{"id":"https://openalex.org/W4400176958","doi":"https://doi.org/10.1186/s13321-024-00870-9","title":"CPSign: conformal prediction for cheminformatics modeling","display_name":"CPSign: conformal prediction for cheminformatics modeling","publication_year":2024,"publication_date":"2024-06-28","ids":{"openalex":"https://openalex.org/W4400176958","doi":"https://doi.org/10.1186/s13321-024-00870-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/38943219"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-024-00870-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00870-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00870-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00870-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081393883","display_name":"Staffan Arvidsson","orcid":"https://orcid.org/0000-0001-6709-7116"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Staffan Arvidsson McShane","raw_affiliation_strings":["Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067014994","display_name":"Ulf Norinder","orcid":"https://orcid.org/0000-0003-3107-331X"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I26437253","display_name":"\u00d6rebro University","ror":"https://ror.org/05kytsw45","country_code":"SE","type":"education","lineage":["https://openalex.org/I26437253"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ulf Norinder","raw_affiliation_strings":["Department of Computer and Systems Sciences, Stockholm University, Stockholm, 10587, Sweden","Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden","MTM Research Centre, School of Science and Technology, \u00d6rebro University, \u00d6rebro, 70182, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Systems Sciences, Stockholm University, Stockholm, 10587, Sweden","institution_ids":["https://openalex.org/I161593684"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]},{"raw_affiliation_string":"MTM Research Centre, School of Science and Technology, \u00d6rebro University, \u00d6rebro, 70182, Sweden","institution_ids":["https://openalex.org/I26437253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027509528","display_name":"Jonathan Alvarsson","orcid":"https://orcid.org/0000-0002-8682-7206"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jonathan Alvarsson","raw_affiliation_strings":["Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046035604","display_name":"Ernst Ahlberg","orcid":"https://orcid.org/0000-0003-2050-9069"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["GB","SE"],"is_corresponding":false,"raw_author_name":"Ernst Ahlberg","raw_affiliation_strings":["Department of Computer Science, Royal Holloway University of London, Egham, TW20 0EX, UK","Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Royal Holloway University of London, Egham, TW20 0EX, UK","institution_ids":["https://openalex.org/I184558857"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072219201","display_name":"Lars Carlsson","orcid":"https://orcid.org/0000-0001-9491-4134"},"institutions":[{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]},{"id":"https://openalex.org/I94616838","display_name":"J\u00f6nk\u00f6ping University","ror":"https://ror.org/03t54am93","country_code":"SE","type":"education","lineage":["https://openalex.org/I94616838"]}],"countries":["GB","SE"],"is_corresponding":false,"raw_author_name":"Lars Carlsson","raw_affiliation_strings":["Department of Computer Science, Royal Holloway University of London, Egham, TW20 0EX, UK","Department of Computing, J\u00f6nk\u00f6ping University, J\u00f6nk\u00f6ping, 55111, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Royal Holloway University of London, Egham, TW20 0EX, UK","institution_ids":["https://openalex.org/I184558857"]},{"raw_affiliation_string":"Department of Computing, J\u00f6nk\u00f6ping University, J\u00f6nk\u00f6ping, 55111, Sweden","institution_ids":["https://openalex.org/I94616838"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046663348","display_name":"Ola Spjuth","orcid":"https://orcid.org/0000-0002-8083-2864"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ola Spjuth","raw_affiliation_strings":["Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden. ola.spjuth@uu.se","Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden. ola.spjuth@uu.se","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, 