{"id":"https://openalex.org/W4404347348","doi":"https://doi.org/10.1186/s13321-024-00908-y","title":"QSPRpred: a Flexible Open-Source Quantitative Structure-Property Relationship Modelling Tool","display_name":"QSPRpred: a Flexible Open-Source Quantitative Structure-Property Relationship Modelling Tool","publication_year":2024,"publication_date":"2024-11-14","ids":{"openalex":"https://openalex.org/W4404347348","doi":"https://doi.org/10.1186/s13321-024-00908-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/39543652"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-024-00908-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00908-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00908-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00908-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052982318","display_name":"Helle W. van den Maagdenberg","orcid":"https://orcid.org/0000-0002-9718-7806"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Helle W. van den Maagdenberg","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-9718-7806","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063973687","display_name":"Martin \u0160\u00edcho","orcid":"https://orcid.org/0000-0002-8771-1731"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]},{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ","NL"],"is_corresponding":false,"raw_author_name":"Martin \u0160\u00edcho","raw_affiliation_strings":["CZ-OPENSCREEN: National Infrastructure for Chemical Biology, Department of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, A-4040, Czech Republic","Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-8771-1731","affiliations":[{"raw_affiliation_string":"CZ-OPENSCREEN: National Infrastructure for Chemical Biology, Department of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, A-4040, Czech Republic","institution_ids":["https://openalex.org/I9073902"]},{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090495544","display_name":"David Alencar Araripe","orcid":"https://orcid.org/0000-0002-5104-1959"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"David Alencar Araripe","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","Department of Human Genetics, Leiden University Medical Center, Einthovenweg 20, Leiden, 2333ZC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-5104-1959","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]},{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Einthovenweg 20, Leiden, 2333ZC, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008972636","display_name":"Sohvi Luukkonen","orcid":"https://orcid.org/0000-0001-9387-1427"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I121883995","display_name":"Johannes Kepler University of Linz","ror":"https://ror.org/052r2xn60","country_code":"AT","type":"education","lineage":["https://openalex.org/I121883995"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["AT","NL"],"is_corresponding":false,"raw_author_name":"Sohvi Luukkonen","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University, Altenberger Stra\u00dfe 69, Linz, 610101, Austria"],"raw_orcid":"https://orcid.org/0000-0001-9387-1427","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]},{"raw_affiliation_string":"ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University, Altenberger Stra\u00dfe 69, Linz, 610101, Austria","institution_ids":["https://openalex.org/I121883995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001242977","display_name":"Linde Schoenmaker","orcid":"https://orcid.org/0000-0001-9879-1004"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Linde Schoenmaker","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-9879-1004","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075468487","display_name":"Michiel Jespers","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Michiel Jespers","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands"],"raw_orcid":"https://orcid.org/0009-0003-2083-0159","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030705778","display_name":"Olivier J. M. B\u00e9quignon","orcid":"https://orcid.org/0000-0002-7554-9220"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210108594","display_name":"Amsterdam Neuroscience","ror":"https://ror.org/01x2d9f70","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210108594"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Olivier J. M. B\u00e9quignon","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","Department of Neurosurgery, Brain Tumor Center Amsterdam, Amsterdam University Medical Center, Cancer Center Amsterdam, De Boelelaan 1117, Amsterdam, 1081 HV, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-7554-9220","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]},{"raw_affiliation_string":"Department of Neurosurgery, Brain Tumor Center Amsterdam, Amsterdam University Medical Center, Cancer Center Amsterdam, De Boelelaan 1117, Amsterdam, 1081 HV, The Netherlands","institution_ids":["https://openalex.org/I4210108594","https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034098867","display_name":"Marina Gorostiola