{"id":"https://openalex.org/W4387670873","doi":"https://doi.org/10.1186/s13321-023-00762-4","title":"Cheminformatics Microservice: unifying access to open cheminformatics toolkits","display_name":"Cheminformatics Microservice: unifying access to open cheminformatics toolkits","publication_year":2023,"publication_date":"2023-10-16","ids":{"openalex":"https://openalex.org/W4387670873","doi":"https://doi.org/10.1186/s13321-023-00762-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/37845745"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-023-00762-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00762-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00762-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00762-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113023836","display_name":"V Chandrasekhar","orcid":null},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Venkata Chandrasekhar","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033485831","display_name":"Nisha Sharma","orcid":"https://orcid.org/0000-0003-3991-0768"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nisha Sharma","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001536528","display_name":"Jonas Schaub","orcid":"https://orcid.org/0000-0003-1554-6666"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Schaub","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040194803","display_name":"Christoph Steinbeck","orcid":"https://orcid.org/0000-0001-6966-0814"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Steinbeck","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017832889","display_name":"Kohulan Rajan","orcid":"https://orcid.org/0000-0003-1066-7792"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kohulan Rajan","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany. kohulan.rajan@uni-jena.de","Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany. kohulan.rajan@uni-jena.de","institution_ids":[]},{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5113023836"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":6.4893,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.96476988,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"98","last_page":"98"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.9588463306427002},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.814338743686676},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7664164304733276},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5419439077377319},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5228193998336792},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4980428218841553},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45534831285476685},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.43863749504089355},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40130579471588135},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32174089550971985},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2520716190338135},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20696762204170227},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19845208525657654}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.9588463306427002},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.814338743686676},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7664164304733276},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5419439077377319},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5228193998336792},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4980428218841553},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45534831285476685},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.43863749504089355},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40130579471588135},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32174089550971985},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2520716190338135},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20696762204170227},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19845208525657654},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-023-00762-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00762-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00762-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:37845745","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37845745","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10577930","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10577930","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10577930/pdf/13321_2023_Article_762.