{"id":"https://openalex.org/W4386773933","doi":"https://doi.org/10.1186/s13321-023-00756-2","title":"rMSIfragment: improving MALDI-MSI lipidomics through automated in-source fragment annotation","display_name":"rMSIfragment: improving MALDI-MSI lipidomics through automated in-source fragment annotation","publication_year":2023,"publication_date":"2023-09-15","ids":{"openalex":"https://openalex.org/W4386773933","doi":"https://doi.org/10.1186/s13321-023-00756-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/37715285"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-023-00756-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00756-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00756-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00756-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055282139","display_name":"Gerard Baquer","orcid":"https://orcid.org/0000-0002-4433-4972"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Gerard Baquer","raw_affiliation_strings":["Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain. gerard.baquer@alumni.urv.cat","Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain. gerard.baquer@alumni.urv.cat","institution_ids":[]},{"raw_affiliation_string":"Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034100739","display_name":"Lluc Sement\u00e9","orcid":"https://orcid.org/0000-0001-9956-6570"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Lluc Sement\u00e9","raw_affiliation_strings":["Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062192621","display_name":"Pere R\u00e0fols","orcid":"https://orcid.org/0000-0002-9240-4058"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pere R\u00e0fols","raw_affiliation_strings":["Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain. pere.rafols@urv.cat","Institut D'Investigacio Sanitaria Pere Virgili, Tarragona, Spain. pere.rafols@urv.cat","Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders (CIBERDEM), Madrid, Spain. pere.rafols@urv.cat","Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain. pere.rafols@urv.cat","institution_ids":[]},{"raw_affiliation_string":"Institut D'Investigacio Sanitaria Pere Virgili, Tarragona, Spain. pere.rafols@urv.cat","institution_ids":[]},{"raw_affiliation_string":"Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders (CIBERDEM), Madrid, Spain. pere.rafols@urv.cat","institution_ids":[]},{"raw_affiliation_string":"Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024217804","display_name":"Luc\u00eda Mart\u00edn\u2010Sa\u00edz","orcid":"https://orcid.org/0000-0003-1135-0842"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Luc\u00eda Mart\u00edn-Saiz","raw_affiliation_strings":["Department of Physical Chemistry, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032173465","display_name":"Christoph Bookmeyer","orcid":"https://orcid.org/0000-0002-3479-3841"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"Christoph Bookmeyer","raw_affiliation_strings":["Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","Institute of Hygiene, University of M\u00fcnster, M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]},{"raw_affiliation_string":"Institute of Hygiene, University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073193777","display_name":"Jos\u00e9 A. Fern\u00e1ndez","orcid":"https://orcid.org/0000-0002-7315-2326"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 A. Fern\u00e1ndez","raw_affiliation_strings":["Department of Physical Chemistry, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084239219","display_name":"Xavier Correig","orcid":"https://orcid.org/0000-0002-6902-3054"},"institutions":[{"id":"https://openalex.org/I4210101772","display_name":"Institut d'Investigaci\u00f3 Sanit\u00e0ria Pere Virgili","ror":"https://ror.org/01av3a615","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101772","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Xavier Correig","raw_affiliation_strings":["Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","Institut D'Investigacio Sanitaria Pere Virgili, Tarragona, Spain","Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders (CIBERDEM), Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]},{"raw_affiliation_string":"Institut D'Investigacio Sanitaria Pere Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I4210101772"]},{"raw_affiliation_string":"Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders (CIBERDEM), Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048397358","display_name":"Mar\u00eda Garc\u00eda\u2010Altares","orcid":"https://orcid.org/0000-0003-4255-1487"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]},{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Garc\u00eda-Altares","raw_affiliation_strings":["Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders (CIBERDEM), Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering, University Rovira I Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]},{"raw_affiliation_string":"Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders (CIBERDEM), Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5055282139"],"corresponding_institution_ids":["https://openalex.org/I55952717"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.466,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.89330437,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"80","last_page":"80"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragmentation","display_name":"Fragmentation (computing)","score":0.6086551547050476},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5947622656822205},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5547658801078796},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5359305739402771},{"id":"https://openalex.org/keywords/lipidomics","display_name":"Lipidomics","score":0.5055687427520752},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.5017118453979492},{"id":"https://openalex.org/keywords/mass-spectrometry-imaging","display_name":"Mass spectrometry imaging","score":0.48502036929130554},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.45713767409324646},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4567687213420868},{"id":"https://openalex.org/keywords/matrix-assisted-laser-desorption/ionization","display_name":"Matrix-assisted laser desorption/ionization","score":0.45261910557746887},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4496602416038513},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.4482392370700836},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.447135865688324},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.35743939876556396},{"id":"https://openalex.org/keywords/desorption","display_name":"Desorption","score":0.14474248886108398},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13527241349220276},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12498453259468079},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09666639566421509},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08670875430107117}],"concepts":[{"id":"https://openalex.org/C191015642","wikidata":"https://www.wikidata.org/wiki/Q1132459","display_name":"Fragmentation (computing)","level":2,"score":0.6086551547050476},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5947622656822205},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5547658801078796},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5359305739402771},{"id":"https://openalex.org/C58017582","wikidata":"https://www.wikidata.org/wiki/Q6556376","display_name":"Lipidomics","level":2,"score":0.5055687427520752},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.5017118453979492},{"id":"https://openalex.org/C24066741","wikidata":"https://www.wikidata.org/wiki/Q3796564","display_name":"Mass spectrometry imaging","level":3,"score":0.48502036929130554},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.45713767409324646},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4567687213420868},{"id":"https://openalex.org/C75280812","wikidata":"https://www.wikidata.org/wiki/Q190382","display_name":"Matrix-assisted laser desorption/ionization","level":4,"score":0.45261910557746887},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4496602416038513},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.4482392370700836},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.447135865688324},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.35743939876556396},{"id":"https://openalex.org/C162711632","wikidata":"https://www.wikidata.org/wiki/Q905514","display_name":"Desorption","level":3,"score":0.14474248886108398},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13527241349220276},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12498453259468079},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09666639566421509},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08670875430107117},{"id":"https://openalex.org/C150394285","wikidata":"https://www.wikidata.org/wiki/Q180254","display_name":"Adsorption","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-023-00756-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00756-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00756-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:37715285","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37715285","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10504721","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10504721","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10504721/pdf/13321_2023_Article_756.