{"id":"https://openalex.org/W4386569608","doi":"https://doi.org/10.1186/s13321-023-00757-1","title":"Patch seriation to visualize data and model parameters","display_name":"Patch seriation to visualize data and model parameters","publication_year":2023,"publication_date":"2023-09-09","ids":{"openalex":"https://openalex.org/W4386569608","doi":"https://doi.org/10.1186/s13321-023-00757-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/37689697"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-023-00757-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00757-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00757-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00757-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083119259","display_name":"Rita Lasfar","orcid":null},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"Rita Lasfar","raw_affiliation_strings":["Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny s\u00e9t\u00e1ny 1/a, Budapest, 1117, Hungary"],"affiliations":[{"raw_affiliation_string":"Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny s\u00e9t\u00e1ny 1/a, Budapest, 1117, Hungary","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021368435","display_name":"Gergely T\u00f3th","orcid":"https://orcid.org/0000-0002-5146-5700"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Gergely T\u00f3th","raw_affiliation_strings":["Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny s\u00e9t\u00e1ny 1/a, Budapest, 1117, Hungary. gergely.janos.toth@ttk.elte.hu","Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny s\u00e9t\u00e1ny 1/a, Budapest, 1117, Hungary"],"affiliations":[{"raw_affiliation_string":"Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny s\u00e9t\u00e1ny 1/a, Budapest, 1117, Hungary. gergely.janos.toth@ttk.elte.hu","institution_ids":["https://openalex.org/I106118109"]},{"raw_affiliation_string":"Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny s\u00e9t\u00e1ny 1/a, Budapest, 1117, Hungary","institution_ids":["https://openalex.org/I106118109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5083119259"],"corresponding_institution_ids":["https://openalex.org/I106118109"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.1713,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.56532524,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"15","issue":"1","first_page":"78","last_page":"78"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7265766263008118},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.6777873039245605},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6679908037185669},{"id":"https://openalex.org/keywords/seriation","display_name":"Seriation (archaeology)","score":0.6530616283416748},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6193597316741943},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5035962462425232},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4956873655319214},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48926398158073425},{"id":"https://openalex.org/keywords/variable","display_name":"Variable (mathematics)","score":0.4882092773914337},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3753991723060608},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3752131462097168},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19917669892311096},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1118125319480896},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.09535911679267883},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.08814367651939392}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7265766263008118},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.6777873039245605},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6679908037185669},{"id":"https://openalex.org/C103303479","wikidata":"https://www.wikidata.org/wiki/Q358095","display_name":"Seriation (archaeology)","level":2,"score":0.6530616283416748},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6193597316741943},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5035962462425232},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4956873655319214},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48926398158073425},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.4882092773914337},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3753991723060608},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3752131462097168},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19917669892311096},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1118125319480896},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.09535911679267883},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.08814367651939392},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-023-00757-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00757-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00757-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:37689697","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37689697","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:edit.elte.hu:10831/107891","is_oa":true,"landing_page_url":"http://hdl.handle.net/10831/107891","pdf_url":"https://edit.elte.hu/xmlui/bitstream/10831/107891/1/34133585.pdf","source":{"id":"https://openalex.org/S4306400126","display_name":"ELTE Digital Institutional Repository (EDIT) (E\u00f6tv\u00f6s Lor\u00e1nd University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I106118109","host_organization_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","host_organization_lineage":["https://openalex.org/I106118109"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10492365","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10492365","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10492365/pdf/13321_2023_Article_757.