{"id":"https://openalex.org/W4313648381","doi":"https://doi.org/10.1186/s13321-022-00673-w","title":"XSMILES: interactive visualization for molecules, SMILES and XAI attribution scores","display_name":"XSMILES: interactive visualization for molecules, SMILES and XAI attribution scores","publication_year":2023,"publication_date":"2023-01-06","ids":{"openalex":"https://openalex.org/W4313648381","doi":"https://doi.org/10.1186/s13321-022-00673-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/36609340"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-022-00673-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00673-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00673-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00673-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090985150","display_name":"Henry Heberle","orcid":"https://orcid.org/0000-0003-1964-268X"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Henry Heberle","raw_affiliation_strings":["Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany. henry.heberle@bayer.com","Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany. henry.heberle@bayer.com","institution_ids":["https://openalex.org/I67348948"]},{"raw_affiliation_string":"Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003047553","display_name":"Linlin Zhao","orcid":"https://orcid.org/0000-0001-8086-2812"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Linlin Zhao","raw_affiliation_strings":["Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100692564","display_name":"Sebastian Schmidt","orcid":"https://orcid.org/0000-0002-1364-5436"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Schmidt","raw_affiliation_strings":["Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101415135","display_name":"Thomas Wolf","orcid":"https://orcid.org/0000-0001-9627-5567"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Wolf","raw_affiliation_strings":["Division Crop Science, Bayer AG, 65926, Frankfurt, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division Crop Science, Bayer AG, 65926, Frankfurt, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102872139","display_name":"Julian Heinrich","orcid":"https://orcid.org/0000-0002-5353-3914"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julian Heinrich","raw_affiliation_strings":["Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division Crop Science, Bayer AG, 40789, Monheim am Rhein, Germany","institution_ids":["https://openalex.org/I67348948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5090985150"],"corresponding_institution_ids":["https://openalex.org/I67348948"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.7903,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.91290426,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"15","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.8116000294685364,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.8116000294685364,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.07129999995231628,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.02630000002682209,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7066542506217957},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6548802852630615},{"id":"https://openalex.org/keywords/attribution","display_name":"Attribution","score":0.5649689435958862},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.5411834120750427},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5373088121414185},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.46573296189308167},{"id":"https://openalex.org/keywords/atom","display_name":"Atom (system on chip)","score":0.4379359483718872},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36272162199020386},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3241305351257324},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.1402432918548584},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09144142270088196},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.0805560052394867}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7066542506217957},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6548802852630615},{"id":"https://openalex.org/C143299363","wikidata":"https://www.wikidata.org/wiki/Q900584","display_name":"Attribution","level":2,"score":0.5649689435958862},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.5411834120750427},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5373088121414185},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.46573296189308167},{"id":"https://openalex.org/C58312451","wikidata":"https://www.wikidata.org/wiki/Q4817200","display_name":"Atom (system on chip)","level":2,"score":0.4379359483718872},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36272162199020386},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3241305351257324},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.1402432918548584},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09144142270088196},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0805560052394867},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-022-00673-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00673-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00673-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:36609340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36609340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9817292","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9817292","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9817292/pdf/13321_2022_Article_673.