{"id":"https://openalex.org/W4411371888","doi":"https://doi.org/10.1186/s13321-025-00958-w","title":"Crossover operators for molecular graphs with an application to virtual drug screening","display_name":"Crossover operators for molecular graphs with an application to virtual drug screening","publication_year":2025,"publication_date":"2025-06-17","ids":{"openalex":"https://openalex.org/W4411371888","doi":"https://doi.org/10.1186/s13321-025-00958-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/40528251"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-025-00958-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00958-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00958-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00958-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5096257242","display_name":"Nico Domschke","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nico Domschke","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany. dnico@bioinf.uni-leipzig.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany. dnico@bioinf.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bruno J. Schmidt","orcid":null},"institutions":[{"id":"https://openalex.org/I147765834","display_name":"Leipzig University of Applied Sciences","ror":"https://ror.org/03xgcq477","country_code":"DE","type":"education","lineage":["https://openalex.org/I147765834"]},{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bruno J. Schmidt","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany","Max Planck Institute for Mathematics in the Sciences, Inselstra\u00dfe 22, 04103, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661","https://openalex.org/I147765834"]},{"raw_affiliation_string":"Max Planck Institute for Mathematics in the Sciences, Inselstra\u00dfe 22, 04103, Leipzig, Germany","institution_ids":["https://openalex.org/I4210091327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019415803","display_name":"Thomas Gatter","orcid":"https://orcid.org/0000-0001-5567-3016"},"institutions":[{"id":"https://openalex.org/I147765834","display_name":"Leipzig University of Applied Sciences","ror":"https://ror.org/03xgcq477","country_code":"DE","type":"education","lineage":["https://openalex.org/I147765834"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Gatter","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661","https://openalex.org/I147765834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054630743","display_name":"Richard Golnik","orcid":"https://orcid.org/0000-0002-8582-5006"},"institutions":[{"id":"https://openalex.org/I147765834","display_name":"Leipzig University of Applied Sciences","ror":"https://ror.org/03xgcq477","country_code":"DE","type":"education","lineage":["https://openalex.org/I147765834"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Richard Golnik","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661","https://openalex.org/I147765834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095941677","display_name":"Paul Eisenhuth","orcid":"https://orcid.org/0009-0006-7379-5096"},"institutions":[{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Paul Eisenhuth","raw_affiliation_strings":["Center for Scalable Data Analytics and Artificial Intelligence ScaDS.AI and School of Embedded Composite Artificial Intelligence SECAI, Dresden/Leipzig, Germany","Institute for Drug Discovery, Leipzig University, Liebigstra\u00dfe 21, 04103, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence ScaDS.AI and School of Embedded Composite Artificial Intelligence SECAI, Dresden/Leipzig, Germany","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University, Liebigstra\u00dfe 21, 04103, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060720256","display_name":"Fabian Lie\u00dfmann","orcid":"https://orcid.org/0009-0007-9199-1629"},"institutions":[{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Fabian Liessmann","raw_affiliation_strings":["Center for Scalable Data Analytics and Artificial Intelligence ScaDS.AI and School of Embedded Composite Artificial Intelligence SECAI, Dresden/Leipzig, Germany","Institute for Drug Discovery, Leipzig University, Liebigstra\u00dfe 21, 04103, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence ScaDS.AI and School of Embedded Composite Artificial Intelligence SECAI, Dresden/Leipzig, Germany","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University, Liebigstra\u00dfe 21, 04103, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025842562","display_name":"Jens Meiler","orcid":"https://orcid.org/0000-0001-8945-193X"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["CA","DE","US"],"is_corresponding":false,"raw_author_name":"Jens Meiler","raw_affiliation_strings":["Center for Scalable Data Analytics and Artificial Intelligence ScaDS.AI and School of Embedded Composite Artificial Intelligence SECAI, Dresden/Leipzig, Germany","Department of Chemistry, Department of Pharmacology, Center for Structural Biology, Institute of Chemical Biology, Center for Applied Artificial Intelligence in Protein Dynamics, Vanderbilt University, 465 21st Ave S, Nashville, 37232, USA","Institute for Drug Discovery, Leipzig University, Liebigstra\u00dfe 21, 04103, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence ScaDS.AI and School of Embedded Composite Artificial Intelligence SECAI, Dresden/Leipzig, Germany","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Department of Chemistry, Department of Pharmacology, Center for Structural Biology, Institute of Chemical Biology, Center for Applied Artificial Intelligence in Protein Dynamics, Vanderbilt University, 465 21st Ave S, Nashville, 37232, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University, Liebigstra\u00dfe 21, 