{"id":"https://openalex.org/W4390838120","doi":"https://doi.org/10.1186/s13321-024-00801-8","title":"BioisoIdentifier: an online free tool to investigate local structural replacements from PDB","display_name":"BioisoIdentifier: an online free tool to investigate local structural replacements from PDB","publication_year":2024,"publication_date":"2024-01-13","ids":{"openalex":"https://openalex.org/W4390838120","doi":"https://doi.org/10.1186/s13321-024-00801-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/38218937"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-024-00801-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00801-8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00801-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00801-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011921680","display_name":"Tinghao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tinghao Zhang","raw_affiliation_strings":["Xi'an Institute of Flexible Electronics (IFE) and Xi'an Institute of Biomedical Materials & Engineering (IBME), Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"Xi'an Institute of Flexible Electronics (IFE) and Xi'an Institute of Biomedical Materials & Engineering (IBME), Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101291673","display_name":"Shaohua Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaohua Sun","raw_affiliation_strings":["Xi'an Institute of Flexible Electronics (IFE) and Xi'an Institute of Biomedical Materials & Engineering (IBME), Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"Xi'an Institute of Flexible Electronics (IFE) and Xi'an Institute of Biomedical Materials & Engineering (IBME), Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025936951","display_name":"Runzhou Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I148099405","display_name":"Xi'an University of Architecture and Technology","ror":"https://ror.org/04v2j2k71","country_code":"CN","type":"education","lineage":["https://openalex.org/I148099405"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Runzhou Wang","raw_affiliation_strings":["School of Management, Xi'an University of Architecture and Technology, Xi'an, 710055, China"],"affiliations":[{"raw_affiliation_string":"School of Management, Xi'an University of Architecture and Technology, Xi'an, 710055, China","institution_ids":["https://openalex.org/I148099405"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100416891","display_name":"Ting Li","orcid":"https://orcid.org/0000-0002-9028-0362"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ting Li","raw_affiliation_strings":["Xi'an Institute of Flexible Electronics (IFE) and Xi'an Institute of Biomedical Materials & Engineering (IBME), Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"Xi'an Institute of Flexible Electronics (IFE) and Xi'an Institute of Biomedical Materials & Engineering (IBME), Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020847563","display_name":"Bicheng Gan","orcid":"https://orcid.org/0000-0003-0168-6174"},"institutions":[{"id":"https://openalex.org/I921716337","display_name":"Northeast Petroleum University","ror":"https://ror.org/03net5943","country_code":"CN","type":"education","lineage":["https://openalex.org/I921716337"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bicheng Gan","raw_affiliation_strings":["College of Petroleum Engineering, Northeast Petroleum University, Daqing, 163318, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"College of Petroleum Engineering, Northeast Petroleum University, Daqing, 163318, Heilongjiang, China","institution_ids":["https://openalex.org/I921716337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053293332","display_name":"Yuezhou Zhang","orcid":"https://orcid.org/0000-0002-8560-5716"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yuezhou Zhang","raw_affiliation_strings":["Ningbo Institute of Northwestern Polytechnical University, Frontiers Science Center for Flexible Electronics (FSCFE), Key Laboratory of Flexible Electronics of Zhejiang Province, Ningbo Institute of Northwestern Polytechnical University, 218 Qingyi Road, Ningbo, 315103, China. iamyzzhang@nwpu.edu.cn","Xi'an Institute of Flexible Electronics (IFE) and Xi'an Institute of Biomedical Materials & Engineering (IBME), Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China. iamyzzhang@nwpu.edu.cn","Ningbo Institute of Northwestern Polytechnical University, Frontiers Science Center for Flexible Electronics (FSCFE), Key Laboratory of Flexible Electronics of Zhejiang Province, Ningbo Institute of Northwestern Polytechnical University, 218 Qingyi Road, Ningbo, 315103, China"],"affiliations":[{"raw_affiliation_string":"Ningbo Institute of Northwestern Polytechnical University, Frontiers Science Center for Flexible Electronics (FSCFE), Key Laboratory of Flexible Electronics of Zhejiang Province, Ningbo Institute of Northwestern Polytechnical University, 218 Qingyi Road, Ningbo, 315103, China. iamyzzhang@nwpu.edu.cn","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Xi'an Institute of Flexible Electronics (IFE) and Xi'an Institute of Biomedical Materials & Engineering (IBME), Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China. iamyzzhang@nwpu.edu.cn","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Ningbo Institute of Northwestern Polytechnical University, Frontiers Science Center for Flexible Electronics (FSCFE), Key Laboratory of Flexible Electronics of Zhejiang Province, Ningbo Institute of Northwestern Polytechnical University, 218 Qingyi Road, Ningbo, 