Gonz\u00e1lez","orcid":"https://orcid.org/0000-0003-1568-0881"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210111138","display_name":"Oncode Institute","ror":"https://ror.org/01n92vv28","country_code":"NL","type":"education","lineage":["https://openalex.org/I4210111138"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marina Gorostiola Gonz\u00e1lez","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","Oncode Institute, Utrecht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-1568-0881","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]},{"raw_affiliation_string":"Oncode Institute, Utrecht, The Netherlands","institution_ids":["https://openalex.org/I4210111138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092002568","display_name":"Remco L. van den Broek","orcid":"https://orcid.org/0009-0008-5661-1157"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Remco L. van den Broek","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands"],"raw_orcid":"https://orcid.org/0009-0008-5661-1157","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089616110","display_name":"Andrius Bernatavicius","orcid":"https://orcid.org/0000-0002-0058-3678"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Andrius Bernatavicius","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, Leiden, 2333 CA, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-0058-3678","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]},{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, Leiden, 2333 CA, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049073682","display_name":"J. G. Coen van Hasselt","orcid":"https://orcid.org/0000-0002-1664-7314"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"J. G. Coen van Hasselt","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-1664-7314","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077172862","display_name":"Piet H. van der Graaf","orcid":"https://orcid.org/0000-0003-1314-3484"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"Piet. H. van der Graaf","raw_affiliation_strings":["Certara UK, University Road, Canterbury Innovation Centre, Unit 43, Canterbury, Kent, CT2 7FG, UK","Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-1314-3484","affiliations":[{"raw_affiliation_string":"Certara UK, University Road, Canterbury Innovation Centre, Unit 43, Canterbury, Kent, CT2 7FG, UK","institution_ids":["https://openalex.org/I20581793"]},{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088996741","display_name":"Gerard J. P. van Westen","orcid":"https://orcid.org/0000-0003-0717-1817"},"institutions":[{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Gerard J. P. van Westen","raw_affiliation_strings":["Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands. gerard@lacdr.leidenuniv.nl"],"raw_orcid":"https://orcid.org/0000-0003-0717-1817","affiliations":[{"raw_affiliation_string":"Computational Drug Discovery, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, Leiden, 2333 CC, The Netherlands. gerard@lacdr.leidenuniv.nl","institution_ids":["https://openalex.org/I4210133171"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":13,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":5.448,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.96458379,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"16","issue":"1","first_page":"128","last_page":"128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8656418919563293},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.716150164604187},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6719269156455994},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6524848937988281},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6208128929138184},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.5300036668777466},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5198608040809631},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.4762994349002838},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.473371684551239},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.45779284834861755},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4566780924797058},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.4419613480567932},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4404180347919464},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4374108910560608},{"id":"https://openalex.org/keywords/transferability","display_name":"Transferability","score":0.418365478515625},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4008173942565918},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.25125008821487427},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2431703507900238},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21508803963661194},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1710403561592102},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.10577422380447388},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10224774479866028}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8656418919563293},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.716150164604187},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6719269156455994},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6524