{"id":"https://openalex.org/W4387609745","doi":"https://doi.org/10.1186/s13321-023-00768-y","title":"Analysis of metabolites in human gut: illuminating the design of gut-targeted drugs","display_name":"Analysis of metabolites in human gut: illuminating the design of gut-targeted drugs","publication_year":2023,"publication_date":"2023-10-13","ids":{"openalex":"https://openalex.org/W4387609745","doi":"https://doi.org/10.1186/s13321-023-00768-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/37833792"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-023-00768-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00768-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00768-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00768-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025914202","display_name":"Alberto Gil-Pichardo","orcid":null},"institutions":[{"id":"https://openalex.org/I105140100","display_name":"Madrid Institute for Advanced Studies","ror":"https://ror.org/027pk6j83","country_code":"ES","type":"education","lineage":["https://openalex.org/I105140100"]},{"id":"https://openalex.org/I4210143378","display_name":"IMDEA Food","ror":"https://ror.org/04g4ezh90","country_code":"ES","type":"facility","lineage":["https://openalex.org/I105140100","https://openalex.org/I4210143378"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Alberto Gil-Pichardo","raw_affiliation_strings":["Biostatistics and Bioinformatics Unit, IMDEA Food, CEI UAM+CSIC, 28049, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biostatistics and Bioinformatics Unit, IMDEA Food, CEI UAM+CSIC, 28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210143378","https://openalex.org/I105140100","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031336297","display_name":"Andr\u00e9s S\u00e1nchez-Ruiz","orcid":"https://orcid.org/0000-0001-7393-542X"},"institutions":[{"id":"https://openalex.org/I105140100","display_name":"Madrid Institute for Advanced Studies","ror":"https://ror.org/027pk6j83","country_code":"ES","type":"education","lineage":["https://openalex.org/I105140100"]},{"id":"https://openalex.org/I4210143378","display_name":"IMDEA Food","ror":"https://ror.org/04g4ezh90","country_code":"ES","type":"facility","lineage":["https://openalex.org/I105140100","https://openalex.org/I4210143378"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Andr\u00e9s S\u00e1nchez-Ruiz","raw_affiliation_strings":["Biostatistics and Bioinformatics Unit, IMDEA Food, CEI UAM+CSIC, 28049, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biostatistics and Bioinformatics Unit, IMDEA Food, CEI UAM+CSIC, 28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210143378","https://openalex.org/I105140100","https://openalex.org/I63634437"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019277106","display_name":"Gonzalo Colmenarejo","orcid":"https://orcid.org/0000-0002-8249-4547"},"institutions":[{"id":"https://openalex.org/I105140100","display_name":"Madrid Institute for Advanced Studies","ror":"https://ror.org/027pk6j83","country_code":"ES","type":"education","lineage":["https://openalex.org/I105140100"]},{"id":"https://openalex.org/I4210143378","display_name":"IMDEA Food","ror":"https://ror.org/04g4ezh90","country_code":"ES","type":"facility","lineage":["https://openalex.org/I105140100","https://openalex.org/I4210143378"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gonzalo Colmenarejo","raw_affiliation_strings":["Biostatistics and Bioinformatics Unit, IMDEA Food, CEI UAM+CSIC, 28049, Madrid, Spain. gonzalo.colmenarejo@imdea.org","Biostatistics and Bioinformatics Unit, IMDEA Food, CEI UAM+CSIC, 28049, Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0002-8249-4547","affiliations":[{"raw_affiliation_string":"Biostatistics and Bioinformatics Unit, IMDEA Food, CEI UAM+CSIC, 28049, Madrid, Spain. gonzalo.colmenarejo@imdea.org","institution_ids":["https://openalex.org/I105140100","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Biostatistics and Bioinformatics Unit, IMDEA Food, CEI UAM+CSIC, 28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210143378","https://openalex.org/I105140100","https://openalex.org/I63634437"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5025914202"],"corresponding_institution_ids":["https://openalex.org/I105140100","https://openalex.org/I4210143378","https://openalex.org/I63634437"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.7497,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.73148554,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"15","issue":"1","first_page":"96","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4341433644294739},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38993826508522034},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.32092374563217163},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29708802700042725},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1824171245098114}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4341433644294739},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38993826508522034},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.32092374563217163},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29708802700042725},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1824171245098114}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-023-00768-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00768-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00768-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:37833792","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37833792","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10571276","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10571276","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10571276/pdf/13321_2023_Article_768.