04103, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I147765834","display_name":"Leipzig University of Applied Sciences","ror":"https://ror.org/03xgcq477","country_code":"DE","type":"education","lineage":["https://openalex.org/I147765834"]},{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]},{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I4210119712","display_name":"Max Planck Institute for Mathematics","ror":"https://ror.org/02dh8ja68","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210119712"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["AT","CO","DE","US"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany. stadler@bioinf.uni-leipzig.de","Facultad de Ciencias, Universidad Nacional de Colombia, Ciudad Universitaria, Sede Bogot\u00e1, Bogot\u00e1, D.C., COL-111321, Colombia. stadler@bioinf.uni-leipzig.de","Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, Vienna, 1090, Austria. stadler@bioinf.uni-leipzig.de","Interdisciplinary Center for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany. stadler@bioinf.uni-leipzig.de","Max Planck Institute for Mathematics in the Sciences, Inselstra\u00dfe 22, 04103, Leipzig, Germany. stadler@bioinf.uni-leipzig.de","Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, 87501, USA. stadler@bioinf.uni-leipzig.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, Leipzig University, H\u00e4rtelstra\u00dfe 16-18 , 04107, Leipzig, Germany. stadler@bioinf.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661","https://openalex.org/I147765834"]},{"raw_affiliation_string":"Facultad de Ciencias, Universidad Nacional de Colombia, Ciudad Universitaria, Sede Bogot\u00e1, Bogot\u00e1, D.C., COL-111321, Colombia. stadler@bioinf.uni-leipzig.de","institution_ids":["https://openalex.org/I36243813"]},{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, Vienna, 1090, Austria. stadler@bioinf.uni-leipzig.de","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany. stadler@bioinf.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Max Planck Institute for Mathematics in the Sciences, Inselstra\u00dfe 22, 04103, Leipzig, Germany. stadler@bioinf.uni-leipzig.de","institution_ids":["https://openalex.org/I4210091327","https://openalex.org/I4210119712"]},{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, 87501, USA. stadler@bioinf.uni-leipzig.de","institution_ids":["https://openalex.org/I1308548392"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13855177,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"17","issue":"1","first_page":"97","last_page":"97"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crossover","display_name":"Crossover","score":0.909363865852356},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6464663147926331},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4776400625705719},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4447672963142395},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36028021574020386},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2045542597770691}],"concepts":[{"id":"https://openalex.org/C122507166","wikidata":"https://www.wikidata.org/wiki/Q628906","display_name":"Crossover","level":2,"score":0.909363865852356},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6464663147926331},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4776400625705719},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4447672963142395},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36028021574020386},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2045542597770691},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-025-00958-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00958-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00958-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:40528251","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40528251","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6d792e943162450b9f7db7010ce7e708","is_oa":true,"landing_page_url":"https://doaj.org/article/6d792e943162450b9f7db7010ce7e708","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-26 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12175394","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12175394","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-025-00958-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-025-00958-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00958-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1479485356","display_name":null,"funder_award_id":"209933838","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G2222438795","display_name":null,"funder_award_id":"0066551","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G6098565189","display_name":null,"funder_award_id":"57616814","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8756277515","display_name":null,"funder_award_id":"460865652","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320315721","display_name":"Max Kade Foundation","ror":"https://ror.org/02tn5vs15"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320325298","display_name":"Universit\u00e4t Leipzig","ror":"https://ror.org/03s7gtk40"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"},{"id":"https://openalex.org/F4320330124","display_name":"German Network for Bioinformatics Infrastructure","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411371888.pdf","grobid_xml":"https://content.openalex.org/works/W4411371888.