{"id":"https://openalex.org/W4362470869","doi":"https://doi.org/10.1186/s13321-023-00717-9","title":"qHTSWaterfall: 3-dimensional visualization software for quantitative high-throughput screening (qHTS) data","display_name":"qHTSWaterfall: 3-dimensional visualization software for quantitative high-throughput screening (qHTS) data","publication_year":2023,"publication_date":"2023-03-31","ids":{"openalex":"https://openalex.org/W4362470869","doi":"https://doi.org/10.1186/s13321-023-00717-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/37004072"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-023-00717-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00717-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00717-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00717-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008612949","display_name":"Bryan Queme","orcid":"https://orcid.org/0000-0003-1509-9982"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bryan Queme","raw_affiliation_strings":["National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA"],"raw_orcid":"https://orcid.org/0000-0003-1509-9982","affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045061072","display_name":"John Braisted","orcid":"https://orcid.org/0000-0001-8093-6463"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John C. Braisted","raw_affiliation_strings":["National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA. john.braisted@nih.gov","National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA"],"raw_orcid":"https://orcid.org/0000-0001-8093-6463","affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA. john.braisted@nih.gov","institution_ids":["https://openalex.org/I4210148682"]},{"raw_affiliation_string":"National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041259468","display_name":"Patricia Dranchak","orcid":"https://orcid.org/0000-0002-1349-4885"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patricia Dranchak","raw_affiliation_strings":["National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA"],"raw_orcid":"https://orcid.org/0000-0002-1349-4885","affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091208881","display_name":"James Inglese","orcid":"https://orcid.org/0000-0002-7332-5717"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210090236","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090236"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Inglese","raw_affiliation_strings":["National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA","National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA"],"raw_orcid":"https://orcid.org/0000-0002-7332-5717","affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA","institution_ids":["https://openalex.org/I4210090236","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008612949"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210148682"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":1.3959,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.85061857,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"15","issue":"1","first_page":"39","last_page":"39"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7672296762466431},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6267818212509155},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6125813126564026},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5347867012023926},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5329820513725281},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42504510283470154},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09387797117233276}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7672296762466431},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6267818212509155},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6125813126564026},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5347867012023926},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5329820513725281},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42504510283470154},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09387797117233276},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-023-00717-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00717-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00717-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:37004072","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37004072","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10064508","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10064508","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10064508/pdf/13321_2023_Article_717.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:131bbbe7cf7941a3a69d754748a634b1","is_oa":true,"landing_page_url":"https://doaj.org/article/131bbbe7cf7941a3a69d754748a634b1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-7 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-023-00717-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-023-00717-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-023-00717-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Clean water and sanitation","score":0.8700000047683716,"id":"https://metadata.un.org/sdg/6"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4362470869.pdf"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1567829975","https://openalex.org/W1852306145","https://openalex.org/W1975858576","https://openalex.org/W2000212055","https://openalex.org/W2031250847","https://openalex.org/W2031441006","https://openalex.org/W2036922942","https://openalex.org/W2065915163","https://openalex.org/W2081659180","https://openalex.org/W2104830962","https://openalex.org/W2108236403","https://openalex.org/W2128879247","https://openalex.org/W2152975479","https://openalex.org/W2157866033","https://openalex.org/W2159266419","https://openalex.org/W2177317049","https://openalex.org/W2217028767","https://openalex.org/W2302637886","https://openalex.org/W2316765580","https://openalex.org/W2316947309","https://openalex.org/W2564604922","https://openalex.org/W2767527967","https://openalex.org/W2940964825","https://openalex.org/W2944924455","https://openalex.org/W2954587554","https://openalex.org/W2958829060","https://openalex.org/W3029788278","https://openalex.org/W3166027173","https://openalex.org/W4388251328"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2081517010","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W2294221496"],"abstract_inverted_index":{"High":[0],"throughput":[1],"screening":[2],"(HTS)":[3],"is":[4,146],"widely":[5],"used":[6],"in":[7],"drug":[8],"discovery":[9],"and":[10,15,79,94,145,153],"chemical":[11,26],"biology":[12],"to":[13,102,114,123,141],"identify":[14],"characterize":[16],"agents":[17],"having":[18],"pharmacologic":[19],"properties":[20],"often":[21],"by":[22,65],"evaluation":[23],"of":[24,44,69,82,118],"large":[25],"libraries.":[27],"Standard":[28],"HTS":[29,57],"data":[30,59,72,98,121],"can":[31,137],"be":[32,138],"simply":[33],"plotted":[34],"as":[35,41,92,148],"an":[36,150,154],"x-y":[37],"graph":[38],"usually":[39],"represented":[40,64],"%":[42],"activity":[43],"a":[45,49,61,105,111,125],"compound":[46,53,77],"tested":[47],"at":[48],"single":[50,106],"concentration":[51],"vs":[52],"ID,":[54],"whereas":[55],"quantitative":[56],"(qHTS)":[58],"incorporates":[60],"third":[62],"axis":[63],"concentration.":[66],"By":[67],"virtue":[68],"the":[70,76,80,88,115],"additional":[71],"points":[73],"arising":[74],"from":[75],"titration":[78],"incorporation":[81],"logistic":[83],"fit":[84],"parameters":[85],"that":[86],"define":[87],"concentration-response":[89],"curve,":[90],"such":[91],"EC50":[93],"Hill":[95],"slope,":[96],"qHTS":[97,120,130],"has":[99],"been":[100],"challenging":[101],"display":[103],"on":[104],"graph.":[107],"Here":[108],"we":[109,128],"provide":[110],"flexible":[112],"solution":[113],"rapid":[116],"plotting":[117],"complete":[119],"sets":[122],"produce":[124],"3-axis":[126,143],"plot":[127],"call":[129],"Waterfall":[131],"Plots.":[132],"The":[133],"software":[134],"described":[135],"here":[136],"generally":[139],"applied":[140],"any":[142],"dataset":[144],"available":[147],"both":[149],"R":[151,155],"package":[152],"shiny":[156],"application.":[157]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-01-23T23:20:30.427331","created_date":"2025-10-10T00:00:00"}