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:257e73e497734f3abbf35c895daff5d3","is_oa":true,"landing_page_url":"https://doaj.org/article/257e73e497734f3abbf35c895daff5d3","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-20 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-023-00768-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00768-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00768-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1622782223","display_name":null,"funder_award_id":"MCIN/AEI/10","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G1957123162","display_name":null,"funder_award_id":"PIPF-2022/SAL-GL-26278","funder_id":"https://openalex.org/F4320313831","funder_display_name":"Comunidad de Madrid"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4268038854","display_name":null,"funder_award_id":"PID2021-127318OB-I00","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G5158502759","display_name":null,"funder_award_id":"PEJ-2020-AI/BIO-17904","funder_id":"https://openalex.org/F4320313831","funder_display_name":"Comunidad de Madrid"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7535663061","display_name":null,"funder_award_id":"AEI/10.","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8970324513","display_name":null,"funder_award_id":"PID2021-127318OB-I00","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320313831","display_name":"Comunidad de Madrid","ror":null},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387609745.pdf"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W28412257","https://openalex.org/W197967138","https://openalex.org/W1480098000","https://openalex.org/W1663154925","https://openalex.org/W1715339469","https://openalex.org/W1902019255","https://openalex.org/W1965443741","https://openalex.org/W1975202380","https://openalex.org/W1978709058","https://openalex.org/W1981737096","https://openalex.org/W1984994707","https://openalex.org/W1999376421","https://openalex.org/W2003932717","https://openalex.org/W2008127220","https://openalex.org/W2025580327","https://openalex.org/W2034549041","https://openalex.org/W2052907531","https://openalex.org/W2060531713","https://openalex.org/W2065935299","https://openalex.org/W2105649494","https://openalex.org/W2131186249","https://openalex.org/W2135732933","https://openalex.org/W2142328147","https://openalex.org/W2152681556","https://openalex.org/W2157619122","https://openalex.org/W2280564115","https://openalex.org/W2548357532","https://openalex.org/W2594247694","https://openalex.org/W2731629763","https://openalex.org/W2762849219","https://openalex.org/W2767891136","https://openalex.org/W2777024363","https://openalex.org/W2797413896","https://openalex.org/W2804460705","https://openalex.org/W2806547269","https://openalex.org/W2884430236","https://openalex.org/W2913972921","https://openalex.org/W2952896020","https://openalex.org/W2990249310","https://openalex.org/W2990351990","https://openalex.org/W2994651836","https://openalex.org/W2996031741","https://openalex.org/W3006796998","https://openalex.org/W3007415664","https://openalex.org/W3012279685","https://openalex.org/W3014111203","https://openalex.org/W3021491219","https://openalex.org/W3023497296","https://openalex.org/W3034548692","https://openalex.org/W3036012425","https://openalex.org/W3044752608","https://openalex.org/W3046227393","https://openalex.org/W3082081167","https://openalex.org/W3083241614","https://openalex.org/W3107083588","https://openalex.org/W3110984215","https://openalex.org/W3135404041","https://openalex.org/W3179003011","https://openalex.org/W3215814570","https://openalex.org/W4200132238","https://openalex.org/W4200233730","https://openalex.org/W4200606306","https://openalex.org/W4206447491","https://openalex.org/W4206517007","https://openalex.org/W4223632224","https://openalex.org/W4224436908","https://openalex.org/W4233056867","https://openalex.org/W4248107770","https://openalex.org/W4286487916","https://openalex.org/W4290643769","https://openalex.org/W4297179162","https://openalex.org/W4299878816","https://openalex.org/W4313280135","https://openalex.org/W4365443923","https://openalex.org/W4384526017","https://openalex.org/W4385741356"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"Gut-targeted":[0],"drugs":[1,105],"provide":[2,53],"a":[3,67,116],"new":[4],"drug":[5],"modality":[6],"besides":[7],"that":[8,13,99],"of":[9,20,23,49,58,70,97,131],"oral,":[10],"systemic":[11,87],"molecules,":[12],"could":[14,100],"tap":[15],"into":[16],"the":[17,47,56,62,107,129,139],"growing":[18],"knowledge":[19],"gut":[21,40,50,71,122],"metabolites":[22,51,98],"bacterial":[24],"or":[25,43,77],"host":[26],"origin":[27],"and":[28,34,82,113,149],"their":[29,37],"involvement":[30],"in":[31,80,124,128,138,142],"biological":[32],"processes":[33],"health":[35],"through":[36],"interaction":[38],"with":[39,75,85,133,144],"targets":[41],"(bacterial":[42],"host,":[44],"too).":[45],"Understanding":[46],"properties":[48],"can":[52],"guidance":[54],"for":[55,93],"design":[57,104,130],"gut-targeted":[59],"drugs.":[60,88],"In":[61,109],"present":[63,78],"work":[64],"we":[65,111],"analyze":[66],"large":[68],"set":[69],"metabolites,":[72],"both":[73],"shared":[74],"serum":[76],"only":[79],"gut,":[81,140],"compare":[83],"them":[84],"oral":[86],"We":[89],"find":[90],"patterns":[91],"specific":[92],"these":[94],"two":[95],"subsets":[96],"be":[101],"used":[102],"to":[103,120,126,136],"targeting":[106],"gut.":[108],"addition,":[110],"develop":[112],"openly":[114],"share":[115],"Super":[117],"Learner":[118],"model":[119],"predict":[121],"permanence,":[123],"order":[125],"aid":[127],"molecules":[132,143],"appropriate":[134],"profiles":[135],"remain":[137],"resulting":[141],"putatively":[145],"reduced":[146],"secondary":[147],"effects":[148],"better":[150],"pharmacokinetics.":[151]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-01T06:05:34.837733","created_date":"2025-10-10T00:00:00"}