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:cea9060368d24e95b3a7d674bf30cfd7","is_oa":true,"landing_page_url":"https://doaj.org/article/cea9060368d24e95b3a7d674bf30cfd7","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-14 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-023-00756-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00756-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00756-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7882948083","display_name":null,"funder_award_id":"2017PMF-PIPF-60","funder_id":"https://openalex.org/F4320324497","funder_display_name":"Universitat Rovira i Virgili"}],"funders":[{"id":"https://openalex.org/F4320320989","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34"},{"id":"https://openalex.org/F4320324497","display_name":"Universitat Rovira i Virgili","ror":"https://ror.org/00g5sqv46"},{"id":"https://openalex.org/F4320338354","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4386773933.pdf"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1935434993","https://openalex.org/W2016657862","https://openalex.org/W2017044409","https://openalex.org/W2020222216","https://openalex.org/W2032555174","https://openalex.org/W2045825094","https://openalex.org/W2057652593","https://openalex.org/W2069701412","https://openalex.org/W2074326790","https://openalex.org/W2084375915","https://openalex.org/W2096057003","https://openalex.org/W2101053757","https://openalex.org/W2167792766","https://openalex.org/W2285468881","https://openalex.org/W2328831822","https://openalex.org/W2553654192","https://openalex.org/W2586644082","https://openalex.org/W2597856736","https://openalex.org/W2611214388","https://openalex.org/W2797665888","https://openalex.org/W2804360210","https://openalex.org/W2905767358","https://openalex.org/W2908927563","https://openalex.org/W2912347251","https://openalex.org/W2922168212","https://openalex.org/W2922522932","https://openalex.org/W2936573766","https://openalex.org/W2942412122","https://openalex.org/W2948515603","https://openalex.org/W2990476273","https://openalex.org/W3005261778","https://openalex.org/W3006540686","https://openalex.org/W3007236030","https://openalex.org/W3009210840","https://openalex.org/W3011959498","https://openalex.org/W3013348625","https://openalex.org/W3014710114","https://openalex.org/W3017343831","https://openalex.org/W3036532504","https://openalex.org/W3088863208","https://openalex.org/W3091047196","https://openalex.org/W3110181119","https://openalex.org/W3129061110","https://openalex.org/W3135204955","https://openalex.org/W3143784018","https://openalex.org/W3164459231","https://openalex.org/W3164473061","https://openalex.org/W3164968925","https://openalex.org/W3194841450","https://openalex.org/W3195212109","https://openalex.org/W3195466348","https://openalex.org/W4205646236","https://openalex.org/W4210308942","https://openalex.org/W4214818937","https://openalex.org/W4220689882","https://openalex.org/W4220916825","https://openalex.org/W4285392326","https://openalex.org/W4286382916","https://openalex.org/W4288037956","https://openalex.org/W4288738153","https://openalex.org/W4292183618","https://openalex.org/W4294710511","https://openalex.org/W4298006543","https://openalex.org/W4378803046"],"related_works":["https://openalex.org/W2132293360","https://openalex.org/W36201071","https://openalex.org/W2143740707","https://openalex.org/W1965955027","https://openalex.org/W2109944965","https://openalex.org/W2022978558","https://openalex.org/W2090625804","https://openalex.org/W4393284811","https://openalex.org/W2017349873","https://openalex.org/W2624499641"],"abstract_inverted_index":{"Matrix-Assisted":[0],"Laser":[1],"Desorption":[2],"Ionization":[3],"Mass":[4],"Spectrometry":[5],"Imaging":[6],"(MALDI-MSI)":[7],"spatially":[8],"resolves":[9],"the":[10,31,42,56,103,133,154],"chemical":[11],"composition":[12],"of":[13,17,33,44,58,105,135,156],"tissues.":[14],"Lipids":[15],"are":[16,92],"particular":[18],"interest,":[19],"as":[20,146],"they":[21],"influence":[22],"important":[23],"biological":[24],"processes":[25],"in":[26,35,88,107],"health":[27],"and":[28,66,81,112,122,152],"disease.":[29],"However,":[30],"identification":[32],"lipids":[34,87],"MALDI-MSI":[36,119],"remains":[37],"a":[38,95],"challenge":[39],"due":[40],"to":[41,62,84,117,148],"lack":[43],"chromatographic":[45],"separation":[46],"or":[47],"untargeted":[48],"tandem":[49],"mass":[50],"spectrometry.":[51],"Recent":[52],"studies":[53],"have":[54],"proposed":[55],"use":[57],"MALDI":[59],"in-source":[60,130,142],"fragmentation":[61,82,143],"infer":[63],"structural":[64],"information":[65],"aid":[67],"identification.":[68],"Here":[69],"we":[70,126],"present":[71],"rMSIfragment,":[72],"an":[73,100],"open-source":[74],"R":[75],"package":[76],"that":[77,98,128],"exploits":[78],"known":[79],"adducts":[80],"pathways":[83],"confidently":[85],"annotate":[86],"MALDI-MSI.":[89],"The":[90],"annotations":[91],"ranked":[93],"using":[94,110],"novel":[96],"score":[97],"demonstrates":[99],"area":[101],"under":[102],"curve":[104],"0.7":[106],"ROC":[108],"analyses":[109],"HPLC-MS":[111],"Target-Decoy":[113],"validations.":[114],"rMSIfragment":[115,147],"applies":[116],"multiple":[118],"sample":[120],"types":[121],"experimental":[123],"setups.":[124],"Finally,":[125],"demonstrate":[127],"overlooking":[129],"fragments":[131],"increases":[132],"number":[134,155],"incorrect":[136],"annotations.":[137],"Annotation":[138],"workflows":[139],"should":[140],"consider":[141],"tools":[144],"such":[145],"increase":[149],"annotation":[150],"confidence":[151],"reduce":[153],"false":[157],"positives.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":4}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
