{"id":"https://openalex.org/W4389980189","doi":"https://doi.org/10.1186/s13321-023-00780-2","title":"A workflow for deriving chemical entities from crystallographic data and its application to the Crystallography Open Database","display_name":"A workflow for deriving chemical entities from crystallographic data and its application to the Crystallography Open Database","publication_year":2023,"publication_date":"2023-12-19","ids":{"openalex":"https://openalex.org/W4389980189","doi":"https://doi.org/10.1186/s13321-023-00780-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/38115123"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-023-00780-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00780-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00780-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00780-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065651218","display_name":"Antanas Vaitkus","orcid":"https://orcid.org/0000-0002-5944-1391"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":true,"raw_author_name":"Antanas Vaitkus","raw_affiliation_strings":["Section of Crystallography and Chemical Informatics, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saul\u0117tekio al. 7, Vilnius, LT-10257, Lithuania. antanas.vaitkus@bti.vu.lt","Section of Crystallography and Chemical Informatics, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saul\u0117tekio al. 7, Vilnius, LT-10257, Lithuania"],"raw_orcid":"https://orcid.org/0000-0002-5944-1391","affiliations":[{"raw_affiliation_string":"Section of Crystallography and Chemical Informatics, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saul\u0117tekio al. 7, Vilnius, LT-10257, Lithuania. antanas.vaitkus@bti.vu.lt","institution_ids":["https://openalex.org/I173212132"]},{"raw_affiliation_string":"Section of Crystallography and Chemical Informatics, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saul\u0117tekio al. 7, Vilnius, LT-10257, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084681787","display_name":"Andrius Merkys","orcid":"https://orcid.org/0000-0002-7731-6236"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":false,"raw_author_name":"Andrius Merkys","raw_affiliation_strings":["Section of Crystallography and Chemical Informatics, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saul\u0117tekio al. 7, Vilnius, LT-10257, Lithuania"],"raw_orcid":"https://orcid.org/0000-0002-7731-6236","affiliations":[{"raw_affiliation_string":"Section of Crystallography and Chemical Informatics, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saul\u0117tekio al. 7, Vilnius, LT-10257, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102021785","display_name":"Thomas Sander","orcid":"https://orcid.org/0000-0003-4019-1959"},"institutions":[{"id":"https://openalex.org/I4210136915","display_name":"Idorsia (Switzerland)","ror":"https://ror.org/03va9ng43","country_code":"CH","type":"company","lineage":["https://openalex.org/I4210136915"]},{"id":"https://openalex.org/I7495430","display_name":"Idiap Research Institute","ror":"https://ror.org/05932h694","country_code":"CH","type":"facility","lineage":["https://openalex.org/I7495430"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Thomas Sander","raw_affiliation_strings":["Scientific Computing Drug Discovery, Idorsia Pharmaceuticals Ltd., Hegenheimermattweg 89, Allschwil, 4123, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-4019-1959","affiliations":[{"raw_affiliation_string":"Scientific Computing Drug Discovery, Idorsia Pharmaceuticals Ltd., Hegenheimermattweg 89, Allschwil, 4123, Switzerland","institution_ids":["https://openalex.org/I7495430","https://openalex.org/I4210136915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085426373","display_name":"M. Quir\u00f3s","orcid":"https://orcid.org/0000-0002-1583-4468"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel Quir\u00f3s","raw_affiliation_strings":["Departamento de Qu\u00edmica Inorg\u00e1nica, Universidad de Granada, Granada, 18071, Spain"],"raw_orcid":"https://orcid.org/0000-0002-1583-4468","affiliations":[{"raw_affiliation_string":"Departamento de Qu\u00edmica Inorg\u00e1nica, Universidad de Granada, Granada, 18071, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056842902","display_name":"Paul Thiessen","orcid":"https://orcid.org/0000-0002-1992-2086"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul A. Thiessen","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"],"raw_orcid":"https://orcid.org/0000-0002-1992-2086","affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015494748","display_name":"Evan Bolton","orcid":"https://orcid.org/0000-0002-5959-6190"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evan E. Bolton","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. bolton@ncbi.nlm.nih.gov","National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"],"raw_orcid":"https://orcid.org/0000-0002-5959-6190","affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. bolton@ncbi.nlm.nih.gov","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055816979","display_name":"S. Gra\u017eulis","orcid":"https://orcid.org/0000-0002-7928-5218"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":false,"raw_author_name":"Saulius Gra\u017eulis","raw_affiliation_strings":["Faculty of Mathematics and Informatics, Vilnius University, Naugarduko g. 24, Vilnius, LT-03225, Lithuania","Section of Crystallography and Chemical Informatics, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saul\u0117tekio al. 7, Vilnius, LT-10257, Lithuania"],"raw_orcid":"https://orcid.org/0000-0002-7928-5218","affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Informatics, Vilnius University, Naugarduko g. 24, Vilnius, LT-03225, Lithuania","institution_ids":["https://openalex.org/I173212132"]},{"raw_affiliation_string":"Section of Crystallography and Chemical Informatics, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saul\u0117tekio al. 7, Vilnius, LT-10257, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5065651218"],"corresponding_institution_ids":["https://openalex.org/I173212132"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":23.9021,"has_fulltext":true,"cited_by_count":123,"citation_normalized_percentile":{"value":0.9969988,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"15","issue":"1","first_page":"123","last_page":"123"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9710999727249146,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6726190447807312},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6262379884719849},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5986877679824829},{"id":"https://openalex.org/keywords/atom","display_name":"Atom (system on