{"id":"https://openalex.org/W4281807419","doi":"https://doi.org/10.1186/s13321-022-00609-4","title":"RanDepict: Random chemical structure depiction generator","display_name":"RanDepict: Random chemical structure depiction generator","publication_year":2022,"publication_date":"2022-06-06","ids":{"openalex":"https://openalex.org/W4281807419","doi":"https://doi.org/10.1186/s13321-022-00609-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/35668480"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-022-00609-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00609-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00609-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00609-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002477485","display_name":"Henning Otto Brinkhaus","orcid":"https://orcid.org/0000-0002-6664-2183"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Henning Otto Brinkhaus","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017832889","display_name":"Kohulan Rajan","orcid":"https://orcid.org/0000-0003-1066-7792"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kohulan Rajan","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089744377","display_name":"Achim Zielesny","orcid":"https://orcid.org/0000-0003-0722-4229"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Achim Zielesny","raw_affiliation_strings":["Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, August-Schmidt-Ring 10, D-45665, Recklinghausen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, August-Schmidt-Ring 10, D-45665, Recklinghausen, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040194803","display_name":"Christoph Steinbeck","orcid":"https://orcid.org/0000-0001-6966-0814"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christoph Steinbeck","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany. christoph.steinbeck@uni-jena.de","Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany. christoph.steinbeck@uni-jena.de","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5040194803"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1662,"currency":"EUR","value_usd":1792},"fwci":2.4352,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.90156102,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"14","issue":"1","first_page":"31","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.977400004863739,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/depiction","display_name":"Depiction","score":0.700634241104126},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.606096625328064},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.6001135110855103},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.41941896080970764},{"id":"https://openalex.org/keywords/power","display_name":"Power (physics)","score":0.11150231957435608},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07004627585411072}],"concepts":[{"id":"https://openalex.org/C2779702343","wikidata":"https://www.wikidata.org/wiki/Q1166770","display_name":"Depiction","level":2,"score":0.700634241104126},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.606096625328064},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.6001135110855103},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.41941896080970764},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.11150231957435608},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07004627585411072},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-022-00609-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00609-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00609-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:35668480","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35668480","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:096de17f9e9246b2b1b5954e329407d5","is_oa":true,"landing_page_url":"https://doaj.org/article/096de17f9e9246b2b1b5954e329407d5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 14, Iss 1, Pp 1-7 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9169273","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9169273","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-022-00609-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-022-00609-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-022-00609-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309895","display_name":"Carl-Zeiss-Stiftung","ror":"https://ror.org/03ng4kg22"},{"id":"https://openalex.org/F4320313941","display_name":"Friedrich-Schiller-Universit\u00e4t Jena","ror":"https://ror.org/05qpz1x62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281807419.pdf","grobid_xml":"https://content.openalex.org/works/W4281807419.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1966456689","https://openalex.org/W2055888446","https://openalex.org/W2121317260","https://openalex.org/W2148797284","https://openalex.org/W2242464395","https://openalex.org/W2963734039","https://openalex.org/W3007750971","https://openalex.org/W3009249134","https://openalex.org/W3009875143","https://openalex.org/W3010412535","https://openalex.org/W3092396754","https://openalex.org/W3097598035","https://openalex.org/W3103383152","https://openalex.org/W3130247384","https://openalex.org/W3138074128","https://openalex.org/W3159789740","https://openalex.org/W3203895579","https://openalex.org/W4206029367"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2354497654","https://openalex.org/W1521279281","https://openalex.org/W1925626449","https://openalex.org/W1677035131","https://openalex.org/W3012686786","https://openalex.org/W4239616774","https://openalex.org/W2375460546"],"abstract_inverted_index":{"The":[0,22,98],"development":[1,201],"of":[2,18,24,38,53,58,91,94,100,109,118,149,183,202],"deep":[3,39,203],"learning-based":[4,204],"optical":[5],"chemical":[6,19,59,95,141],"structure":[7,20,60,96],"recognition":[8],"(OCSR)":[9],"systems":[10,41],"has":[11],"led":[12],"to":[13,49,129,178,197,199],"a":[14,50,86],"need":[15],"for":[16,35,88],"datasets":[17],"depictions.":[21,97],"diversity":[23,99],"the":[25,28,36,56,67,89,101,115,119,127,133,144,162,173,200],"features":[26,63,103,136,166],"in":[27,114,169],"training":[29],"data":[30],"is":[31,104,126,176],"an":[32],"important":[33],"factor":[34],"generation":[37],"learning":[40],"that":[42],"generalise":[43],"well":[44],"and":[45,79,122,131,164,172],"are":[46,64,167],"not":[47],"overfit":[48],"specific":[51],"type":[52],"input.":[54],"In":[55],"case":[57],"depictions,":[61],"these":[62],"defined":[65],"by":[66,106],"depiction":[68,112,116,152,163],"parameters":[69,113],"such":[70,137],"as":[71,138],"bond":[72],"length,":[73],"line":[74],"thickness,":[75],"label":[76],"font":[77],"style":[78],"many":[80],"others.":[81],"Here":[82],"we":[83,195],"present":[84],"RanDepict,":[85],"toolkit":[87],"creation":[90],"diverse":[92,180],"sets":[93],"image":[102,134,159],"generated":[105],"making":[107,188],"use":[108],"all":[110,184,189],"available":[111],"functionalities":[117],"CDK,":[120],"RDKit,":[121],"Indigo.":[123],"Furthermore,":[124],"there":[125],"option":[128],"enhance":[130],"augment":[132],"with":[135],"curved":[139],"arrows,":[140],"labels":[142],"around":[143],"structure,":[145],"or":[146],"other":[147],"kinds":[148],"distortions.":[150],"Using":[151],"feature":[153],"fingerprints,":[154],"RanDepict":[155],"ensures":[156],"diversely":[157],"picked":[158],"features.":[160],"Here,":[161],"augmentation":[165],"summarised":[168],"binary":[170],"vectors":[171],"MaxMin":[174],"algorithm":[175],"used":[177],"pick":[179],"samples":[181],"out":[182],"valid":[185],"options.":[186],"By":[187],"resources":[190],"described":[191],"herein":[192],"publicly":[193],"available,":[194],"hope":[196],"contribute":[198],"OCSR":[205],"systems.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
