{"id":"https://openalex.org/W4408693859","doi":"https://doi.org/10.1186/s13321-025-00971-z","title":"Anticipating protein evolution with successor sequence predictor","display_name":"Anticipating protein evolution with successor sequence predictor","publication_year":2025,"publication_date":"2025-03-21","ids":{"openalex":"https://openalex.org/W4408693859","doi":"https://doi.org/10.1186/s13321-025-00971-z","pmid":"https://pubmed.ncbi.nlm.nih.gov/40119373"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-00971-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00971-z","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00971-z","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00971-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056822992","display_name":"Rayyan Tariq Khan","orcid":"https://orcid.org/0000-0003-4855-104X"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Rayyan Tariq Khan","raw_affiliation_strings":["International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051746135","display_name":"Pavel Kohout","orcid":"https://orcid.org/0000-0002-3957-7005"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Pavel Kohout","raw_affiliation_strings":["International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023686894","display_name":"Milo\u0161 Musil","orcid":"https://orcid.org/0000-0001-9373-7930"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]},{"id":"https://openalex.org/I60587646","display_name":"Brno University of Technology","ror":"https://ror.org/03613d656","country_code":"CZ","type":"education","lineage":["https://openalex.org/I60587646"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Milos Musil","raw_affiliation_strings":["Department of Information Systems, Faculty of Information Technology, Brno University of Technology, Brno, Czech Republic","International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Systems, Faculty of Information Technology, Brno University of Technology, Brno, Czech Republic","institution_ids":["https://openalex.org/I60587646"]},{"raw_affiliation_string":"International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5099080622","display_name":"Monika Rosinska","orcid":null},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I60587646","display_name":"Brno University of Technology","ror":"https://ror.org/03613d656","country_code":"CZ","type":"education","lineage":["https://openalex.org/I60587646"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Monika Rosinska","raw_affiliation_strings":["Department of Information Systems, Faculty of Information Technology, Brno University of Technology, Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Systems, Faculty of Information Technology, Brno University of Technology, Brno, Czech Republic","institution_ids":["https://openalex.org/I60587646"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040585952","display_name":"Ji\u0159\u0131\u0301 Damborsk\u00fd","orcid":"https://orcid.org/0000-0002-7848-8216"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jiri Damborsky","raw_affiliation_strings":["International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042501458","display_name":"Stanislav Mazurenko","orcid":"https://orcid.org/0000-0003-3659-4819"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210114565","display_name":"International Clinical Research Center, St. Anne's University Hospital Brno","ror":"https://ror.org/027v97282","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Stanislav Mazurenko","raw_affiliation_strings":["International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic. mazurenko@mail.muni.cz","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic. mazurenko@mail.muni.cz","International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic. mazurenko@mail.muni.cz","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic. mazurenko@mail.muni.cz","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003693498","display_name":"David Bedn\u00e1\u0159","orcid":"https://orcid.org/0000-0002-6803-0340"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210114565","display_name":"International Clinical Research Center, St. Anne's University Hospital Brno","ror":"https://ror.org/027v97282","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"David Bednar","raw_affiliation_strings":["International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic. davidbednar1208@gmail.com","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic. davidbednar1208@gmail.com","International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic. davidbednar1208@gmail.com","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic. davidbednar1208@gmail.com","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003693498","https://openalex.org/A5042501458"],"corresponding_institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210102302","https://openalex.org/I4210114565","https://openalex.org/I4210136987"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.031169,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"17","issue":"1","first_page":"34","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/successor-cardinal","display_name":"Successor