848937988281},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6208128929138184},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.5300036668777466},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5198608040809631},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.4762994349002838},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.473371684551239},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.45779284834861755},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4566780924797058},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.4419613480567932},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4404180347919464},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4374108910560608},{"id":"https://openalex.org/C61272859","wikidata":"https://www.wikidata.org/wiki/Q7834031","display_name":"Transferability","level":3,"score":0.418365478515625},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4008173942565918},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.25125008821487427},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2431703507900238},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21508803963661194},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1710403561592102},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.10577422380447388},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10224774479866028},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C140331021","wikidata":"https://www.wikidata.org/wiki/Q1868104","display_name":"Logit","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13321-024-00908-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00908-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00908-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:39543652","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39543652","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11566221","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11566221","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11566221/pdf/13321_2024_Article_908.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:9debc1b05a614b88bc3be65b20d3adda","is_oa":false,"landing_page_url":"https://doaj.org/article/9debc1b05a614b88bc3be65b20d3adda","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 16, Iss 1, Pp 1-16 (2024)","raw_type":"article"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_4175348","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/4175348","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics","raw_type":"Text"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_4297140","is_oa":true,"landing_page_url":"https://hdl.handle.net/1887/4297140","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-024-00908-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00908-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00908-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2263095806","display_name":null,"funder_award_id":"955879","funder_id":"https://openalex.org/F4320338438","funder_display_name":"HORIZON EUROPE Marie Sklodowska-Curie Actions"},{"id":"https://openalex.org/G422145971","display_name":null,"funder_award_id":"ENPPS.LIFT.019.010","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320338438","display_name":"HORIZON EUROPE Marie Sklodowska-Curie Actions","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404347348.pdf","grobid_xml":"https://content.openalex.org/works/W4404347348.grobid-xml"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W1835740130","https://openalex.org/W1898375943","https://openalex.org/W1971769921","https://openalex.org/W1994249991","https://openalex.org/W2023306209","https://openalex.org/W2033757486","https://openalex.org/W2052226480","https://openalex.org/W2086565769","https://openalex.org/W2123676318","https://openalex.org/W2127322768","https://openalex.org/W2129434099","https://openalex.org/W2159887157","https://openalex.org/W2160378127","https://openalex.org/W2187707217","https://openalex.org/W2200017991","https://openalex.org/W2295598076","https://openalex.org/W2302501749","https://openalex.org/W2342249984","https://openalex.org/W2398789413","https://openalex.org/W2594183968","https://openalex.org/W2740946158","https://openalex.org/W2787225861","https://openalex.org/W2788724800","https://openalex.org/W2791355014","https://openalex.org/W2803318906","https://openalex.org/W2900090807","https://openalex.org/W2903198840","https://openalex.org/W2944196828","https://openalex.org/W2949676527","https://openalex.org/W2966357564","https://openalex.org/W2980515854","https://openalex.org/W3013702826","https://openalex.org/W3013954280","https://openalex.org/W3014476516","https://openalex.org/W3018689051","https://openalex.org/W3023042104","https://openalex.org/W3039548502","https://openalex.org/W3045876280","https://openalex.org/W3085046840","https://openalex.org/W3087418839","https://openalex.org/W3096745495","https://openalex.org/W3131057326","https://openalex.org/W3143491409","https://openalex.org/W3149490662","https://openalex.org/W3202251206","https://openalex.org/W3202726775","https://openalex.org/W4200306039","https://openalex.org/W4220992614","https://openalex