{"id":"https://openalex.org/W4308589011","doi":"https://doi.org/10.1186/s13321-022-00647-y","title":"Development of machine learning classifiers to predict compound activity on prostate cancer cell lines","display_name":"Development of machine learning classifiers to predict compound activity on prostate cancer cell lines","publication_year":2022,"publication_date":"2022-11-08","ids":{"openalex":"https://openalex.org/W4308589011","doi":"https://doi.org/10.1186/s13321-022-00647-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/36348374"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-022-00647-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00647-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00647-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00647-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039106280","display_name":"Davide Bonanni","orcid":"https://orcid.org/0000-0002-8832-0492"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Davide Bonanni","raw_affiliation_strings":["Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy","institution_ids":["https://openalex.org/I122346577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014912634","display_name":"Luca Pinzi","orcid":"https://orcid.org/0000-0001-5572-2121"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Pinzi","raw_affiliation_strings":["Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy","institution_ids":["https://openalex.org/I122346577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066566738","display_name":"Giulio Rastelli","orcid":"https://orcid.org/0000-0002-2474-0607"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulio Rastelli","raw_affiliation_strings":["Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy. giulio.rastelli@unimore.it","Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy. giulio.rastelli@unimore.it","institution_ids":[]},{"raw_affiliation_string":"Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy","institution_ids":["https://openalex.org/I122346577"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5039106280"],"corresponding_institution_ids":["https://openalex.org/I122346577"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":2250,"currency":"EUR","value_usd":2426},"fwci":1.056,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.80042918,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"14","issue":"1","first_page":"77","last_page":"77"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9674999713897705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.7086542248725891},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6987228989601135},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6866532564163208},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6376616358757019},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6305100321769714},{"id":"https://openalex.org/keywords/homogeneous","display_name":"Homogeneous","score":0.540057897567749},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5227532386779785},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4959042966365814},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3792409896850586},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1586991250514984},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1401437520980835},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0857439935207367},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.0784587562084198}],"concepts":[{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.7086542248725891},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6987228989601135},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6866532564163208},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6376616358757019},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6305100321769714},{"id":"https://openalex.org/C66882249","wikidata":"https://www.wikidata.org/wiki/Q169336","display_name":"Homogeneous","level":2,"score":0.540057897567749},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5227532386779785},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4959042966365814},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3792409896850586},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1586991250514984},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1401437520980835},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0857439935207367},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0784587562084198},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-022-00647-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00647-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00647-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:36348374","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36348374","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:92da56affb65416f86ac1edf1c2c6641","is_oa":true,"landing_page_url":"https://doaj.org/article/92da56affb65416f86ac1edf1c2c6641","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 14, Iss 1, Pp 1-16 (2022)","raw_type":"article"},{"id":"pmh:oai:iris.unimore.it:11380/1337095","is_oa":true,"landing_page_url":"https://hdl.handle.net/11380/1337095","pdf_url":null,"source":{"id":"https://openalex.org/S4306400718","display_name":"IRIS UNIMORE (University of Modena and Reggio Emilia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122346577","host_organization_name":"University of Modena and Reggio Emilia","host_organization_lineage":["https://openalex.org/I122346577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9641853","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9641853","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-022-00647-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00647-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00647-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G6065546726","display_name":null,"funder_award_id":"IG 