cardinal","score":0.9477198719978333},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6811856031417847},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6720633506774902},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.6399639248847961},{"id":"https://openalex.org/keywords/thermostability","display_name":"Thermostability","score":0.627926230430603},{"id":"https://openalex.org/keywords/directed-evolution","display_name":"Directed evolution","score":0.6138014197349548},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5988754034042358},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4824105501174927},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4682738780975342},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.43935197591781616},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4391508996486664},{"id":"https://openalex.org/keywords/protein-design","display_name":"Protein design","score":0.4327540993690491},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36272186040878296},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36154991388320923},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3609326481819153},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29041987657546997},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.27310502529144287},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1605718731880188},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12331932783126831},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12123876810073853},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08791565895080566}],"concepts":[{"id":"https://openalex.org/C75306776","wikidata":"https://www.wikidata.org/wiki/Q7632662","display_name":"Successor cardinal","level":2,"score":0.9477198719978333},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6811856031417847},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6720633506774902},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.6399639248847961},{"id":"https://openalex.org/C2781216036","wikidata":"https://www.wikidata.org/wiki/Q902494","display_name":"Thermostability","level":3,"score":0.627926230430603},{"id":"https://openalex.org/C9418097","wikidata":"https://www.wikidata.org/wiki/Q440681","display_name":"Directed evolution","level":4,"score":0.6138014197349548},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5988754034042358},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4824105501174927},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4682738780975342},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.43935197591781616},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4391508996486664},{"id":"https://openalex.org/C152769699","wikidata":"https://www.wikidata.org/wiki/Q410814","display_name":"Protein design","level":3,"score":0.4327540993690491},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36272186040878296},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36154991388320923},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3609326481819153},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29041987657546997},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.27310502529144287},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1605718731880188},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12331932783126831},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12123876810073853},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08791565895080566},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-025-00971-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00971-z","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00971-z","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:40119373","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40119373","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:dccb6e06d8ea4b9287c7c05c865fa42f","is_oa":true,"landing_page_url":"https://doaj.org/article/dccb6e06d8ea4b9287c7c05c865fa42f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-12 (2025)","raw_type":"article"},{"id":"pmh:oai:is.muni.cz:2507625","is_oa":true,"landing_page_url":"https://is.muni.cz/publication/2507625","pdf_url":null,"source":{"id":"https://openalex.org/S4306400102","display_name":"Ve\u0159ejn\u00e9 slu\u017eby Informa\u010dn\u00edho syst\u00e9mu (Masarykiana Brunensis Universitas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11927200","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11927200","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-00971-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00971-z","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00971-z","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1564040493","display_name":"RECETOX Research Infrastructure","funder_award_id":"LM2023069","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G4893959512","display_name":null,"funder_award_id":"FIT-S-23-8209","funder_id":"https://openalex.org/F4320336543","funder_display_name":"Fakulta Informa\u010dn\u00edch Technologi\u00ed, Vysok\u00e9 U\u010den\u00ed Technick\u00e9 v Brn\u011b"},{"id":"https://openalex.org/G588421728","display_name":null,"funder_award_id":"857560","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"}],"funders":[{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320335254","display_name":"Horizon 2020","ror":null},{"id":"https://openalex.org/F4320336543","display_name":"Fakulta Informa\u010dn\u00edch Technologi\u00ed, Vysok\u00e9 U\u010den\u00ed Technick\u00e9 v Brn\u011b","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408693859.