.org/W4226471803","https://openalex.org/W4286231567","https://openalex.org/W4307225838","https://openalex.org/W4307468223","https://openalex.org/W4309955312","https://openalex.org/W4310603653","https://openalex.org/W4311826389","https://openalex.org/W4313597804","https://openalex.org/W4319321503","https://openalex.org/W4372283338","https://openalex.org/W4379376560","https://openalex.org/W4380083000","https://openalex.org/W4382777249","https://openalex.org/W4385210687","https://openalex.org/W4385402127","https://openalex.org/W4386221938","https://openalex.org/W4386223267","https://openalex.org/W4386453564","https://openalex.org/W4386766213","https://openalex.org/W4387617009","https://openalex.org/W4387780741","https://openalex.org/W4389395703","https://openalex.org/W4389396422","https://openalex.org/W4389479893","https://openalex.org/W4390221451","https://openalex.org/W4391308260","https://openalex.org/W4391431291","https://openalex.org/W4392093325","https://openalex.org/W4394812769","https://openalex.org/W4400222530","https://openalex.org/W4401710746","https://openalex.org/W6601102799"],"related_works":["https://openalex.org/W207660752","https://openalex.org/W3121352828","https://openalex.org/W4386041260","https://openalex.org/W4298269242","https://openalex.org/W4298401663","https://openalex.org/W4401741136","https://openalex.org/W2557718140","https://openalex.org/W4386470600","https://openalex.org/W4399490472","https://openalex.org/W4300787769"],"abstract_inverted_index":{"Building":[0],"reliable":[1],"and":[2,22,33,37,57,77,120,132,173,181,202,229,255,260,272,278,300,309],"robust":[3],"quantitative":[4],"structure-property":[5],"relationship":[6],"(QSPR)":[7],"models":[8,56,121,140],"is":[9,30,49,164,178,226,295],"a":[10,69,99,103,114,184,205,220,238,270],"challenging":[11],"task.":[12],"First,":[13],"the":[14,25,43,52,84,139],"experimental":[15],"data":[16,75,118,146,253],"needs":[17],"to":[18,50,82,93,149,189,210,218,236,244,257,265],"be":[19,40,129,216],"obtained,":[20],"analyzed":[21],"curated.":[23],"Second,":[24],"number":[26],"of":[27,54,73,98,105,162,169,187,199,223,276,293,311],"available":[28,230],"methods":[29],"continuously":[31],"growing":[32],"evaluating":[34],"different":[35,96,213],"algorithms":[36],"methodologies":[38],"can":[39,128,215],"arduous.":[41],"Finally,":[42],"last":[44],"hurdle":[45],"that":[46,284],"researchers":[47],"face":[48],"ensure":[51],"reproducibility":[53,308],"their":[55,59],"facilitate":[58],"transferability":[60,310],"into":[61,134],"practice.":[62],"In":[63,193,263],"this":[64,194],"work,":[65],"we":[66,196],"introduce":[67],"QSPRpred,":[68],"toolkit":[70],"for":[71,171],"analysis":[72,256],"bioactivity":[74],"sets":[76,119],"QSPR":[78,250,288],"modelling,":[79],"which":[80,125,305],"attempts":[81],"address":[83],"aforementioned":[85],"challenges.":[86],"QSPRpred's":[87,200],"modular":[88],"Python":[89,242],"API":[90,243],"enables":[91],"users":[92],"intuitively":[94],"describe":[95,197],"parts":[97],"modelling":[100,251],"workflow":[101],"using":[102],"plethora":[104],"pre-implemented":[106],"components,":[107],"but":[108,240],"also":[109,165,203,285,296],"integrates":[110],"customized":[111],"implementations":[112],"in":[113,249,297],"\"plug-and-play\"":[115],"manner.":[116],"QSPRpred":[117,163,225,268,294],"are":[122,141],"directly":[123,155],"serializable,":[124],"means":[126],"they":[127],"readily":[130],"reproduced":[131],"put":[133],"operation":[135],"after":[136],"training":[137],"as":[138],"saved":[142],"with":[143,183,280],"all":[144,198,246],"required":[145],"pre-processing":[147],"steps":[148],"make":[150],"predictions":[151],"on":[152],"new":[153,191],"compounds":[154],"from":[156,252],"SMILES":[157],"strings.":[158],"The":[159,176],"general-purpose":[160],"character":[161],"demonstrated":[166],"by":[167],"inclusion":[168],"support":[170],"multi-task":[172],"proteochemometric":[174],"modelling.":[175,289],"package":[177],"extensively":[179],"documented":[180],"comes":[182],"large":[185],"collection":[186],"tutorials":[188],"help":[190],"users.":[192],"paper,":[195],"functionalities":[201],"conduct":[204,245],"small":[206],"benchmarking":[207],"case":[208],"study":[209],"illustrate":[211],"how":[212],"components":[214],"leveraged":[217],"compare":[219],"diverse":[221],"set":[222],"models.":[224,312],"fully":[227],"open-source":[228],"at":[231],"https://github.com/CDDLeiden/QSPRpred":[232],".Scientific":[233],"ContributionQSPRpred":[234],"aims":[235],"provide":[237],"complex,":[239],"comprehensive":[241],"tasks":[247],"encountered":[248],"preparation":[254],"model":[258,261],"creation":[259],"deployment.":[262],"contrast":[264],"similar":[266],"packages,":[267],"offers":[269],"wider":[271],"more":[273],"exhaustive":[274],"range":[275],"capabilities":[277],"integrations":[279],"many":[281],"popular":[282],"packages":[283],"go":[286],"beyond":[287],"A":[290],"significant":[291],"contribution":[292],"its":[298],"automated":[299],"highly":[301],"standardized":[302],"serialization":[303],"scheme,":[304],"significantly":[306],"improves":[307]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":10}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
