{"id":"https://openalex.org/W4311587203","doi":"https://doi.org/10.1186/s13321-022-00665-w","title":"ReMODE: a deep learning-based web server for target-specific drug design","display_name":"ReMODE: a deep learning-based web server for target-specific drug design","publication_year":2022,"publication_date":"2022-12-12","ids":{"openalex":"https://openalex.org/W4311587203","doi":"https://doi.org/10.1186/s13321-022-00665-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/36510307"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-022-00665-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00665-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00665-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00665-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101919658","display_name":"Mingyang Wang","orcid":"https://orcid.org/0000-0003-0525-6120"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingyang Wang","raw_affiliation_strings":["CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, People's Republic of China","Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, People's Republic of China","institution_ids":[]},{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101848725","display_name":"Jike Wang","orcid":"https://orcid.org/0000-0002-8118-8572"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jike Wang","raw_affiliation_strings":["CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, People's Republic of China","Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, People's Republic of China","institution_ids":[]},{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023457285","display_name":"Gaoqi Weng","orcid":"https://orcid.org/0000-0001-8476-7548"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gaoqi Weng","raw_affiliation_strings":["CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, People's Republic of China","Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, People's Republic of China","institution_ids":[]},{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100624617","display_name":"Yu Kang","orcid":"https://orcid.org/0000-0002-0999-8802"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Kang","raw_affiliation_strings":["Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072525278","display_name":"Peichen Pan","orcid":"https://orcid.org/0000-0003-1152-7759"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peichen Pan","raw_affiliation_strings":["Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380698","display_name":"Dan Li","orcid":"https://orcid.org/0000-0002-1264-5952"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Li","raw_affiliation_strings":["Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040753258","display_name":"Yafeng Deng","orcid":"https://orcid.org/0000-0003-2416-6913"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yafeng Deng","raw_affiliation_strings":["CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CarbonSilicon AI Technology Co., Ltd, Hangzhou, 310018, Zhejiang, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100688144","display_name":"Honglin Li","orcid":"https://orcid.org/0000-0003-2270-1900"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Honglin Li","raw_affiliation_strings":["Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science & Technology, Shanghai, 200237, People's Republic of China. hlli@ecust.edu.cn","Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science & Technology, Shanghai, 200237, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science & Technology, Shanghai, 200237, People's Republic of China. hlli@ecust.edu.cn","institution_ids":["https://openalex.org/I143593769"]},{"raw_affiliation_string":"Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science & Technology, Shanghai, 200237, People's Republic of China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008663435","display_name":"Chang\u2010Yu Hsieh","orcid":"https://orcid.org/0000-0002-6242-4218"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chang-Yu Hsieh","raw_affiliation_strings":["Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China. kimhsieh@tencent.com","Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China. kimhsieh@tencent.com","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028525523","display_name":"Tingjun Hou","orcid":"https://orcid.org/0000-0001-7227-2580"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingjun Hou","raw_affiliation_strings":["Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China. tingjunhou@zju.edu.cn","Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China. tingjunhou@zju.edu.cn","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences and Cancer Center, Zhejiang University, Hangzhou, 310058, Zhejiang, People's Republic of China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100688144"],"corresponding_institution_ids":["https://openalex.org/I143593769"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":0.7958,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.74900815,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"14","issue":"1","first_page":"84","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7942255735397339},{"id":"https://openalex.org/keywords/pharmacophore","display_name":"Pharmacophore","score":0.7413854002952576},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6121400594711304},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.49742987751960754},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.49386125802993774},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.41910967230796814},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35661885142326355},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2658064067363739},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2568463683128357},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19881319999694824}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7942255735397339},{"id":"https://openalex.org/C56173144","wikidata":"https://www.wikidata.org/wiki/Q1539893","display_name":"Pharmacophore","level":2,"score":0.7413854002952576},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6121400594711304},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.49742987751960754},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.49386125802993774},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.41910967230796814},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35661885142326355},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2658064067363739},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2568463683128357},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19881319999694824},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-022-00665-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00665-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00665-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:36510307","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36510307","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:db1f876706704fe9b5f75e3374bfbc46","is_oa":true,"landing_page_url":"https://doaj.org/article/db1f876706704fe9b5f75e3374bfbc46","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 