chip)","score":0.5790166854858398},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5576457977294922},{"id":"https://openalex.org/keywords/orientation","display_name":"Orientation (vector space)","score":0.46181949973106384},{"id":"https://openalex.org/keywords/delocalized-electron","display_name":"Delocalized electron","score":0.4457884728908539},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.4375922977924347},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3986915051937103},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34219083189964294},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33711937069892883},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10790079832077026}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6726190447807312},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6262379884719849},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5986877679824829},{"id":"https://openalex.org/C58312451","wikidata":"https://www.wikidata.org/wiki/Q4817200","display_name":"Atom (system on chip)","level":2,"score":0.5790166854858398},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5576457977294922},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.46181949973106384},{"id":"https://openalex.org/C70050531","wikidata":"https://www.wikidata.org/wiki/Q899089","display_name":"Delocalized electron","level":2,"score":0.4457884728908539},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.4375922977924347},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3986915051937103},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34219083189964294},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33711937069892883},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10790079832077026},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-023-00780-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00780-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00780-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:38115123","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38115123","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10730636","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10730636","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10730636/pdf/13321_2023_Article_780.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:5b4f5ffb853145268e821356880e0fa4","is_oa":true,"landing_page_url":"https://doaj.org/article/5b4f5ffb853145268e821356880e0fa4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-15 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-023-00780-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00780-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00780-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5553842168","display_name":null,"funder_award_id":"MIP-23-87","funder_id":"https://openalex.org/F4320322689","funder_display_name":"Lietuvos Mokslo Taryba"}],"funders":[{"id":"https://openalex.org/F4320322689","display_name":"Lietuvos Mokslo Taryba","ror":"https://ror.org/02gs16m83"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389980189.pdf"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1508604947","https://openalex.org/W1971849220","https://openalex.org/W1973328576","https://openalex.org/W1986378419","https://openalex.org/W2005970380","https://openalex.org/W2034162101","https://openalex.org/W2049126012","https://openalex.org/W2066400775","https://openalex.org/W2070942956","https://openalex.org/W2073404468","https://openalex.org/W2097370873","https://openalex.org/W2102940758","https://openalex.org/W2147085530","https://openalex.org/W2153675433","https://openalex.org/W2169678694","https://openalex.org/W2170214641","https://openalex.org/W2213601517","https://openalex.org/W2315318154","https://openalex.org/W2471232847","https://openalex.org/W2803462582","https://openalex.org/W2925682697","https://openalex.org/W3015452053","https://openalex.org/W3020097213","https://openalex.org/W3208525010","https://openalex.org/W4280504217","https://openalex.org/W4321479733"],"related_works":["https://openalex.org/W2007795634","https://openalex.org/W2362760774","https://openalex.org/W2011222688","https://openalex.org/W2009756778","https://openalex.org/W2060296000","https://openalex.org/W1989648600","https://openalex.org/W2165047858","https://openalex.org/W2781684110","https://openalex.org/W2944123595","https://openalex.org/W2175920982"],"abstract_inverted_index":{"Knowledge":[0],"about":[1,70,102],"the":[2,25,123,149,173,177,185,193],"3-dimensional":[3],"structure,":[4],"orientation":[5],"and":[6,18,41,50,105,172],"interaction":[7],"of":[8,16,24,29,34,48,59,88,125,128,141,156,169],"chemical":[9,72,113,126,142,158],"compounds":[10],"is":[11,22,43,135,160],"important":[12],"in":[13,144,176],"many":[14],"areas":[15],"science":[17],"technology.":[19],"X-ray":[20],"crystallography":[21],"one":[23],"experimental":[26],"techniques":[27],"capable":[28],"providing":[30],"a":[31,38,89,118,139,164],"large":[32],"amount":[33],"structural":[35],"information":[36,69,101],"for":[37,46,122],"given":[39],"compound,":[40],"it":[42,64],"widely":[44],"used":[45],"characterisation":[47],"organic":[49],"metal-organic":[51],"molecules.":[52],"The":[53,133,154,167],"method":[54,134],"provides":[55],"precise":[56],"3D":[57],"coordinates":[58],"atoms":[60],"inside":[61],"crystals,":[62],"however,":[63],"does":[65],"not":[66],"directly":[67],"deliver":[68],"certain":[71],"characteristics":[73],"such":[74,157],"as":[75,108,110,163],"bond":[76],"orders,":[77],"delocalization,":[78],"charges,":[79],"lone":[80,84],"electron":[81],"pairs":[82],"or":[83],"electrons.":[85],"These":[86],"aspects":[87],"molecular":[90],"model":[91],"have":[92],"to":[93,137,187],"be":[94],"derived":[95,165],"from":[96,130],"crystallographic":[97,131,147],"data":[98,190],"using":[99],"refined":[100],"interatomic":[103],"distances":[104],"atom":[106],"types":[107],"well":[109],"employing":[111],"general":[112],"knowledge.":[114],"This":[115],"publication":[116],"describes":[117],"curated":[119],"automatic":[120],"pipeline":[121,180],"derivation":[124],"attributes":[127],"molecules":[129],"models.":[132],"applied":[136],"build":[138],"catalogue":[140,155,171],"entities":[143,159],"an":[145],"open-access":[146],"database,":[148],"Crystallography":[150],"Open":[151],"Database":[152],"(COD).":[153],"provided":[161],"openly":[162],"database.":[166],"content":[168],"this":[170],"problems":[174],"arising":[175],"fully":[178],"automated":[179],"are":[181],"discussed,":[182],"along":[183],"with":[184],"possibilities":[186],"introduce":[188],"manual":[189],"curation":[191],"into":[192],"process.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":20},{"year":2025,"cited_by_count":68},{"year":2024,"cited_by_count":35}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
