{"id":"https://openalex.org/W4380087918","doi":"https://doi.org/10.1186/s13321-023-00728-6","title":"ProfhEX: AI-based platform for small molecules liability profiling","display_name":"ProfhEX: AI-based platform for small molecules liability profiling","publication_year":2023,"publication_date":"2023-06-09","ids":{"openalex":"https://openalex.org/W4380087918","doi":"https://doi.org/10.1186/s13321-023-00728-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/37296454"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-023-00728-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00728-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00728-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00728-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060276392","display_name":"Filippo Lunghini","orcid":"https://orcid.org/0000-0002-4625-6736"},"institutions":[{"id":"https://openalex.org/I4210140932","display_name":"Domp\u00e9 (Italy)","ror":"https://ror.org/04erezm33","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210140932"]},{"id":"https://openalex.org/I4210141307","display_name":"Farmaceutici Damor (Italy)","ror":"https://ror.org/04cd7aa36","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210141307"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Filippo Lunghini","raw_affiliation_strings":["EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy","institution_ids":["https://openalex.org/I4210141307","https://openalex.org/I4210140932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046703363","display_name":"Anna Fava","orcid":"https://orcid.org/0000-0003-0394-7438"},"institutions":[{"id":"https://openalex.org/I4210140932","display_name":"Domp\u00e9 (Italy)","ror":"https://ror.org/04erezm33","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210140932"]},{"id":"https://openalex.org/I4210141307","display_name":"Farmaceutici Damor (Italy)","ror":"https://ror.org/04cd7aa36","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210141307"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Anna Fava","raw_affiliation_strings":["EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy","institution_ids":["https://openalex.org/I4210141307","https://openalex.org/I4210140932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074028971","display_name":"Vincenzo Pisapia","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vincenzo Pisapia","raw_affiliation_strings":["Professional Service Department, SAS Institute, Via Darwin 20/22, 20143, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Professional Service Department, SAS Institute, Via Darwin 20/22, 20143, Milan, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112285909","display_name":"Francesco Sacco","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Francesco Sacco","raw_affiliation_strings":["Professional Service Department, SAS Institute, Via Darwin 20/22, 20143, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Professional Service Department, SAS Institute, Via Darwin 20/22, 20143, Milan, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067915298","display_name":"Daniela Iaconis","orcid":"https://orcid.org/0000-0002-1052-6634"},"institutions":[{"id":"https://openalex.org/I4210141307","display_name":"Farmaceutici Damor (Italy)","ror":"https://ror.org/04cd7aa36","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210141307"]},{"id":"https://openalex.org/I4210140932","display_name":"Domp\u00e9 (Italy)","ror":"https://ror.org/04erezm33","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210140932"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniela Iaconis","raw_affiliation_strings":["EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy","institution_ids":["https://openalex.org/I4210141307","https://openalex.org/I4210140932"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032283822","display_name":"Andrea R. Beccari","orcid":"https://orcid.org/0000-0001-6830-2695"},"institutions":[{"id":"https://openalex.org/I4210141307","display_name":"Farmaceutici Damor (Italy)","ror":"https://ror.org/04cd7aa36","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210141307"]},{"id":"https://openalex.org/I4210140932","display_name":"Domp\u00e9 (Italy)","ror":"https://ror.org/04erezm33","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210140932"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Rosario Beccari","raw_affiliation_strings":["EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy. andrea.beccari@dompe.com","EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy. andrea.beccari@dompe.com","institution_ids":["https://openalex.org/I4210140932","https://openalex.org/I4210141307"]},{"raw_affiliation_string":"EXSCALATE, Domp\u00e9 Farmaceutici SpA, Via Tommaso de Amicis 95, 80123, Naples, Italy","institution_ids":["https://openalex.org/I4210141307","https://openalex.org/I4210140932"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5060276392"],"corresponding_institution_ids":["https://openalex.org/I4210140932","https://openalex.org/I4210141307"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.7078,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.91708985,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"60","last_page":"60"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9659000039100647,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12023","display_name":"Cholinesterase and Neurodegenerative Diseases","score":0.9470999836921692,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.579892098903656},{"id":"https://openalex.org/keywords/gradient-boosting","display_name":"Gradient boosting","score":0.5082333087921143},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4597300589084625},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4369903802871704},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4246743321418762},{"id":"https://openalex.org/keywords/champion","display_name":"Champion","score":0.41906023025512695},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.38641542196273804},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3762519955635071},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21834611892700195}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.579892098903656},{"id":"https://openalex.org/C70153297","wikidata":"https://www.wikidata.org/wiki/Q5591907","display_name":"Gradient