75124, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":5.7684,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.96655309,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"16","issue":"1","first_page":"75","last_page":"75"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9728000164031982,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.8740800619125366},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8271435499191284},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7081640958786011},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5855472087860107},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5762240886688232},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5737868547439575},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5152630805969238},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.48919108510017395},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12098011374473572}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.8740800619125366},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8271435499191284},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7081640958786011},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5855472087860107},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5762240886688232},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5737868547439575},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5152630805969238},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.48919108510017395},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12098011374473572},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-024-00870-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00870-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00870-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:38943219","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38943219","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:DiVA.org:uu-508927","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-508927","pdf_url":"https://uu.diva-portal.org/smash/get/diva2:1787147/FULLTEXT01","source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"},{"id":"pmh:oai:pubmedcentral.nih.gov:11214261","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11214261","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11214261/pdf/13321_2024_Article_870.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:5bc293f6d66346fca78338f8c969d309","is_oa":true,"landing_page_url":"https://doaj.org/article/5bc293f6d66346fca78338f8c969d309","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 16, Iss 1, Pp 1-17 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-024-00870-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00870-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00870-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4699999988079071,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G383028037","display_name":null,"funder_award_id":"2020-03731","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G463847038","display_name":null,"funder_award_id":"22 2412","funder_id":"https://openalex.org/F4320321491","funder_display_name":"Cancerfonden"},{"id":"https://openalex.org/G6160978325","display_name":null,"funder_award_id":"2020-01865","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G643302094","display_name":null,"funder_award_id":"101057014","funder_id":"https://openalex.org/F4320334322","funder_display_name":"HORIZON EUROPE Framework Programme"},{"id":"https://openalex.org/G855192738","display_name":null,"funder_award_id":"2022-00940","funder_id":"https://openalex.org/F4320321033","funder_display_name":"Svenska Forskningsr\u00e5det Formas"}],"funders":[{"id":"https://openalex.org/F4320313607","display_name":"Swedish Cancer Foundation","ror":null},{"id":"https://openalex.org/F4320321033","display_name":"Svenska Forskningsr\u00e5det Formas","ror":"https://ror.org/03pjs1y45"},{"id":"https://openalex.org/F4320321491","display_name":"Cancerfonden","ror":"https://ror.org/0527jb766"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"},{"id":"https://openalex.org/F4320324119","display_name":"Uppsala Universitet","ror":"https://ror.org/048a87296"},{"id":"https://openalex.org/F4320334322","display_name":"HORIZON EUROPE Framework Programme","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400176958.pdf","grobid_xml":"https://content.openalex.org/works/W4400176958.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W646225513","https://openalex.org/W1545231783","https://openalex.org/W1553101044","https://openalex.org/W1988037271","https://openalex.org/W1994249991","https://openalex.org/W2009842403","https://openalex.org/W2011006316","https://openalex.org/W2011301426","https://openalex.org/W2044834685","https://openalex.org/W2060062036","https://openalex.org/W2098889731","https://openalex.org/W2143586989","https://openalex.org/W2153635508","https://openalex.org/W2213735563","https://openalex.org/W2218645992","https://openalex.org/W2263435653","https://openalex.org/W2269544137","https://openalex.org/W2298114155","https://openalex.org/W2338221130","https://openalex.org/W2493157521","https://openalex.org/W2541855169","https://openalex.org/W2568027568","https://openalex.org/W2587942483","https://openalex.org/W2594183968","https://openalex.org/W2766761250","https://openalex.org/W2791769165","https://openalex.org/W2798936682","https://openalex.org/W2802404464","https://openalex.org/W2890097032","https://openalex.org/W2891992558","https://openalex.org/W2907657781","