{"id":"https://openalex.org/W4379875520","doi":"https://doi.org/10.1186/s13321-023-00719-7","title":"Adaptive language model training for molecular design","display_name":"Adaptive language model training for molecular design","publication_year":2023,"publication_date":"2023-06-08","ids":{"openalex":"https://openalex.org/W4379875520","doi":"https://doi.org/10.1186/s13321-023-00719-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/37291633"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-023-00719-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00719-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00719-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00719-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019868556","display_name":"Andrew E. Blanchard","orcid":"https://orcid.org/0000-0001-7330-9656"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew E. Blanchard","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032222900","display_name":"Debsindhu Bhowmik","orcid":"https://orcid.org/0000-0001-7770-9091"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Debsindhu Bhowmik","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA. bhowmikd@ornl.gov","Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA. bhowmikd@ornl.gov","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057253596","display_name":"Zachary Fox","orcid":"https://orcid.org/0000-0003-0138-2867"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zachary Fox","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018744978","display_name":"John Gounley","orcid":"https://orcid.org/0000-0001-8424-4982"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Gounley","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023856625","display_name":"Jens Gl\u00e4ser","orcid":"https://orcid.org/0000-0003-1852-3849"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jens Glaser","raw_affiliation_strings":["National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002592084","display_name":"Belinda S. Akpa","orcid":"https://orcid.org/0000-0002-6098-7113"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]},{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Belinda S. Akpa","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","Chemical & Biomolecular Engineering, University of Tennessee, Knoxville, TN, 37996, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Chemical & Biomolecular Engineering, University of Tennessee, Knoxville, TN, 37996, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072715140","display_name":"Stephan Irle","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephan Irle","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5019868556"],"corresponding_institution_ids":["https://openalex.org/I1289243028"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":1.0219,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.72105153,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"15","issue":"1","first_page":"59","last_page":"59"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9592000246047974,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7441631555557251},{"id":"https://openalex.org/keywords/training","display_name":"Training (meteorology)","score":0.5011780261993408},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.4135604202747345},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34021756052970886},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33876466751098633},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33013707399368286}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7441631555557251},{"id":"https://openalex.org/C2777211547","wikidata":"https://www.wikidata.org/wiki/Q17141490","display_name":"Training (meteorology)","level":2,"score":0.5011780261993408},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4135604202747345},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34021756052970886},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33876466751098633},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33013707399368286},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C153294291","wikidata":"https://www.wikidata.org/wiki/Q25261","display_name":"Meteorology","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13321-023-00719-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00719-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00719-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:37291633","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37291633","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10249556","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10249556","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10249556/pdf/13321_2023_Article_719.