315103, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5053293332"],"corresponding_institution_ids":["https://openalex.org/I17145004"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":1.1446,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.7754492,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"16","issue":"1","first_page":"7","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.960099995136261,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7679749131202698},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6054823994636536},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5652188062667847},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.5556455254554749},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.549828290939331},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4932824969291687},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4316672682762146},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.4201487898826599},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.4144743084907532},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.41262632608413696},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3297014832496643},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2673528790473938},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2140306830406189},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20403459668159485},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1971961259841919},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.14849787950515747}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7679749131202698},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6054823994636536},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5652188062667847},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.5556455254554749},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.549828290939331},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4932824969291687},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4316672682762146},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.4201487898826599},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.4144743084907532},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.41262632608413696},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3297014832496643},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2673528790473938},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2140306830406189},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20403459668159485},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1971961259841919},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.14849787950515747},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-024-00801-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00801-8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00801-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:38218937","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38218937","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10788035","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10788035","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10788035/pdf/13321_2024_Article_801.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:26bd60a7da5d445da862f4ccde7eec0a","is_oa":true,"landing_page_url":"https://doaj.org/article/26bd60a7da5d445da862f4ccde7eec0a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 16, Iss 1, Pp 1-17 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-024-00801-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00801-8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00801-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6740572206","display_name":null,"funder_award_id":"202003N4006","funder_id":"https://openalex.org/F4320332587","funder_display_name":"Natural Science Foundation of Ningbo"}],"funders":[{"id":"https://openalex.org/F4320309475","display_name":"Northwestern University","ror":"https://ror.org/000e0be47"},{"id":"https://openalex.org/F4320321392","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86"},{"id":"https://openalex.org/F4320332587","display_name":"Natural Science Foundation of Ningbo","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4390838120.pdf"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1507388445","https://openalex.org/W1568666065","https://openalex.org/W1969807932","https://openalex.org/W2013701719","https://openalex.org/W2018621056","https://openalex.org/W2026480331","https://openalex.org/W2037167896","https://openalex.org/W2045253964","https://openalex.org/W2067964678","https://openalex.org/W2088543368","https://openalex.org/W2097475255","https://openalex.org/W2102245393","https://openalex.org/W2132802776","https://openalex.org/W2164567015","https://openalex.org/W2166478947","https://openalex.org/W2169678694","https://openalex.org/W2371861426","https://openalex.org/W2526408712","https://openalex.org/W2550878121","https://openalex.org/W2558999090","https://openalex.org/W2590870150","https://openalex.org/W2766974497","https://openalex.org/W2781783442","https://openalex.org/W2791866201","https://openalex.org/W2804581376","https://openalex.org/W2804870229","https://openalex.org/W2896773769","https://openalex.org/W2938416610","https://openalex.org/W2945809886","https://openalex.org/W2953591152","https://openalex.org/W3001296178","https://openalex.org/W3006696589","https://openalex.org/W3008421908","https://openalex.org/W3034431695","https://openalex.org/W3044388665","https://openalex.org/W3087230005","https://openalex.org/W3089902733","https://openalex.org/W3094017465","https://openalex.org/W3107514001","https://openalex.org/W3153104015","https://openalex.org/W3155418571","https://openalex.org/W3158816708","https://openalex.org/W3159723244","https://openalex.org/W3214285347","https://openalex.org/W4210384733","https://openalex.org/W4210731907","https://openalex.org/W4293475204","https://openalex.org/W4383197984"],"related_works":["https://openalex.org/W4382246684","https://openalex.org/W4387845407","https://openalex.org/W2902857455","https://openalex.org/W4207004502","https://openalex.org/W4212982662","https://openalex.org/W2160244398","https://openalex.org/W2907885506","https://openalex.org/W2022444336","https://openalex.org/W2601867172","https://openalex.org/W4207063555"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2026-03-05T09:29:38.588285","created_date":"2025-10-10T00:00:00"}
