{"id":"https://openalex.org/W4408969965","doi":"https://doi.org/10.1186/s13321-025-00983-9","title":"Three pillars for ensuring public access and integrity of chemical databases powering cheminformatics","display_name":"Three pillars for ensuring public access and integrity of chemical databases powering cheminformatics","publication_year":2025,"publication_date":"2025-03-28","ids":{"openalex":"https://openalex.org/W4408969965","doi":"https://doi.org/10.1186/s13321-025-00983-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/40156073"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-00983-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00983-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00983-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00983-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062051745","display_name":"Antony Williams","orcid":null},"institutions":[{"id":"https://openalex.org/I1302368450","display_name":"Environmental Protection Agency","ror":"https://ror.org/03tns0030","country_code":"US","type":"government","lineage":["https://openalex.org/I1302368450"]},{"id":"https://openalex.org/I1309191912","display_name":"Research Triangle Park Foundation","ror":"https://ror.org/03eqttr49","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309191912"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Antony J. Williams","raw_affiliation_strings":["Center for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, NC, 27711, USA. williams.antony@epa.gov","Center for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, NC, 27711, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, NC, 27711, USA. williams.antony@epa.gov","institution_ids":["https://openalex.org/I1302368450","https://openalex.org/I1309191912"]},{"raw_affiliation_string":"Center for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, NC, 27711, USA","institution_ids":["https://openalex.org/I1302368450","https://openalex.org/I1309191912"]}]},{"author_position":"last","author":{"id":null,"display_name":"Ann M. Richard","orcid":null},"institutions":[{"id":"https://openalex.org/I1302368450","display_name":"Environmental Protection Agency","ror":"https://ror.org/03tns0030","country_code":"US","type":"government","lineage":["https://openalex.org/I1302368450"]},{"id":"https://openalex.org/I1309191912","display_name":"Research Triangle Park Foundation","ror":"https://ror.org/03eqttr49","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309191912"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ann M. Richard","raw_affiliation_strings":["Center for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, NC, 27711, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, NC, 27711, USA","institution_ids":["https://openalex.org/I1302368450","https://openalex.org/I1309191912"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5062051745"],"corresponding_institution_ids":["https://openalex.org/I1302368450","https://openalex.org/I1309191912"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":13.7542,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.98261627,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"40","last_page":"40"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9587000012397766,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.9435787200927734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5834395289421082},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5507796406745911},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44222456216812134},{"id":"https://openalex.org/keywords/chemical-database","display_name":"Chemical database","score":0.42764461040496826},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3638530373573303},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2477177381515503}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.9435787200927734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5834395289421082},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5507796406745911},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44222456216812134},{"id":"https://openalex.org/C203394866","wikidata":"https://www.wikidata.org/wiki/Q2881060","display_name":"Chemical database","level":2,"score":0.42764461040496826},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3638530373573303},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2477177381515503},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-025-00983-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00983-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00983-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:40156073","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40156073","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:fa5416197b314072bee45624cac9ad37","is_oa":true,"landing_page_url":"https://doaj.org/article/fa5416197b314072bee45624cac9ad37","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11954203","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11954203","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-00983-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00983-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00983-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306107","display_name":"U.S. Environmental Protection Agency","ror":"https://ror.org/03tns0030"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408969965.pdf"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1546956326","https://openalex.org/W1976892175","https://openalex.org/W2057069496","https://openalex.org/W2136623753","https://openalex.org/W2302501749","https://openalex.org/W2412746331","https://openalex.org/W2473190403","https://openalex.org/W2769853272","https://openalex.org/W2887459817","https://openalex.org/W2955167367","https://openalex.org/W3082081167","https://openalex.org/W3097280976","https://openalex.org/W3139720451","https://openalex.org/W3209889301","https://openalex.org/W4321274994","https://openalex.org/W4404837471","https://openalex.org/W6926394490"],"related_works":["https://openalex.org/W2153037537","https://openalex.org/W2917626761","https://openalex.org/W2317928565","https://openalex.org/W3143892890","https://openalex.org/W2561309435","https://openalex.org/W2185159477","https://openalex.org/W2087762413","https://openalex.org/W2903373627","https://openalex.org/W158734140","https://openalex.org/W2988249053"],"abstract_inverted_index":{"Since":[0],"the":[1,4,12,56],"inception":[2],"of":[3,61],"Internet,":[5],"public":[6],"databases":[7],"disseminating":[8],"chemistry":[9,48],"data":[10],"to":[11,18],"community":[13],"have":[14],"proliferated":[15],"and":[16,20,43,59,63,68,74],"helped":[17],"support":[19],"encourage":[21],"a":[22,32],"burgeoning":[23],"interest":[24],"in":[25,34],"cheminformatics.":[26],"This":[27],"has":[28],"been":[29],"supported":[30],"by":[31,38,55],"shift":[33],"open":[35,64],"science,":[36],"exemplified":[37],"Open":[39,41,44],"Data,":[40],"Source,":[42],"Standards":[45],"(ODOSOS)":[46],"for":[47,72],"[":[49],"1":[50],"],":[51],"as":[52,54],"well":[53],"increasing":[57],"sophistication":[58],"availability":[60],"free":[62],"source":[65],"computational,":[66],"machine-learning,":[67],"artificial":[69],"intelligence":[70],"approaches":[71],"mining":[73],"modeling":[75],"chemical":[76],"structure":[77],"associated":[78],"data.":[79]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
