{"id":"https://openalex.org/W4396216328","doi":"https://doi.org/10.1186/s13321-024-00843-y","title":"QuanDB: a quantum chemical property database towards enhancing 3D molecular representation learning","display_name":"QuanDB: a quantum chemical property database towards enhancing 3D molecular representation learning","publication_year":2024,"publication_date":"2024-04-29","ids":{"openalex":"https://openalex.org/W4396216328","doi":"https://doi.org/10.1186/s13321-024-00843-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/38685101"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-024-00843-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00843-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00843-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00843-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112896065","display_name":"Zhijiang Yang","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Zhijiang Yang","raw_affiliation_strings":["State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100595861","display_name":"Tengxin Huang","orcid":"https://orcid.org/0009-0009-8202-9213"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tengxin Huang","raw_affiliation_strings":["State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100620216","display_name":"Li Pan","orcid":"https://orcid.org/0000-0002-0424-9845"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li Pan","raw_affiliation_strings":["State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075181691","display_name":"Jingjing Wang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jingjing Wang","raw_affiliation_strings":["State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100462051","display_name":"Liangliang Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210163488","display_name":"Pingliang People's Hospital","ror":"https://ror.org/03j4gka24","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210163488"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangliang Wang","raw_affiliation_strings":["State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China. wangliangliang@pku.org.cn","State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China. wangliangliang@pku.org.cn","institution_ids":["https://openalex.org/I4210163488"]},{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101680718","display_name":"Junjie Ding","orcid":"https://orcid.org/0000-0002-6429-3178"},"institutions":[{"id":"https://openalex.org/I4210127390","display_name":"State Council of the People's Republic of China","ror":"https://ror.org/02fzqav45","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junjie Ding","raw_affiliation_strings":["State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China. djj224@163.com","State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China. djj224@163.com","institution_ids":["https://openalex.org/I4210127390"]},{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027702510","display_name":"Junhua Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junhua Xiao","raw_affiliation_strings":["State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China. xiao.junhua@pku.edu.cn","State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China. xiao.junhua@pku.edu.cn","institution_ids":["https://openalex.org/I52158045"]},{"raw_affiliation_string":"State Key Laboratory of NBC Protection for Civilian, Beijing, People's Republic of China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5112896065"],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":3.3569,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.92857143,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"48","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quantum-chemical","display_name":"Quantum chemical","score":0.7268419861793518},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6751353144645691},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.6640534400939941},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5144219994544983},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3869600296020508},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37573108077049255},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37336763739585876},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36292004585266113},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2659461796283722},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.1239837110042572},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.08403733372688293}],"concepts":[{"id":"https://openalex.org/C2991951333","wikidata":"https://www.wikidata.org/wiki/Q188403","display_name":"Quantum chemical","level":3,"score":0.7268419861793518},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6751353144645691},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.6640534400939941},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5144219994544983},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3869600296020508},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37573108077049255},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37336763739585876},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36292004585266113},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2659461796283722},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.1239837110042572},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.08403733372688293},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-024-00843-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00843-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00843-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:38685101","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38685101","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11059686","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11059686","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11059686/pdf/13321_2024_Article_843.