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:bea7cbff588745a6b5ec6ef12f2c04b0","is_oa":true,"landing_page_url":"https://doaj.org/article/bea7cbff588745a6b5ec6ef12f2c04b0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-17 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-023-00757-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00757-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00757-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G1511255020","display_name":null,"funder_award_id":"K-128136","funder_id":"https://openalex.org/F4320326762","funder_display_name":"Nemzeti Kutat\u00e1si Fejleszt\u00e9si \u00e9s Innov\u00e1ci\u00f3s Hivatal"}],"funders":[{"id":"https://openalex.org/F4320326124","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd Tudom\u00e1nyegyetem","ror":"https://ror.org/01jsq2704"},{"id":"https://openalex.org/F4320326762","display_name":"Nemzeti Kutat\u00e1si Fejleszt\u00e9si \u00e9s Innov\u00e1ci\u00f3s Hivatal","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4386569608.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W38206254","https://openalex.org/W1493217831","https://openalex.org/W1552509723","https://openalex.org/W1958518373","https://openalex.org/W2014736986","https://openalex.org/W2036328877","https://openalex.org/W2037394096","https://openalex.org/W2051841715","https://openalex.org/W2065835331","https://openalex.org/W2097202014","https://openalex.org/W2133120537","https://openalex.org/W2138180390","https://openalex.org/W2149348205","https://openalex.org/W2273621377","https://openalex.org/W2312474531","https://openalex.org/W2323058157","https://openalex.org/W2428226225","https://openalex.org/W2569687584","https://openalex.org/W2702050362","https://openalex.org/W2789851627","https://openalex.org/W2962711796","https://openalex.org/W2977595407","https://openalex.org/W3093687066","https://openalex.org/W4205810926","https://openalex.org/W4214521124","https://openalex.org/W4229688926","https://openalex.org/W4230568560","https://openalex.org/W4240773179","https://openalex.org/W4255049408","https://openalex.org/W4283750463","https://openalex.org/W6887835926","https://openalex.org/W6904827207","https://openalex.org/W6906805963","https://openalex.org/W6942735421","https://openalex.org/W6962849450"],"related_works":["https://openalex.org/W1573015311","https://openalex.org/W2889938001","https://openalex.org/W4386509167","https://openalex.org/W3165034028","https://openalex.org/W1570419641","https://openalex.org/W4293771607","https://openalex.org/W2003388069","https://openalex.org/W2296499206","https://openalex.org/W2094625922","https://openalex.org/W2558461359"],"abstract_inverted_index":{"We":[0,103],"developed":[1],"a":[2,31,36,63],"new":[3],"seriation":[4],"merit":[5],"function":[6,38],"for":[7,80],"enhancing":[8],"the":[9,22,43,67,81,90,105,108,136,139,151],"visual":[10],"information":[11],"of":[12,25,69,92,107,141,150,162],"data":[13,60,94,101,112,124],"matrices.":[14],"A":[15],"local":[16,44],"similarity":[17,24,68],"matrix":[18],"is":[19,28,39,71],"calculated,":[20],"where":[21],"average":[23],"neighbouring":[26],"objects":[27,70],"calculated":[29],"in":[30,62,89,125],"limited":[32],"variable":[33],"space":[34],"and":[35,46,54,76,95,122,127,138,165],"global":[37],"constructed":[40],"to":[41,155],"maximize":[42],"similarities":[45],"cluster":[47],"them":[48],"into":[49],"patches":[50],"by":[51,73,146,159],"simple":[52],"row":[53],"column":[55],"ordering.":[56],"The":[57,84,130],"method":[58,85,109,131],"identifies":[59],"clusters":[61,161],"powerful":[64],"way,":[65],"if":[66],"caused":[72],"some":[74],"variables":[75,78,164],"these":[77],"differ":[79],"distinct":[82],"clusters.":[83],"can":[86,132],"be":[87,133],"used":[88,134],"presence":[91],"missing":[93],"also":[96],"on":[97,110,114],"more":[98],"than":[99],"two-dimensional":[100],"arrays.":[102],"show":[104],"feasibility":[106],"different":[111,148],"sets:":[113],"QSAR,":[115],"chemical,":[116],"material":[117],"science,":[118,120],"food":[119],"cheminformatics":[121],"environmental":[123],"two-":[126],"three-dimensional":[128],"cases.":[129],"during":[135],"development":[137],"interpretation":[140],"artificial":[142],"neural":[143],"network":[144],"models":[145,158],"seriating":[147],"features":[149],"models.":[152],"It":[153],"helps":[154],"identify":[156],"interpretable":[157],"elucidating":[160],"objects,":[163],"hidden":[166],"layer":[167],"neurons.":[168]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