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:435d143738d947fe9c2e4ef33c7a7d02","is_oa":true,"landing_page_url":"https://doaj.org/article/435d143738d947fe9c2e4ef33c7a7d02","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-12 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-022-00673-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00673-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00673-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307771","display_name":"Bayer","ror":"https://ror.org/04hmn8g73"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4313648381.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1975147762","https://openalex.org/W2087563523","https://openalex.org/W2168480393","https://openalex.org/W2760085125","https://openalex.org/W2779144909","https://openalex.org/W2898227265","https://openalex.org/W2901476322","https://openalex.org/W2937307539","https://openalex.org/W2973049920","https://openalex.org/W3009321976","https://openalex.org/W3011694901","https://openalex.org/W3030978062","https://openalex.org/W3045928028","https://openalex.org/W3093687066","https://openalex.org/W3112890400","https://openalex.org/W3131648425","https://openalex.org/W4221114454","https://openalex.org/W4225252134","https://openalex.org/W4311090691"],"related_works":["https://openalex.org/W2035546108","https://openalex.org/W2376361520","https://openalex.org/W2133328864","https://openalex.org/W2323536476","https://openalex.org/W2093949997","https://openalex.org/W2570200690","https://openalex.org/W2389726244","https://openalex.org/W3030478661","https://openalex.org/W2128730003","https://openalex.org/W2104624653"],"abstract_inverted_index":{"BACKGROUND:":[0],"Explainable":[1],"artificial":[2,160],"intelligence":[3,161],"(XAI)":[4],"methods":[5],"have":[6],"shown":[7],"increasing":[8],"applicability":[9],"in":[10],"chemistry.":[11],"In":[12],"this":[13,32],"context,":[14],"visualization":[15,155,249],"techniques":[16,36,138],"can":[17,61,171,211,226,255,264],"highlight":[18],"regions":[19],"of":[20,43,49,55,106,143,168,175,188,244],"a":[21,28,50,56,67,79,126,189,195,200,242],"molecule":[22,68,127,191],"to":[23,121,139,157,178,229,246,250,268,279],"reveal":[24],"their":[25,94,147,231,273],"influence":[26,105],"over":[27,110],"predicted":[29,112],"property.":[30],"For":[31,77],"purpose,":[33],"some":[34],"XAI":[35],"calculate":[37],"attribution":[38],"scores":[39,70,124,163],"associated":[40,145],"with":[41,47,58,146,194,219],"tokens":[42,75,182],"SMILES":[44,73,201,209],"strings":[45,210],"or":[46],"atoms":[48],"molecule.":[51],"While":[52],"an":[53,59,104,153],"association":[54],"score":[57,176],"atom":[60,109,179],"be":[62,212,256],"directly":[63],"visually":[64],"represented":[65],"on":[66,97,125,186],"diagram,":[69],"computed":[71],"for":[72,114,137,208],"non-atom":[74,84,181],"cannot.":[76],"instance,":[78],"substring":[80],"[N+]":[81],"contains":[82],"3":[83],"tokens,":[85],"i.e.,":[86],"[,":[87],"[Formula:":[88],"see":[89],"text],":[90],"and":[91,93,164,180,183,214,234,253,271,282],"],":[92],"attributions,":[95],"depending":[96],"the":[98,107,111,123,135,141,166,248],"model,":[99],"are":[100],"not":[101,119],"necessarily":[102],"revealing":[103],"nitrogen":[108],"property;":[113],"that":[115,198],"reason,":[116],"it":[117,254,277],"is":[118,132],"possible":[120],"represent":[122],"diagram.":[128],"Moreover,":[129],"SMILES's":[130],"notation":[131],"complex,":[133],"foregrounding":[134],"need":[136],"facilitate":[140],"analysis":[142],"explanations":[144],"tokens.":[148],"RESULTS:":[149],"We":[150,203,261],"propose":[151],"XSMILES,":[152],"interactive":[154,286],"technique,":[156],"explore":[158],"explainable":[159],"attributions":[162,206,284],"support":[165,265],"interpretation":[167],"SMILES.":[169],"Users":[170],"input":[172],"any":[173],"type":[174],"attributed":[177],"visualize":[184],"them":[185],"top":[187],"2D":[190],"diagram":[192],"coordinated":[193],"bar":[196],"chart":[197],"represents":[199],"string.":[202],"demonstrate":[204],"how":[205],"calculated":[207],"evaluated":[213],"better":[215],"interpreted":[216],"through":[217,285],"interactivity":[218],"two":[220],"use":[221,227],"cases.":[222],"CONCLUSIONS:":[223],"Data":[224],"scientists":[225,267],"XSMILES":[228,263],"understand":[230],"models'":[232],"behavior":[233],"compare":[235,283],"multiple":[236],"modeling":[237],"approaches.":[238],"The":[239],"tool":[240],"provides":[241],"set":[243],"parameters":[245],"adapt":[247],"users'":[251],"needs":[252],"integrated":[257],"into":[258],"different":[259],"platforms.":[260],"believe":[262],"data":[266],"develop,":[269],"improve,":[270],"communicate":[272],"models":[274],"by":[275],"making":[276],"easier":[278],"identify":[280],"patterns":[281],"exploratory":[287],"visualization.":[288]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":13}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