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:657d1801ec52459d824b47834dcb2517","is_oa":true,"landing_page_url":"https://doaj.org/article/657d1801ec52459d824b47834dcb2517","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-12 (2023)","raw_type":"article"},{"id":"pmh:oai:osti.gov:1984313","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1984313","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1987804","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1987804","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1186/s13321-023-00719-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00719-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00719-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1489425746","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1528409558","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3049477530","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4423657506","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G4957472368","display_name":null,"funder_award_id":". DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5726405315","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6486853205","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G675320460","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G6864165199","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6911681599","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4379875520.pdf"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1592238003","https://openalex.org/W1975147762","https://openalex.org/W1998693213","https://openalex.org/W2027478081","https://openalex.org/W2034549041","https://openalex.org/W2066810295","https://openalex.org/W2080635178","https://openalex.org/W2107160601","https://openalex.org/W2110791536","https://openalex.org/W2121879602","https://openalex.org/W2160592148","https://openalex.org/W2406943157","https://openalex.org/W2461470610","https://openalex.org/W2529996553","https://openalex.org/W2578240541","https://openalex.org/W2774185825","https://openalex.org/W2790808809","https://openalex.org/W2900694120","https://openalex.org/W2907657781","https://openalex.org/W2914542247","https://openalex.org/W2916581152","https://openalex.org/W2939314313","https://openalex.org/W2953128081","https://openalex.org/W2953302413","https://openalex.org/W2959938226","https://openalex.org/W2973114758","https://openalex.org/W2979826702","https://openalex.org/W2989615256","https://openalex.org/W2998571806","https://openalex.org/W3006889321","https://openalex.org/W3008443627","https://openalex.org/W3014476516","https://openalex.org/W3098269892","https://openalex.org/W3113182646","https://openalex.org/W3114291043","https://openalex.org/W3116865743","https://openalex.org/W3129831491","https://openalex.org/W3133325765","https://openalex.org/W3158755582","https://openalex.org/W3165630607","https://openalex.org/W3167905129","https://openalex.org/W3209056694","https://openalex.org/W3214740101","https://openalex.org/W4205410305","https://openalex.org/W4210592951","https://openalex.org/W4221074165","https://openalex.org/W4281619372","https://openalex.org/W4303478269","https://openalex.org/W6601211009"],"related_works":["https://openalex.org/W230091440","https://openalex.org/W2233261550","https://openalex.org/W2810751659","https://openalex.org/W258997015","https://openalex.org/W2997094352","https://openalex.org/W3216976533","https://openalex.org/W100620283","https://openalex.org/W2495260952","https://openalex.org/W4366179611","https://openalex.org/W3204019825"],"abstract_inverted_index":{"The":[0,103],"vast":[1],"size":[2],"of":[3,15,124,149,163,175,183,232],"chemical":[4,40,63],"space":[5],"necessitates":[6],"computational":[7],"approaches":[8],"to":[9,18,31,38,49,59,84,110,143,224,235],"automate":[10,50],"and":[11,68,101,196],"accelerate":[12],"the":[13,51,113,117,136,140,147,152,161,164,173,176,181,213,225,230],"design":[14,237],"molecular":[16,236],"sequences":[17,64],"guide":[19],"experimental":[20],"efforts":[21],"for":[22,88,98,127,155,188],"drug":[23],"discovery.":[24],"Genetic":[25],"algorithms":[26],"provide":[27],"a":[28,107,206,217],"useful":[29],"framework":[30],"incrementally":[32],"generate":[33,111],"molecules":[34,125,150,189],"by":[35,54,172,186],"applying":[36],"mutations":[37],"known":[39],"structures.":[41],"Recently,":[42],"masked":[43],"language":[44,79,118,141,233],"models":[45,80,234],"have":[46],"been":[47],"applied":[48],"mutation":[52],"process":[53],"leveraging":[55],"large":[56],"compound":[57],"libraries":[58],"learn":[60],"commonly":[61],"occurring":[62],"(i.e.,":[65,71],"using":[66,72],"tokenization)":[67],"predict":[69],"rearrangements":[70],"mask":[73],"prediction).":[74],"Here,":[75],"we":[76,159],"consider":[77],"how":[78],"can":[81],"be":[82],"adapted":[83],"improve":[85],"molecule":[86],"generation":[87,96,123],"different":[89,95],"optimization":[90,222],"tasks.":[91,238],"We":[92,179],"use":[93,162,174],"two":[94],"strategies":[97],"comparison,":[99],"fixed":[100,104,165,226],"adaptive.":[102],"strategy":[105,115,138,166,215],"uses":[106],"pre-trained":[108,227],"model":[109,119,142],"mutations;":[112],"adaptive":[114,137,177,184,214],"trains":[116],"on":[120],"each":[121],"new":[122],"selected":[126],"target":[128],"properties":[129],"during":[130,167],"optimization.":[131],"Our":[132,209],"results":[133,210],"show":[134,211],"that":[135,190,212],"allows":[139],"more":[144],"closely":[145],"fit":[146],"distribution":[148],"in":[151,220],"population.":[153],"Therefore,":[154],"enhanced":[156],"fitness":[157,221],"optimization,":[158],"suggest":[160],"an":[168],"initial":[169],"phase":[170],"followed":[171],"strategy.":[178],"demonstrate":[180],"impact":[182],"training":[185],"searching":[187],"optimize":[191],"both":[192],"heuristic":[193],"metrics,":[194],"drug-likeness":[195],"synthesizability,":[197],"as":[198,200],"well":[199],"predicted":[201],"protein":[202],"binding":[203],"affinity":[204],"from":[205],"surrogate":[207],"model.":[208],"provides":[216],"significant":[218],"improvement":[219],"compared":[223],"model,":[228],"empowering":[229],"application":[231]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-04T08:30:34.212998","created_date":"2025-10-10T00:00:00"}