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W256190298","https://openalex.org/W1810634920","https://openalex.org/W1984501109","https://openalex.org/W1991767154","https://openalex.org/W1997064329","https://openalex.org/W2014731953","https://openalex.org/W2023919356","https://openalex.org/W2035146707","https://openalex.org/W2062210712","https://openalex.org/W2065206694","https://openalex.org/W2071636507","https://openalex.org/W2080727048","https://openalex.org/W2141052558","https://openalex.org/W2143197682","https://openalex.org/W2146341019","https://openalex.org/W2157149092","https://openalex.org/W2158230102","https://openalex.org/W2169079604","https://openalex.org/W2588381756","https://openalex.org/W2589123659","https://openalex.org/W2606510460","https://openalex.org/W2710675085","https://openalex.org/W2897344260","https://openalex.org/W2904486674","https://openalex.org/W2911390449","https://openalex.org/W2956569764","https://openalex.org/W2969819767","https://openalex.org/W3009307274","https://openalex.org/W3097383497","https://openalex.org/W3104081477","https://openalex.org/W3115284089","https://openalex.org/W3164145451","https://openalex.org/W4213345021","https://openalex.org/W4213432439","https://openalex.org/W4293353616","https://openalex.org/W4308649286","https://openalex.org/W4319296017","https://openalex.org/W4362510805","https://openalex.org/W4388244982","https://openalex.org/W4403771850","https://openalex.org/W4404541678","https://openalex.org/W4407519722"],"related_works":["https://openalex.org/W2042181696","https://openalex.org/W2028113659","https://openalex.org/W2157570659","https://openalex.org/W2371711580","https://openalex.org/W2091714383","https://openalex.org/W4379768636","https://openalex.org/W2994898071","https://openalex.org/W2964410293","https://openalex.org/W3215076145","https://openalex.org/W2047083294"],"abstract_inverted_index":{"The":[0,149,179],"quest":[1],"to":[2,44,144],"predict":[3],"and":[4,17,59,95,129,161,229],"understand":[5],"protein":[6,81,87,141,184,223,247],"evolution":[7,26,88,185,238],"has":[8],"been":[9],"hindered":[10],"by":[11,89,118,192],"limitations":[12],"on":[13,102,235],"both":[14],"the":[15,18,33,37,47,65,152,162,188],"theoretical":[16,23],"experimental":[19,42],"fronts.":[20],"Most":[21],"existing":[22],"models":[24,204],"of":[25,39,51,151,164],"are":[27,57],"descriptive,":[28],"rather":[29],"than":[30],"predictive,":[31],"leaving":[32],"final":[34],"modifications":[35],"in":[36,79,105,200],"hands":[38],"researchers.":[40],"Existing":[41],"techniques":[43,239],"help":[45],"probe":[46],"evolutionary":[48,93,205],"sequence":[49,67,75,195],"space":[50],"proteins,":[52],"such":[53,125,225],"as":[54,70,126,138,226],"directed":[55,237],"evolution,":[56],"resource-intensive":[58,236],"require":[60],"specialised":[61,116],"skills.":[62],"We":[63],"present":[64],"successor":[66],"predictor":[68,76],"(SSP)":[69],"an":[71,78,171],"innovative":[72],"solution.":[73],"Successor":[74,131,153,180],"is":[77,156],"silico":[80,201],"design":[82,163],"method":[83,232],"that":[84,106,121,203,221],"mimics":[85],"laboratory-based":[86],"reconstructing":[90],"a":[91,139,198,242],"protein's":[92],"history":[94,107],"suggesting":[96],"future":[97,217],"amino":[98,189,218],"acid":[99,190,219],"substitutions":[100,220],"based":[101],"trends":[103,206],"observed":[104],"through":[108,207],"carefully":[109],"selected":[110,208],"physicochemical":[111,209],"descriptors.":[112,210],"This":[113,231],"approach":[114,202],"enhances":[115],"proteins":[117],"predicting":[119],"mutations":[120,165],"improve":[122],"desired":[123],"properties,":[124],"thermostability,":[127,227],"activity,":[128,228],"solubility.":[130,230],"Sequence":[132,154,181],"Predictor":[133,155,182],"can":[134,215],"thus":[135],"be":[136,167],"used":[137],"general":[140],"engineering":[142],"tool":[143,245],"develop":[145],"practically":[146],"useful":[147],"proteins.":[148],"code":[150],"provided":[157],"at":[158,187],"https://github.com/loschmidt/successor-sequence-predictor":[159],",":[160],"will":[166],"also":[168],"possible":[169],"via":[170],"easy-to-use":[172],"web":[173],"server":[174],"https://loschmidt.chemi.muni.cz/fireprotasr/":[175],".":[176],"SCIENTIFIC":[177],"CONTRIBUTION:":[178],"advances":[183],"prediction":[186],"level":[191],"integrating":[193],"ancestral":[194],"reconstruction":[196],"with":[197],"novel":[199],"Unlike":[211],"prior":[212],"work,":[213],"SSP":[214],"forecast":[216],"enhance":[222],"properties":[224],"reduces":[233],"reliance":[234],"while":[240],"providing":[241],"generalizable,":[243],"predictive":[244],"for":[246],"engineering.":[248]},"counts_by_year":[],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
