{"id":"https://openalex.org/W4293095771","doi":"https://doi.org/10.1186/s13321-022-00637-0","title":"FPocketWeb: protein pocket hunting in a web browser","display_name":"FPocketWeb: protein pocket hunting in a web browser","publication_year":2022,"publication_date":"2022-08-25","ids":{"openalex":"https://openalex.org/W4293095771","doi":"https://doi.org/10.1186/s13321-022-00637-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/36008829"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-022-00637-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00637-0","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00637-0","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00637-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004703890","display_name":"Yuri Kochnev","orcid":"https://orcid.org/0000-0001-6605-6603"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuri Kochnev","raw_affiliation_strings":["Department of Biological Sciences, University of Pittsburgh, 15260, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Pittsburgh, 15260, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084976210","display_name":"Jacob D. Durrant","orcid":"https://orcid.org/0000-0002-5808-4097"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob D. Durrant","raw_affiliation_strings":["Department of Biological Sciences, University of Pittsburgh, 15260, Pittsburgh, PA, USA. durrantj@pitt.edu","Department of Biological Sciences, University of Pittsburgh, 15260, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Pittsburgh, 15260, Pittsburgh, PA, USA. durrantj@pitt.edu","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Biological Sciences, University of Pittsburgh, 15260, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":4.1622,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.94981242,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"14","issue":"1","first_page":"58","last_page":"58"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11241","display_name":"Advanced Malware Detection Techniques","score":0.9638000130653381,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11241","display_name":"Advanced Malware Detection Techniques","score":0.9638000130653381,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.639668345451355},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6155481338500977},{"id":"https://openalex.org/keywords/web-browser","display_name":"Web browser","score":0.5922357439994812},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.26350075006484985}],"concepts":[{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.639668345451355},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6155481338500977},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.5922357439994812},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.26350075006484985}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-022-00637-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00637-0","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00637-0","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:36008829","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36008829","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:4e03c9939c97451482fcf390c440e969","is_oa":true,"landing_page_url":"https://doaj.org/article/4e03c9939c97451482fcf390c440e969","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 14, Iss 1, Pp 1-7 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9414105","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9414105","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-022-00637-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00637-0","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00637-0","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5}],"awards":[{"id":"https://openalex.org/G1612612465","display_name":null,"funder_award_id":"R01GM132353","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5481392483","display_name":null,"funder_award_id":"R01GM132353","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293095771.pdf","grobid_xml":"https://content.openalex.org/works/W4293095771.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W12201287","https://openalex.org/W1907992362","https://openalex.org/W1964529071","https://openalex.org/W1988044361","https://openalex.org/W1990907572","https://openalex.org/W2029667189","https://openalex.org/W2043580883","https://openalex.org/W2047267041","https://openalex.org/W2047709322","https://openalex.org/W2062884696","https://openalex.org/W2077558978","https://openalex.org/W2079050252","https://openalex.org/W2093694964","https://openalex.org/W2107361996","https://openalex.org/W2107841008","https://openalex.org/W2112845321","https://openalex.org/W2126754172","https://openalex.org/W2140047797","https://openalex.org/W2155267446","https://openalex.org/W2159524042","https://openalex.org/W2164088236","https://openalex.org/W2169678694","https://openalex.org/W2265102996","https://openalex.org/W2346816855","https://openalex.org/W2530847795","https://openalex.org/W2779060209","https://openalex.org/W3036674808","https://openalex.org/W3164973443","https://openalex.org/W4210919704","https://openalex.org/W4221088956","https://openalex.org/W4293094227"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4254303646","https://openalex.org/W1540003828","https://openalex.org/W2287572233","https://openalex.org/W2443963150","https://openalex.org/W2489547187","https://openalex.org/W1533121303","https://openalex.org/W3014218496","https://openalex.org/W569963976","https://openalex.org/W569541443"],"abstract_inverted_index":{"Detecting":[0],"macromolecular":[1],"(e.g.,":[2],"protein)":[3],"cavities":[4],"where":[5],"small":[6],"molecules":[7],"bind":[8],"is":[9,37],"an":[10,54],"early":[11],"step":[12],"in":[13,44,108],"computer-aided":[14],"drug":[15],"discovery.":[16],"Multiple":[17],"pocket-detection":[18],"algorithms":[19],"have":[20],"been":[21],"developed":[22],"over":[23],"the":[24,104,120,133],"past":[25],"several":[26],"decades.":[27],"Among":[28],"them,":[29],"fpocket,":[30],"created":[31],"by":[32],"Schmidtke":[33],"and":[34,52],"Le":[35],"Guilloux,":[36],"particularly":[38],"popular.":[39],"Like":[40],"many":[41],"programs":[42],"used":[43],"computational-biology":[45],"research,":[46],"fpocket":[47,72],"requires":[48,81],"users":[49,82],"to":[50,83,89],"download":[51],"install":[53],"executable":[55,106],"file.":[56],"That":[57],"file":[58],"must":[59],"also":[60],"be":[61,138],"run":[62],"via":[63],"a":[64,90,109,126],"command-line":[65],"interface,":[66],"further":[67],"complicating":[68],"use.":[69],"An":[70],"existing":[71],"server":[73],"application":[74],"effectively":[75],"addresses":[76],"these":[77],"challenges,":[78],"but":[79],"it":[80],"upload":[84],"their":[85],"possibly":[86],"proprietary":[87],"structures":[88],"third-party":[91],"server.":[92,128],"The":[93,115],"FPocketWeb":[94,135],"web":[95,110],"app":[96,136],"builds":[97],"on":[98,119,125],"this":[99],"prior":[100],"work.":[101],"It":[102],"runs":[103],"fpocket3":[105],"entirely":[107],"browser":[111],"without":[112],"requiring":[113],"installation.":[114],"pocket-finding":[116],"calculations":[117],"occur":[118],"user's":[121],"computer":[122],"rather":[123],"than":[124],"remote":[127],"A":[129],"working":[130],"version":[131],"of":[132,141],"open-source":[134],"can":[137],"accessed":[139],"free":[140],"charge":[142],"from":[143],"http://durrantlab.com/fpocketweb":[144],".":[145]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