2019","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G7276570906","display_name":null,"funder_award_id":"23635","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G7794062290","display_name":null,"funder_award_id":"Modena","funder_id":"https://openalex.org/F4320311022","funder_display_name":"Universit\u00e0 Degli Studi di Modena e Reggio Emila"}],"funders":[{"id":"https://openalex.org/F4320311022","display_name":"Universit\u00e0 Degli Studi di Modena e Reggio Emila","ror":"https://ror.org/02d4c4y02"},{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"},{"id":"https://openalex.org/F4320324143","display_name":"Fondazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4308589011.pdf","grobid_xml":"https://content.openalex.org/works/W4308589011.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W19552341","https://openalex.org/W1419228847","https://openalex.org/W1517224081","https://openalex.org/W1976778538","https://openalex.org/W1986240377","https://openalex.org/W1991820123","https://openalex.org/W1993943341","https://openalex.org/W2005958584","https://openalex.org/W2008549629","https://openalex.org/W2011483361","https://openalex.org/W2013614403","https://openalex.org/W2024304133","https://openalex.org/W2025819860","https://openalex.org/W2050488296","https://openalex.org/W2054739860","https://openalex.org/W2054814252","https://openalex.org/W2056096102","https://openalex.org/W2060768581","https://openalex.org/W2075004958","https://openalex.org/W2084313681","https://openalex.org/W2096541451","https://openalex.org/W2096729078","https://openalex.org/W2096980612","https://openalex.org/W2117525803","https://openalex.org/W2130676469","https://openalex.org/W2137330819","https://openalex.org/W2171450549","https://openalex.org/W2271727451","https://openalex.org/W2399806230","https://openalex.org/W2405684830","https://openalex.org/W2496856755","https://openalex.org/W2522738587","https://openalex.org/W2557547609","https://openalex.org/W2595548001","https://openalex.org/W2729684734","https://openalex.org/W2802703412","https://openalex.org/W2807415283","https://openalex.org/W2809759621","https://openalex.org/W2883463089","https://openalex.org/W2890411695","https://openalex.org/W2896859410","https://openalex.org/W2900090807","https://openalex.org/W2905734619","https://openalex.org/W2922760757","https://openalex.org/W2940242941","https://openalex.org/W3000409525","https://openalex.org/W3009870584","https://openalex.org/W3037348089","https://openalex.org/W3112376646","https://openalex.org/W3121488116","https://openalex.org/W3134968392","https://openalex.org/W3170594626","https://openalex.org/W3193489634","https://openalex.org/W3197243128","https://openalex.org/W3204569098","https://openalex.org/W3205083309","https://openalex.org/W3210331473","https://openalex.org/W3216591159","https://openalex.org/W4206841660","https://openalex.org/W4226068197","https://openalex.org/W4247989331"],"related_works":["https://openalex.org/W3129816939","https://openalex.org/W2912862995","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W4407713039","https://openalex.org/W1521239975"],"abstract_inverted_index":{"Prostate":[0],"cancer":[1,8,84,220],"is":[2,46],"the":[3,20,24,27,40,74,79,91,94,106,112,133,143,167,185,190,193,211,214],"most":[4,31],"common":[5],"type":[6],"of":[7,26,42,56,76,93,103,108,114,136,145,169,184,216],"in":[9,29,90,162,192,210],"men.":[10],"The":[11,87],"disease":[12,28],"presents":[13],"good":[14],"survival":[15],"rates":[16],"if":[17],"treated":[18],"at":[19],"early":[21],"stages.":[22],"However,":[23],"evolution":[25],"its":[30],"aggressive":[32],"variant":[33],"remains":[34],"without":[35],"effective":[36,44,218],"therapeutic":[37],"answers.":[38],"Therefore,":[39],"identification":[41],"novel":[43],"therapeutics":[45],"urgently":[47],"needed.":[48],"On":[49],"these":[50],"premises,":[51],"we":[52],"developed":[53],"a":[54,101],"series":[55,102],"machine":[57,124],"learning":[58,125],"models,":[59],"based":[60,165],"on":[61,166],"compounds":[62],"with":[63,151],"reported":[64,188],"highly":[65],"homogeneous":[66],"cell-based":[67],"antiproliferative":[68,221],"assay":[69],"data,":[70],"able":[71],"to":[72,100,111,116,131],"predict":[73],"activity":[75,137,186,202],"ligands":[77,191],"towards":[78],"PC-3":[80,157,170],"and":[81,119,139,158,171,203],"DU-145":[82,159,172],"prostate":[83,219],"cell":[85],"lines.":[86],"data":[88,173],"employed":[89],"development":[92],"computational":[95],"models":[96,164],"was":[97],"finely-tuned":[98],"according":[99],"thresholds":[104,138],"for":[105,142,156,189,213],"classification":[107,144],"active/inactive":[109],"compounds,":[110,147],"number":[113],"features":[115],"be":[117,208],"implemented,":[118],"by":[120],"using":[121],"10":[122],"different":[123],"algorithms.":[126],"Models'":[127],"evaluation":[128],"allowed":[129],"us":[130],"identify":[132],"best":[134],"combination":[135,168],"ML":[140],"algorithms":[141],"active":[146],"achieving":[148],"prediction":[149],"performances":[150],"MCC":[152],"values":[153],"above":[154],"0.60":[155],"cells.":[160],"Moreover,":[161],"silico":[163],"were":[174,196],"also":[175],"developed,":[176],"demonstrating":[177],"excellent":[178],"precision":[179],"performances.":[180],"Finally,":[181],"an":[182],"analysis":[183],"annotations":[187],"curated":[194],"datasets":[195],"conducted,":[197],"suggesting":[198],"associations":[199],"between":[200],"cellular":[201],"biological":[204],"targets":[205],"that":[206],"might":[207],"explored":[209],"future":[212],"design":[215],"more":[217],"agents.":[222]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