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:66bb7fcff15941be92cc0b330526e683","is_oa":true,"landing_page_url":"https://doaj.org/article/66bb7fcff15941be92cc0b330526e683","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 16, Iss 1, Pp 1-12 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-024-00843-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00843-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00843-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396216328.pdf"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1971275758","https://openalex.org/W1990399577","https://openalex.org/W2008628207","https://openalex.org/W2033757486","https://openalex.org/W2040459007","https://openalex.org/W2080635178","https://openalex.org/W2084786399","https://openalex.org/W2114704115","https://openalex.org/W2123969193","https://openalex.org/W2132525235","https://openalex.org/W2140047797","https://openalex.org/W2581028751","https://openalex.org/W2767891136","https://openalex.org/W2797576574","https://openalex.org/W2803317679","https://openalex.org/W2888164077","https://openalex.org/W2955551200","https://openalex.org/W3034806393","https://openalex.org/W3083032557","https://openalex.org/W3113447514","https://openalex.org/W3186262255","https://openalex.org/W4206367183","https://openalex.org/W4213077304","https://openalex.org/W4214868967","https://openalex.org/W4240541820","https://openalex.org/W4281553035","https://openalex.org/W4307468223","https://openalex.org/W4315703368","https://openalex.org/W4362664882","https://openalex.org/W4372330430","https://openalex.org/W4376226129","https://openalex.org/W4380715275","https://openalex.org/W4381679608","https://openalex.org/W6600075554","https://openalex.org/W6600194071","https://openalex.org/W6600577311","https://openalex.org/W6601048975","https://openalex.org/W6602120790","https://openalex.org/W6611614545"],"related_works":["https://openalex.org/W2062195135","https://openalex.org/W2003932708","https://openalex.org/W1967424056","https://openalex.org/W2284877871","https://openalex.org/W2582753012","https://openalex.org/W2741336069","https://openalex.org/W3136335663","https://openalex.org/W2795079307","https://openalex.org/W2010693641","https://openalex.org/W2138102289"],"abstract_inverted_index":{"Previous":[0],"studies":[1],"have":[2],"shown":[3],"that":[4],"the":[5,39,117,144,163,197,218,229],"three-dimensional":[6],"(3D)":[7],"geometric":[8,43,129,172],"and":[9,23,45,68,82,102,111,116,133,138,149,173,220,234],"electronic":[10,46,131,174],"structure":[11,136,175],"of":[12,48,147,159,196,222,231],"molecules":[13],"play":[14],"a":[15,32,53,70,193,202,214],"crucial":[16],"role":[17],"in":[18,179],"determining":[19],"their":[20],"key":[21],"properties":[22,115,123],"intermolecular":[24],"interactions.":[25],"Therefore,":[26],"it":[27],"is":[28,210,237],"necessary":[29],"to":[30,154,192,212],"establish":[31],"quantum":[33],"chemical":[34,198],"(QC)":[35],"property":[36,56],"database":[37],"containing":[38],"most":[40,118],"stable":[41,119],"3D":[42,120],"conformations":[44],"structures":[47],"molecules.":[49],"In":[50],"this":[51],"study,":[52],"high-quality":[54,204],"QC":[55,114,160,207],"database,":[57],"called":[58],"QuanDB,":[59],"was":[60],"developed,":[61],"which":[62,183],"included":[63],"structurally":[64],"diverse":[65],"molecular":[66,180,188],"entities":[67],"featured":[69],"user-friendly":[71],"interface.":[72],"Currently,":[73],"QuanDB":[74,107,169,209,236],"contains":[75],"154,610":[76],"compounds":[77],"sourced":[78],"from":[79],"public":[80],"databases":[81],"scientific":[83],"literature,":[84],"with":[85,162],"10,125":[86],"scaffolds.":[87],"The":[88],"elemental":[89],"composition":[90],"comprises":[91],"nine":[92],"elements:":[93],"H,":[94],"C,":[95],"O,":[96],"N,":[97],"P,":[98],"S,":[99],"F,":[100],"Cl,":[101],"Br.":[103],"For":[104],"each":[105],"molecule,":[106],"provides":[108,170],"53":[109],"global":[110],"5":[112],"local":[113],"conformation.":[121],"These":[122],"are":[124,184],"divided":[125],"into":[126],"three":[127],"categories:":[128],"structure,":[130,132],"thermodynamics.":[134],"Geometric":[135],"optimization":[137,221],"single":[139],"point":[140],"energy":[141],"calculation":[142],"at":[143,242],"theoretical":[145],"level":[146],"B3LYP-D3(BJ)/6-311G(d)/SMD/water":[148],"B3LYP-D3(BJ)/def2-TZVP/SMD/water,":[150],"respectively,":[151],"were":[152],"applied":[153],"ensure":[155],"highly":[156],"accurate":[157],"calculations":[158],"properties,":[161,208],"computational":[164],"cost":[165],"exceeding":[166],"107":[167],"core-hours.":[168],"high-value":[171],"information":[176],"for":[177,186,206,217],"use":[178],"representation":[181],"models,":[182,225],"critical":[185],"machine-learning-based":[187],"design,":[189],"thereby":[190],"contributing":[191],"comprehensive":[194],"description":[195],"compound":[199],"space.":[200],"As":[201],"new":[203],"dataset":[205],"expected":[211],"become":[213],"benchmark":[215],"tool":[216],"training":[219],"machine":[223],"learning":[224],"thus":[226],"further":[227],"advancing":[228],"development":[230],"novel":[232],"drugs":[233],"materials.":[235],"freely":[238],"available,":[239],"without":[240],"registration,":[241],"https://quandb.cmdrg.com/":[243],".":[244]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-15T09:29:46.208133","created_date":"2025-10-10T00:00:00"}