boosting","level":3,"score":0.5082333087921143},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4597300589084625},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4369903802871704},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4246743321418762},{"id":"https://openalex.org/C2780465443","wikidata":"https://www.wikidata.org/wiki/Q852061","display_name":"Champion","level":2,"score":0.41906023025512695},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.38641542196273804},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3762519955635071},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21834611892700195},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-023-00728-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00728-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00728-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:37296454","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37296454","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10251600","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10251600","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10251600/pdf/13321_2023_Article_728.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:8d1390f14ad24dd29c6388f0449c66e6","is_oa":true,"landing_page_url":"https://doaj.org/article/8d1390f14ad24dd29c6388f0449c66e6","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-17 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-023-00728-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00728-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00728-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4380087918.pdf"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W63802623","https://openalex.org/W213139077","https://openalex.org/W1480151146","https://openalex.org/W1530167222","https://openalex.org/W1678356000","https://openalex.org/W1869829652","https://openalex.org/W1967105697","https://openalex.org/W1968319881","https://openalex.org/W1979900513","https://openalex.org/W1989797821","https://openalex.org/W1992041755","https://openalex.org/W2004635453","https://openalex.org/W2018453465","https://openalex.org/W2021714618","https://openalex.org/W2057069496","https://openalex.org/W2061080229","https://openalex.org/W2070789802","https://openalex.org/W2074681440","https://openalex.org/W2077610956","https://openalex.org/W2092053124","https://openalex.org/W2094400680","https://openalex.org/W2099071242","https://openalex.org/W2122025333","https://openalex.org/W2147670638","https://openalex.org/W2155802578","https://openalex.org/W2156079849","https://openalex.org/W2206840988","https://openalex.org/W2346292862","https://openalex.org/W2362265365","https://openalex.org/W2394108223","https://openalex.org/W2402506318","https://openalex.org/W2410227830","https://openalex.org/W2588796969","https://openalex.org/W2611756741","https://openalex.org/W2740946158","https://openalex.org/W2765502351","https://openalex.org/W2779266190","https://openalex.org/W2790282224","https://openalex.org/W2806547269","https://openalex.org/W2884740260","https://openalex.org/W2900090807","https://openalex.org/W2905261310","https://openalex.org/W2909055772","https://openalex.org/W2911964244","https://openalex.org/W2914563121","https://openalex.org/W2940278604","https://openalex.org/W2947531489","https://openalex.org/W2956229469","https://openalex.org/W2976332861","https://openalex.org/W2980583144","https://openalex.org/W3004841653","https://openalex.org/W3006781192","https://openalex.org/W3017834715","https://openalex.org/W3031826057","https://openalex.org/W3040330187","https://openalex.org/W3041306552","https://openalex.org/W3097145107","https://openalex.org/W3097920362","https://openalex.org/W3112376646","https://openalex.org/W3112951420","https://openalex.org/W3130746194","https://openalex.org/W3153418506","https://openalex.org/W3171798071","https://openalex.org/W3194368700","https://openalex.org/W3200485832","https://openalex.org/W3215034190","https://openalex.org/W4220904544","https://openalex.org/W4248881967","https://openalex.org/W4280627812","https://openalex.org/W4291036516"],"related_works":["https://openalex.org/W4386690025","https://openalex.org/W3208169454","https://openalex.org/W4322710485","https://openalex.org/W4315777889","https://openalex.org/W3008856725","https://openalex.org/W3201348321","https://openalex.org/W4294691859","https://openalex.org/W3159988495","https://openalex.org/W4313488044","https://openalex.org/W4226232432"],"abstract_inverted_index":{"determination":[0],"coefficient":[1],"of":[2,13,16,32,35,39,42,53,69],"0.68":[3],"(SD":[4,15,34,41],"=":[5],"0.1)":[6],"and":[7,37,72,80],"a":[8],"root":[9],"mean":[10],"squared":[11],"error":[12],"0.69":[14],"0.08).":[17],"All":[18],"liability":[19,58],"groups":[20],"showed":[21],"good":[22],"hit-detection":[23],"power":[24,52],"with":[25,66],"an":[26],"average":[27],"enrichment":[28],"factor":[29],"at":[30,87],"5%":[31],"13.1":[33],"4.5)":[36],"AUC":[38],"0.92":[40],"0.05).":[43],"Benchmarking":[44],"against":[45],"already":[46],"existing":[47],"tools":[48],"demonstrated":[49],"the":[50,67,88],"predictive":[51],"ProfhEX":[54,83],"models":[55],"for":[56],"large-scale":[57],"profiling.":[59],"This":[60],"platform":[61],"will":[62],"be":[63],"further":[64],"expanded":[65],"inclusion":[68],"new":[70],"targets":[71],"through":[73],"complementary":[74],"modelling":[75],"approaches,":[76],"such":[77],"as":[78],"structure":[79],"pharmacophore-based":[81],"models.":[82],"is":[84],"freely":[85],"accessible":[86],"following":[89],"address:":[90],"https://profhex.exscalate.eu/":[91],".":[92]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