14, Iss 1, Pp 1-11 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9743675","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9743675","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-022-00665-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00665-w","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00665-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G227839669","display_name":null,"funder_award_id":"81973281","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7903508730","display_name":null,"funder_award_id":"22220102001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8590540938","display_name":null,"funder_award_id":"2021YFF1201400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4311587203.pdf","grobid_xml":"https://content.openalex.org/works/W4311587203.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W1582109070","https://openalex.org/W1592238003","https://openalex.org/W1757990252","https://openalex.org/W1938449115","https://openalex.org/W1964421276","https://openalex.org/W1971106435","https://openalex.org/W1973652931","https://openalex.org/W1981276685","https://openalex.org/W1986176168","https://openalex.org/W1991286793","https://openalex.org/W1998344725","https://openalex.org/W2000860171","https://openalex.org/W2009299989","https://openalex.org/W2011647105","https://openalex.org/W2018621056","https://openalex.org/W2027482274","https://openalex.org/W2035231834","https://openalex.org/W2050458179","https://openalex.org/W2052933929","https://openalex.org/W2067300585","https://openalex.org/W2077597215","https://openalex.org/W2078521274","https://openalex.org/W2130479394","https://openalex.org/W2143419487","https://openalex.org/W2146984355","https://openalex.org/W2155478691","https://openalex.org/W2204695023","https://openalex.org/W2208203352","https://openalex.org/W2214409633","https://openalex.org/W2273267066","https://openalex.org/W2529996553","https://openalex.org/W2578240541","https://openalex.org/W2736137960","https://openalex.org/W2765224015","https://openalex.org/W2883583109","https://openalex.org/W2914635984","https://openalex.org/W2963275094","https://openalex.org/W2969980075","https://openalex.org/W2970534831","https://openalex.org/W2971690404","https://openalex.org/W2985931096","https://openalex.org/W3009999522","https://openalex.org/W3011286504","https://openalex.org/W3021338900","https://openalex.org/W3028169623","https://openalex.org/W3042826782","https://openalex.org/W3047089863","https://openalex.org/W3048079539","https://openalex.org/W3098269892","https://openalex.org/W3121082297","https://openalex.org/W3126326305","https://openalex.org/W3168436232","https://openalex.org/W3175975129","https://openalex.org/W3195161349","https://openalex.org/W3200806939","https://openalex.org/W3201249640","https://openalex.org/W3205590463","https://openalex.org/W3207373390","https://openalex.org/W3209764902","https://openalex.org/W3209790821","https://openalex.org/W4205478771","https://openalex.org/W4224322651","https://openalex.org/W4230189600","https://openalex.org/W4283075725","https://openalex.org/W6610423178"],"related_works":["https://openalex.org/W42225299","https://openalex.org/W2943414817","https://openalex.org/W2073081213","https://openalex.org/W2802169163","https://openalex.org/W4400461470","https://openalex.org/W4402084195","https://openalex.org/W1964657534","https://openalex.org/W2070692310","https://openalex.org/W4376484878","https://openalex.org/W2611425558"],"abstract_inverted_index":{"Deep":[0],"learning":[1,5],"(DL)":[2],"and":[3,12,42,49,131,161],"machine":[4],"contribute":[6],"significantly":[7],"to":[8,28,54,59,86,89,156],"basic":[9],"biology":[10],"research":[11],"drug":[13,34,60,92,148,178],"discovery":[14],"in":[15,22,31],"the":[16,43,97,102,106,113,122,128,158,165,171],"past":[17],"few":[18],"decades.":[19],"Recent":[20],"advances":[21],"DL-based":[23],"generative":[24],"models":[25],"have":[26],"led":[27],"superior":[29],"developments":[30],"de":[32],"novo":[33],"design.":[35,61,149],"However,":[36],"data":[37,40],"availability,":[38],"deep":[39],"processing,":[41],"lack":[44],"of":[45,127,164],"user-friendly":[46],"DL":[47,57,75],"tools":[48],"interfaces":[50],"make":[51],"it":[52],"difficult":[53],"apply":[55],"these":[56],"techniques":[58],"We":[62,168],"hereby":[63],"present":[64],"ReMODE":[65,98,151,172,180],"(Receptor-based":[66],"MOlecular":[67],"DEsign),":[68],"a":[69,140,143],"new":[70],"web":[71],"server":[72,114,152,173],"based":[73],"on":[74],"algorithm":[76],"for":[77,146,177],"target-specific":[78,103],"ligand":[79],"design,":[80],"which":[81],"integrates":[82],"different":[83],"functional":[84],"modules":[85],"enable":[87],"users":[88,119,136,155],"develop":[90],"customizable":[91],"design":[93],"tasks.":[94],"As":[95],"designed,":[96],"sever":[99],"can":[100,120,137],"construct":[101],"tasks":[104],"toward":[105],"protein":[107],"targets":[108],"selected":[109],"by":[110],"users.":[111],"Meanwhile,":[112],"also":[115,138,153],"provides":[116],"some":[117],"extensions:":[118],"optimize":[121,157],"drug-likeness":[123],"or":[124],"synthetic":[125],"accessibility":[126],"generated":[129,166],"molecules,":[130],"control":[132],"other":[133],"physicochemical":[134],"properties;":[135],"choose":[139],"sub-structure/scaffold":[141],"as":[142],"starting":[144],"point":[145],"fragment-based":[147],"The":[150],"enables":[154],"pharmacophore":[159],"matching":[160],"docking":[162],"conformations":[163],"molecules.":[167],"believe":[169],"that":[170],"will":[174],"benefit":[175],"researchers":[176],"discovery.":[179],"is":[181],"publicly":[182],"available":[183],"at":[184],"http://cadd.zju.edu.cn/relation/remode/":[185],".":[186]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