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W1009610150","https://openalex.org/W1497248035","https://openalex.org/W1507397620","https://openalex.org/W1508604947","https://openalex.org/W1586773736","https://openalex.org/W1965690159","https://openalex.org/W1975292844","https://openalex.org/W1982979061","https://openalex.org/W1987041862","https://openalex.org/W1991286793","https://openalex.org/W1992632827","https://openalex.org/W1998136395","https://openalex.org/W1999738209","https://openalex.org/W2009315806","https://openalex.org/W2010861052","https://openalex.org/W2011756264","https://openalex.org/W2014123957","https://openalex.org/W2019926612","https://openalex.org/W2020816761","https://openalex.org/W2022252334","https://openalex.org/W2022476850","https://openalex.org/W2022885801","https://openalex.org/W2023182702","https://openalex.org/W2027478081","https://openalex.org/W2035438444","https://openalex.org/W2039350725","https://openalex.org/W2043509228","https://openalex.org/W2043973254","https://openalex.org/W2044136633","https://openalex.org/W2050226017","https://openalex.org/W2050285203","https://openalex.org/W2060531713","https://openalex.org/W2072573705","https://openalex.org/W2089222503","https://openalex.org/W2107160601","https://openalex.org/W2114704115","https://openalex.org/W2126823383","https://openalex.org/W2130222298","https://openalex.org/W2135732933","https://openalex.org/W2139085131","https://openalex.org/W2153606085","https://openalex.org/W2160592148","https://openalex.org/W2167046094","https://openalex.org/W2244785476","https://openalex.org/W2330675604","https://openalex.org/W2601203550","https://openalex.org/W2726184500","https://openalex.org/W2736776555","https://openalex.org/W2783658781","https://openalex.org/W2887447356","https://openalex.org/W2914542247","https://openalex.org/W2937816774","https://openalex.org/W2965068418","https://openalex.org/W3014154196","https://openalex.org/W3022690009","https://openalex.org/W3024423177","https://openalex.org/W3092705559","https://openalex.org/W3094704314","https://openalex.org/W3106761016","https://openalex.org/W3116865743","https://openalex.org/W3158331815","https://openalex.org/W3211768090","https://openalex.org/W4206525059","https://openalex.org/W4211217667","https://openalex.org/W4234163381","https://openalex.org/W4245443308","https://openalex.org/W4246168648","https://openalex.org/W4255280903","https://openalex.org/W4298118927","https://openalex.org/W4309884249","https://openalex.org/W4317695442","https://openalex.org/W4386165041","https://openalex.org/W4390872067","https://openalex.org/W4391246842","https://openalex.org/W4392857174","https://openalex.org/W4396243779","https://openalex.org/W4401873335","https://openalex.org/W6910454713"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2347477706","https://openalex.org/W1943663474","https://openalex.org/W4299389082","https://openalex.org/W2306830238","https://openalex.org/W2110294633","https://openalex.org/W1829715381","https://openalex.org/W2962747841"],"abstract_inverted_index":{"Genetic":[0],"algorithms":[1],"are":[2,55,137,168],"a":[3,31,40,81,193,239,249],"powerful":[4,114],"method":[5],"to":[6,84,105,116,155,207,255],"solve":[7],"optimization":[8,201],"problems":[9],"with":[10,141,170,217],"complex":[11],"cost":[12],"functions":[13],"over":[14,49],"vast":[15],"search":[16],"spaces":[17,50],"that":[18,131,173,259],"rely":[19],"in":[20,34,80,122,191,230,263],"particular":[21],"on":[22,57,107,111,238],"recombining":[23],"parts":[24],"of":[25,43,51,69,74,125,134,166,241,257],"previous":[26],"solutions.":[27],"Crossover":[28],"operators":[29,45,54,237],"play":[30],"crucial":[32],"role":[33],"this":[35],"context.":[36],"Here,":[37],"we":[38,186,212],"describe":[39],"large":[41],"class":[42],"these":[44],"designed":[46],"for":[47,180,196,204],"searching":[48,203],"graphs.":[52,246],"These":[53],"based":[56],"introducing":[58],"small":[59],"cuts":[60],"into":[61],"graphs":[62,112,136],"and":[63,252],"rejoining":[64],"the":[65,123,132,146,152,188,221],"resulting":[66],"induced":[67],"subgraphs":[68],"two":[70],"parents.":[71],"This":[72,247],"form":[73],"cut-and-join":[75,109,189,235],"crossover":[76,106,110,149,190,236],"can":[77,176],"be":[78,177],"restricted":[79],"consistent":[82],"way":[83],"preserve":[85],"local":[86],"properties":[87,98,161],"such":[88,99,162,181],"as":[89,94,96,100,163,225,227],"vertex-degrees":[90],"(valency),":[91],"or":[92],"bond-orders,":[93],"well":[95,226,262],"global":[97],"graph-theoretic":[101],"planarity.":[102],"In":[103,200],"contrast":[104],"strings,":[108],"is":[113],"enough":[115],"ergodically":[117],"explore":[118],"chemical":[119],"space":[120],"even":[121],"absence":[124],"mutation":[126],"operators.":[127],"Extensive":[128],"benchmarking":[129],"shows":[130],"offspring":[133],"molecular":[135,245],"again":[138],"plausible":[139],"molecules":[140,216,258],"high":[142],"probability,":[143],"while":[144],"at":[145],"same":[147],"time":[148],"drastically":[150],"increases":[151],"diversity":[153],"compared":[154],"initial":[156],"molecule":[157],"libraries.":[158],"Moreover,":[159],"desirable":[160],"favorable":[164],"indices":[165],"synthesizability":[167],"preserved":[169],"sufficient":[171],"frequency":[172],"candidate":[174,215],"offsprings":[175],"filtered":[178],"efficiently":[179],"properties.":[182],"As":[183],"an":[184],"application":[185],"utilized":[187],"REvoLd,":[192],"GA-based":[194],"system":[195],"computer-aided":[197],"drug":[198],"design.":[199],"runs":[202],"ligands":[205],"binding":[206,218],"four":[208],"different":[209],"target":[210],"proteins":[211],"consistently":[213],"found":[214,229],"constants":[219],"exceeding":[220],"best":[222],"known":[223],"binders":[224],"candidates":[228],"make-on-demand":[231],"libraries.Scientific":[232],"contributionWe":[233],"define":[234],"variety":[240],"graph":[242],"classes":[243],"including":[244],"constitutes":[248],"mathematically":[250],"simple":[251],"well-characterized":[253],"approach":[254],"recombination":[256],"performed":[260],"very":[261],"real-life":[264],"CADD":[265],"tasks.":[266]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
