],"propose":[115,155,185,237],"to":[116,133,190,243],"store":[117],"standard":[123,215],"grids":[124],"instead":[125,217],"uniform":[128,220],"grid.":[129],"This":[130],"allowed":[131],"us":[132],"reduce":[134,146],"number":[136,225],"probing":[138,229],"points":[139,230],"per":[140],"by":[142,150],"43":[143],"times":[144],"storage":[147,233],"space":[148],"requirements":[149],"8":[151],"times.":[152],"Finally,":[153,235],"novel":[157],"architecture":[158],"based":[159],"DeepDFT":[162,253],"model":[163,189,240],"name":[166],"LAGNet.":[167],"It":[168],"specifically":[170],"designed":[171],"tuned":[173],"$$\\nabla":[178],"^2$$":[179],"DFT":[180],"dataset.":[181],"Scientific":[182],"contribution":[183],"suppression":[188],"correctly":[191],"handle":[192],"train":[196],"network":[198],"data":[201,232],"atoms":[203],"3rd":[206],"4th":[208],"periods.":[209],"using":[213],"grid":[216,221],"drastically":[222],"reduces":[223],"requirements.":[234],"LAGNet":[239],"allows":[242],"get":[244],"better":[245],"results":[246],"than":[250],"equivariant":[252],"model.":[254]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