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c65dae51fddd4254a09f7863ef9ba27b","is_oa":true,"landing_page_url":"https://doaj.org/article/c65dae51fddd4254a09f7863ef9ba27b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-11 (2023)","raw_type":"article"},{"id":"pmh:oai:www.db-thueringen.de:dbt_mods_00063739","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:gbv:27-dbt-63739-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400120","display_name":"Common Library Network (Der Gemeinsame Bibliotheksverbund)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210149878","host_organization_name":"Verbundzentrale des GBV","host_organization_lineage":["https://openalex.org/I4210149878"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:Article"}],"best_oa_location":{"id":"doi:10.1186/s13321-023-00762-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00762-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00762-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.46000000834465027,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G6646511001","display_name":null,"funder_award_id":"239748522","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7611810336","display_name":null,"funder_award_id":"441958208","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320313941","display_name":"Friedrich-Schiller-Universit\u00e4t Jena","ror":"https://ror.org/05qpz1x62"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387670873.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1508604947","https://openalex.org/W1975147762","https://openalex.org/W1999440281","https://openalex.org/W2011703027","https://openalex.org/W2015854884","https://openalex.org/W2016088798","https://openalex.org/W2038702914","https://openalex.org/W2064963922","https://openalex.org/W2102110064","https://openalex.org/W2140047797","https://openalex.org/W2148797284","https://openalex.org/W2169678694","https://openalex.org/W2302501749","https://openalex.org/W2541640578","https://openalex.org/W2548357532","https://openalex.org/W2558999090","https://openalex.org/W2622236128","https://openalex.org/W2762711363","https://openalex.org/W2771030034","https://openalex.org/W2884367066","https://openalex.org/W2887815471","https://openalex.org/W2914775513","https://openalex.org/W2952886702","https://openalex.org/W2976869771","https://openalex.org/W3009321976","https://openalex.org/W3045928028","https://openalex.org/W3082081167","https://openalex.org/W3097195042","https://openalex.org/W3108923388","https://openalex.org/W3112143385","https://openalex.org/W3116457427","https://openalex.org/W3119007659","https://openalex.org/W3130247384","https://openalex.org/W3139477189","https://openalex.org/W3158543275","https://openalex.org/W4205853425","https://openalex.org/W4226381651","https://openalex.org/W4230219062","https://openalex.org/W4237346669","https://openalex.org/W4239167359","https://openalex.org/W4255185917","https://openalex.org/W4281786772","https://openalex.org/W4281807419","https://openalex.org/W4285362283","https://openalex.org/W4306179830","https://openalex.org/W4321373915","https://openalex.org/W4323050593","https://openalex.org/W4382198650","https://openalex.org/W4382777249","https://openalex.org/W4386001223"],"related_works":["https://openalex.org/W1573015311","https://openalex.org/W2889938001","https://openalex.org/W4386509167","https://openalex.org/W3165034028","https://openalex.org/W1570419641","https://openalex.org/W4293771607","https://openalex.org/W2296499206","https://openalex.org/W132037564","https://openalex.org/W4405389230","https://openalex.org/W4405391376"],"abstract_inverted_index":{"In":[0,36,69],"recent":[1],"years,":[2],"cheminformatics":[3,19,58],"has":[4],"experienced":[5],"significant":[6],"advancements":[7],"through":[8,86],"the":[9,41,87,102,131,165],"development":[10],"of":[11,56,130],"new":[12],"open-source":[13,45],"software":[14,95],"tools":[15],"based":[16,90],"on":[17,91,118,145],"various":[18],"programming":[20],"toolkits.":[21],"However,":[22],"adopting":[23],"these":[24],"toolkits":[25],"presents":[26],"challenges,":[27],"including":[28],"proper":[29],"installation,":[30],"setup,":[31],"deployment,":[32],"and":[33,66,77,105,113,120,153,156],"compatibility":[34],"management.":[35],"this":[37],"work,":[38],"we":[39],"present":[40],"Cheminformatics":[42,88],"Microservice.":[43],"This":[44],"solution":[46],"provides":[47],"a":[48],"unified":[49],"interface":[50],"for":[51],"accessing":[52],"commonly":[53],"used":[54],"functionalities":[55,73,103],"multiple":[57],"toolkits,":[59],"namely":[60],"RDKit,":[61],"Chemistry":[62],"Development":[63],"Kit":[64],"(CDK),":[65],"Open":[67],"Babel.":[68],"addition,":[70],"more":[71],"advanced":[72],"like":[74],"structure":[75],"generation":[76],"Optical":[78],"Chemical":[79],"Structure":[80],"Recognition":[81],"(OCSR)":[82],"are":[83],"made":[84],"available":[85,135],"Microservice":[89],"pre-existing":[92],"tools.":[93],"The":[94,139],"service":[96],"also":[97],"enables":[98],"developers":[99],"to":[100,106],"extend":[101],"easily":[104],"seamlessly":[107],"integrate":[108],"them":[109],"with":[110],"existing":[111],"workflows":[112],"applications.":[114],"It":[115],"is":[116,133,142],"built":[117],"FastAPI":[119],"containerized":[121],"using":[122],"Docker,":[123],"making":[124],"it":[125],"highly":[126],"scalable.":[127],"An":[128],"instance":[129],"microservice":[132],"publicly":[134,143],"at":[136,164],"https://api.naturalproducts.net":[137],".":[138,169],"source":[140],"code":[141],"accessible":[144],"GitHub,":[146],"accompanied":[147],"by":[148],"comprehensive":[149],"documentation,":[150],"version":[151],"control,":[152],"continuous":[154],"integration":[155],"deployment":[157],"workflows.":[158],"All":[159],"resources":[160],"can":[161],"be":[162],"found":[163],"following":[166],"link:":[167],"https://github.com/Steinbeck-Lab/cheminformatics-microservice":[168]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
