{"id":"https://openalex.org/W4407923247","doi":"https://doi.org/10.1186/s13321-025-00967-9","title":"kMoL: an open-source machine and federated learning library for drug discovery","display_name":"kMoL: an open-source machine and federated learning library for drug discovery","publication_year":2025,"publication_date":"2025-02-25","ids":{"openalex":"https://openalex.org/W4407923247","doi":"https://doi.org/10.1186/s13321-025-00967-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/40001146"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-00967-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00967-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00967-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00967-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057353089","display_name":"Romeo Cozac","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Romeo Cozac","raw_affiliation_strings":["Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan. romeo.cozac@elix-inc.com","Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan"],"affiliations":[{"raw_affiliation_string":"Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan. romeo.cozac@elix-inc.com","institution_ids":[]},{"raw_affiliation_string":"Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005228606","display_name":"Haris Hasi\u0107","orcid":"https://orcid.org/0000-0001-9962-008X"},"institutions":[{"id":"https://openalex.org/I117963711","display_name":"Kuban State University","ror":"https://ror.org/01yqewm58","country_code":"RU","type":"education","lineage":["https://openalex.org/I117963711"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Haris Hasic","raw_affiliation_strings":["Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan"],"affiliations":[{"raw_affiliation_string":"Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","institution_ids":["https://openalex.org/I117963711"]},{"raw_affiliation_string":"Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084854051","display_name":"Jun Jin Choong","orcid":"https://orcid.org/0000-0001-6078-1636"},"institutions":[{"id":"https://openalex.org/I117963711","display_name":"Kuban State University","ror":"https://ror.org/01yqewm58","country_code":"RU","type":"education","lineage":["https://openalex.org/I117963711"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Jun Jin Choong","raw_affiliation_strings":["Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan"],"affiliations":[{"raw_affiliation_string":"Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","institution_ids":["https://openalex.org/I117963711"]},{"raw_affiliation_string":"Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016370550","display_name":"Vincent Richard","orcid":"https://orcid.org/0000-0003-0590-0158"},"institutions":[{"id":"https://openalex.org/I117963711","display_name":"Kuban State University","ror":"https://ror.org/01yqewm58","country_code":"RU","type":"education","lineage":["https://openalex.org/I117963711"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Vincent Richard","raw_affiliation_strings":["Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan"],"affiliations":[{"raw_affiliation_string":"Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","institution_ids":["https://openalex.org/I117963711"]},{"raw_affiliation_string":"Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116157344","display_name":"Loic Beheshti","orcid":null},"institutions":[{"id":"https://openalex.org/I117963711","display_name":"Kuban State University","ror":"https://ror.org/01yqewm58","country_code":"RU","type":"education","lineage":["https://openalex.org/I117963711"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Loic Beheshti","raw_affiliation_strings":["Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan"],"affiliations":[{"raw_affiliation_string":"Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","institution_ids":["https://openalex.org/I117963711"]},{"raw_affiliation_string":"Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116415183","display_name":"Cyrille Froehlich","orcid":null},"institutions":[{"id":"https://openalex.org/I117963711","display_name":"Kuban State University","ror":"https://ror.org/01yqewm58","country_code":"RU","type":"education","lineage":["https://openalex.org/I117963711"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Cyrille Froehlich","raw_affiliation_strings":["Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan"],"affiliations":[{"raw_affiliation_string":"Elix, Inc., 8-34 Yonbancho, Chiyoda-ku, Tokyo, 102-0081, Japan","institution_ids":["https://openalex.org/I117963711"]},{"raw_affiliation_string":"Elix, Inc., 8\u201334 Yonbancho, Chiyoda-ku, Tokyo, 102\u20130081, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027799892","display_name":"Takuto Koyama","orcid":"https://orcid.org/0000-0002-9569-8370"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takuto Koyama","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053913367","display_name":"Shigeyuki Matsumoto","orcid":"https://orcid.org/0000-0001-9329-6362"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shigeyuki Matsumoto","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013489463","display_name":"Ryosuke Kojima","orcid":"https://orcid.org/0000-0003-1095-8864"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ryosuke Kojima","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043360512","display_name":"Hiroaki Iwata","orcid":"https://orcid.org/0000-0001-9791-0008"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroaki Iwata","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112910789","display_name":"Aki Hasegawa","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Aki Hasegawa","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045301685","display_name":"Takao Otsuka","orcid":"https://orcid.org/0000-0002-8199-6991"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takao Otsuka","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046211758","display_name":"Yasushi Okuno","orcid":"https://orcid.org/0000-0003-3596-4208"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yasushi Okuno","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan. okuno.yasushi.4c@kyoto-u.ac.jp","Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606-8507, Japan. okuno.yasushi.4c@kyoto-u.ac.jp","institution_ids":[]},{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Shogoin-kawaharacho, Sakyo-ku, Kyoto, 