https://openalex.org/W2909055772","https://openalex.org/W2912842679","https://openalex.org/W2937307539","https://openalex.org/W2942181592","https://openalex.org/W2950238754","https://openalex.org/W2952854804","https://openalex.org/W2966109107","https://openalex.org/W2966357564","https://openalex.org/W3013169228","https://openalex.org/W3023042104","https://openalex.org/W3029442503","https://openalex.org/W3035965352","https://openalex.org/W3093152954","https://openalex.org/W3099878876","https://openalex.org/W3113291402","https://openalex.org/W3133308163","https://openalex.org/W3143491409","https://openalex.org/W3165081806","https://openalex.org/W3165163721","https://openalex.org/W3177111123","https://openalex.org/W4214855489","https://openalex.org/W4311506764","https://openalex.org/W4312211639","https://openalex.org/W4313260052","https://openalex.org/W4313597804","https://openalex.org/W4390221451","https://openalex.org/W4405318654","https://openalex.org/W6739651123","https://openalex.org/W6931713756"],"related_works":["https://openalex.org/W1573015311","https://openalex.org/W2889938001","https://openalex.org/W4386509167","https://openalex.org/W3165034028","https://openalex.org/W1570419641","https://openalex.org/W4293771607","https://openalex.org/W2296499206","https://openalex.org/W132037564","https://openalex.org/W3210319767","https://openalex.org/W4246770172"],"abstract_inverted_index":{"Conformal":[0],"prediction":[1,21,38,48,55,199],"has":[2,167],"seen":[3],"many":[4],"applications":[5],"in":[6,170,175,177,196],"pharmaceutical":[7],"science,":[8],"being":[9],"able":[10],"to":[11,115,161,182,248],"calibrate":[12],"outputs":[13],"of":[14,36,69],"machine":[15],"learning":[16,301],"models":[17,105,118,269],"and":[18,45,51,53,108,134,156,173,192,210,218,225,253,262,266,281],"producing":[19],"valid":[20],"intervals.":[22],"We":[23,96,122],"here":[24],"present":[25],"the":[26,57,197],"open":[27],"source":[28],"software":[29,204,244],"CPSign":[30,42,124,144,166,215,230,240,293],"that":[31,143,245],"is":[32,64,78,174],"a":[33,135,202,207,216,242,274,285,298],"complete":[34],"implementation":[35],"conformal":[37,47,104,198,261],"for":[39,49,100,222],"cheminformatics":[40,128],"modeling.":[41],"implements":[43],"inductive":[44],"transductive":[46],"classification":[50],"regression,":[52],"probabilistic":[54,263],"with":[56,149,153,185,194,201,284,297],"Venn-ABERS":[58],"methodology.":[59],"The":[60,74,140,180],"main":[61,75],"chemical":[62,186,228,258],"representation":[63],"signatures":[65],"but":[66,83],"other":[67,126],"types":[68],"descriptors":[70],"are":[71,87],"also":[72,97],"supported.":[73],"modeling":[76,85,129,193,252,290],"methodology":[77],"support":[79],"vector":[80],"machines":[81],"(SVMs),":[82],"additional":[84],"methods":[86],"supported":[88],"via":[89],"an":[90],"extension":[91],"mechanism,":[92],"e.g.":[93],"DeepLearning4J":[94],"models.":[95,165],"describe":[98],"features":[99,114],"visualizing":[101],"results":[102,141],"from":[103,234],"including":[106,131],"calibration":[107],"efficiency":[109],"plots,":[110],"as":[111,113,119],"well":[112],"publish":[116],"predictive":[117,147,151,282],"REST":[120],"services.":[121],"compare":[123],"against":[125,288],"common":[127],"approaches":[130],"random":[132],"forest,":[133],"directed":[136],"message-passing":[137],"neural":[138,162],"network.":[139],"show":[142],"produces":[145],"robust":[146],"performance":[148],"comparative":[150],"efficiency,":[152],"superior":[154],"runtime":[155],"lower":[157],"hardware":[158],"requirements":[159],"compared":[160],"network":[163],"based":[164,302],"been":[168],"used":[169],"several":[171],"studies":[172],"production-use":[176],"multiple":[178],"organizations.":[179],"ability":[181],"work":[183],"directly":[184,256],"input":[187],"files,":[188],"perform":[189,249],"descriptor":[190],"calculation":[191],"SVM":[195],"framework,":[200],"single":[203,243],"package":[205,221],"having":[206],"low":[208],"footprint":[209],"fast":[211],"execution":[212],"time":[213],"makes":[214],"convenient":[217],"yet":[219],"flexible":[220],"training,":[223],"deploying,":[224],"predicting":[226],"on":[227,257,295],"data.":[229],"can":[231,270],"be":[232,271],"downloaded":[233],"GitHub":[235],"at":[236,273],"https://github.com/arosbio/cpsign":[237],".Scientific":[238],"contribution":[239],"provides":[241],"allows":[246],"users":[247],"data":[250],"preprocessing,":[251],"make":[254],"predictions":[255],"structures,":[259],"using":[260],"prediction.":[264],"Building":[265],"evaluating":[267],"new":[268],"achieved":[272],"high":[275],"abstraction":[276],"level,":[277],"without":[278],"sacrificing":[279],"flexibility":[280],"performance-showcased":[283],"method":[286],"evaluation":[287],"contemporary":[289],"approaches,":[291],"where":[292],"performs":[294],"par":[296],"state-of-the-art":[299],"deep":[300],"model.":[303]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2024-07-01T00:00:00"}