606\u20138507, Japan","institution_ids":["https://openalex.org/I22299242"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5057353089"],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":13.1158,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.98693729,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9722999930381775,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8276342153549194},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5955867171287537},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5077818036079407},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4271965026855469},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.4271708130836487},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1609201431274414},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10818341374397278}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8276342153549194},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5955867171287537},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5077818036079407},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4271965026855469},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.4271708130836487},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1609201431274414},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10818341374397278},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-025-00967-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00967-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00967-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:40001146","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40001146","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:irdb.nii.ac.jp:01221:0006697069","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/292637","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:94e5d65782d34c2092dae0abf0605d39","is_oa":true,"landing_page_url":"https://doaj.org/article/94e5d65782d34c2092dae0abf0605d39","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-15 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11854109","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11854109","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-00967-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00967-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00967-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.46000000834465027,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4407923247.pdf"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1984994707","https://openalex.org/W1988037271","https://openalex.org/W1999798000","https://openalex.org/W2027595342","https://openalex.org/W2066532920","https://openalex.org/W2194775991","https://openalex.org/W2276859037","https://openalex.org/W2558999090","https://openalex.org/W2594183968","https://openalex.org/W2751756351","https://openalex.org/W2791092480","https://openalex.org/W2911293880","https://openalex.org/W2912636151","https://openalex.org/W2945827377","https://openalex.org/W2949676527","https://openalex.org/W2962810718","https://openalex.org/W2968734407","https://openalex.org/W2986404471","https://openalex.org/W2997997679","https://openalex.org/W3101553402","https://openalex.org/W3172018708","https://openalex.org/W3186401068","https://openalex.org/W3189831819","https://openalex.org/W4205228770","https://openalex.org/W4213077304","https://openalex.org/W4214868967","https://openalex.org/W4294969138","https://openalex.org/W4323304388","https://openalex.org/W4365455552","https://openalex.org/W4382318866","https://openalex.org/W4384397860","https://openalex.org/W4386256707","https://openalex.org/W4395047316","https://openalex.org/W4401852744","https://openalex.org/W6600194071","https://openalex.org/W6602311867","https://openalex.org/W6764285456","https://openalex.org/W6810999931"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"Machine":[0],"learning":[1,76,81,100,136,176,184,221,226,266,274],"is":[2,53,72,126,195,211],"quickly":[3],"becoming":[4],"integral":[5],"to":[6,33,37,65,84,118,141,155],"drug":[7,191,249,281],"discovery":[8,192,250,282],"pipelines,":[9],"particularly":[10],"quantitative":[11],"structure-activity":[12],"relationship":[13],"(QSAR)":[14],"and":[15,19,60,69,98,115,133,145,158,214,232],"absorption,":[16],"distribution,":[17],"metabolism,":[18],"excretion":[20],"(ADME)":[21],"tasks.":[22],"Graph":[23],"Convolutional":[24],"Network":[25],"(GCN)":[26],"models":[27,50,185,275],"have":[28],"proven":[29],"especially":[30],"promising":[31],"due":[32],"their":[34],"inherent":[35],"ability":[36,154],"model":[38,67,93],"molecular":[39],"structures":[40],"using":[41,138],"graph-based":[42],"representations.":[43],"However,":[44],"maximizing":[45],"the":[46,143,148,153,170,212,253,260],"potential":[47],"of":[48,112,147,163,207,216],"such":[49,86],"in":[51,186,276],"practice":[52],"challenging,":[54],"as":[55,150,152],"companies":[56],"prioritize":[57],"data":[58],"privacy":[59],"security":[61,108,233],"over":[62],"collaboration":[63],"initiatives":[64],"improve":[66],"performance":[68,171,261],"robustness.":[70],"kMoL":[71,125,194,239],"an":[73,218,241],"open-source":[74,219,245],"machine":[75,183,220,273],"library":[77,222],"with":[78,174,223,264],"integrated":[79,224],"federated":[80,99,135,175,225,265],"capabilities":[82,234],"developed":[83],"address":[85],"challenges.":[87],"Its":[88],"key":[89],"features":[90,144],"include":[91],"state-of-the-art":[92],"architectures,":[94],"Bayesian":[95],"optimization,":[96],"explainability,":[97],"mechanisms.":[101],"It":[102],"demonstrates":[103],"extensive":[104],"customization":[105,231],"possibilities,":[106],"advanced":[107,230],"features,":[109],"straightforward":[110],"implementation":[111],"user-specific":[113],"models,":[114],"high":[116],"adaptability":[117],"custom":[119],"datasets":[120,140],"without":[121,235],"additional":[122,236],"programming":[123,237],"requirements.":[124],"evaluated":[127],"through":[128],"locally":[129],"trained":[130],"benchmark":[131],"settings":[132],"distributed":[134],"experiments":[137,165],"various":[139],"assess":[142],"flexibility":[146],"library,":[149],"well":[151],"facilitate":[156],"fast":[157],"practical":[159],"experimentation.":[160],"Additionally,":[161,252],"results":[162,255],"these":[164],"provide":[166,256],"further":[167,257],"insights":[168,258],"into":[169,259],"trade-offs":[172,262],"associated":[173,263],"strategies,":[177,267],"presenting":[178,268],"valuable":[179,269],"guidance":[180,270],"for":[181,247,271],"deploying":[182,272],"a":[187,277],"privacy-preserving":[188,278],"manner":[189,279],"within":[190,280],"pipelines.":[193,283],"available":[196],"on":[197],"GitHub":[198],"at":[199],"https://github.com/elix-tech/kmol":[200],".Scientific":[201],"contribution":[202,206],"The":[203],"primary":[204],"scientific":[205],"this":[208],"research":[209],"project":[210],"introduction":[213],"evaluation":[215],"kMoL,":[217],"capabilities.":[227],"By":[228],"demonstrating":[229],"requirements,":[238],"represents":[240],"accessible":[242],"yet":[243],"secure":[244],"platform":[246],"collaborative":[248],"projects.":[251],"experiment":[254]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
