{"id":"https://openalex.org/W3201847282","doi":"https://doi.org/10.1186/s13321-021-00555-7","title":"Synergy conformal prediction applied to large-scale bioactivity datasets and in federated learning","display_name":"Synergy conformal prediction applied to large-scale bioactivity datasets and in federated learning","publication_year":2021,"publication_date":"2021-10-02","ids":{"openalex":"https://openalex.org/W3201847282","doi":"https://doi.org/10.1186/s13321-021-00555-7","mag":"3201847282","pmid":"https://pubmed.ncbi.nlm.nih.gov/34600569"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-021-00555-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-021-00555-7","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00555-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00555-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067014994","display_name":"Ulf Norinder","orcid":"https://orcid.org/0000-0003-3107-331X"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I26437253","display_name":"\u00d6rebro University","ror":"https://ror.org/05kytsw45","country_code":"SE","type":"education","lineage":["https://openalex.org/I26437253"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I4210160701","display_name":"Kista Photonics Research Center","ror":"https://ror.org/05j59av97","country_code":"SE","type":"facility","lineage":["https://openalex.org/I4210160701"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ulf Norinder","raw_affiliation_strings":["Department of Computer and Systems Sciences, Stockholm University, Box 7003, 164 07, Kista, Sweden","Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Box 591, SE-75124, Uppsala, Sweden","MTM Research Centre, School of Science and Technology, \u00d6rebro University, 70182, \u00d6rebro, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Systems Sciences, Stockholm University, Box 7003, 164 07, Kista, Sweden","institution_ids":["https://openalex.org/I4210160701","https://openalex.org/I161593684"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Box 591, SE-75124, Uppsala, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]},{"raw_affiliation_string":"MTM Research Centre, School of Science and Technology, \u00d6rebro University, 70182, \u00d6rebro, Sweden","institution_ids":["https://openalex.org/I26437253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046663348","display_name":"Ola Spjuth","orcid":"https://orcid.org/0000-0002-8083-2864"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ola Spjuth","raw_affiliation_strings":["Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Box 591, SE-75124, Uppsala, Sweden. Ola.Spjuth@farmbio.uu.se","Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Box 591, SE-75124, Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Box 591, SE-75124, Uppsala, Sweden. Ola.Spjuth@farmbio.uu.se","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Box 591, SE-75124, Uppsala, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087233240","display_name":"Fredrik Svensson","orcid":"https://orcid.org/0000-0002-5556-8133"},"institutions":[{"id":"https://openalex.org/I4210132925","display_name":"Alzheimer\u2019s Research UK","ror":"https://ror.org/02ymzm013","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210132925"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Fredrik Svensson","raw_affiliation_strings":["Alzheimer's Research UK UCL Drug Discovery Institute, University College London, The Cruciform Building, Gower Street, London, WC1E 6BT, UK. f.svensson@ucl.ac.uk","Alzheimer\u2019s Research UK UCL Drug Discovery Institute, University College London, The Cruciform Building, Gower Street, London, WC1E 6BT, UK"],"affiliations":[{"raw_affiliation_string":"Alzheimer's Research UK UCL Drug Discovery Institute, University College London, The Cruciform Building, Gower Street, London, WC1E 6BT, UK. f.svensson@ucl.ac.uk","institution_ids":["https://openalex.org/I45129253","https://openalex.org/I4210132925"]},{"raw_affiliation_string":"Alzheimer\u2019s Research UK UCL Drug Discovery Institute, University College London, The Cruciform Building, Gower Street, London, WC1E 6BT, UK","institution_ids":["https://openalex.org/I4210132925","https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5087233240"],"corresponding_institution_ids":["https://openalex.org/I4210132925","https://openalex.org/I45129253"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.4542,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.68604854,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"13","issue":"1","first_page":"77","last_page":"77"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9488999843597412,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conformal-map","display_name":"Conformal map","score":0.8322477340698242},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.7567018270492554},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6495540738105774},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4859122335910797},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.44483137130737305},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4308679699897766},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3706551194190979},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1520603895187378}],"concepts":[{"id":"https://openalex.org/C98214594","wikidata":"https://www.wikidata.org/wiki/Q850275","display_name":"Conformal map","level":2,"score":0.8322477340698242},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.7567018270492554},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6495540738105774},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4859122335910797},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44483137130737305},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4308679699897766},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3706551194190979},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1520603895187378},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/s13321-021-00555-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-021-00555-7","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00555-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:34600569","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34600569","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:DiVA.org:uu-457563","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-457563","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"},{"id":"pmh:oai:doaj.org/article:ee0f00aed94d46caa89b6f53dcc606e0","is_oa":true,"landing_page_url":"https://doaj.org/article/ee0f00aed94d46caa89b6f53dcc606e0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 13, Iss 1, Pp 1-11 (2021)","raw_type":"article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10136395","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10136395/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Journal of Cheminformatics , 13  (1)    , Article 77. (2021)      ","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:7381403","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8487527","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8487527","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8487527","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-021-00555-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-021-00555-7","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00555-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.7400000095367432,"display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3201847282.pdf","grobid_xml":"https://content.openalex.org/works/W3201847282.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W2360098","https://openalex.org/W1521746852","https://openalex.org/W1553101044","https://openalex.org/W1786598644","https://openalex.org/W1988037271","https://openalex.org/W1994249991","https://openalex.org/W2009842403","https://openalex.org/W2096560421","https://openalex.org/W2101234009","https://openalex.org/W2267190997","https://openalex.org/W2504742770","https://openalex.org/W2541855169","https://openalex.org/W2568027568","https://openalex.org/W2587942483","https://openalex.org/W2626276175","https://openalex.org/W2791769165","https://openalex.org/W2802404464","https://openalex.org/W2896072522","https://openalex.org/W2909055772","https://openalex.org/W2920582597","https://openalex.org/W2927554728","https://openalex.org/W2967829699","https://openalex.org/W3045674654","https://openalex.org/W3092893947","https://openalex.org/W3093152954","https://openalex.org/W3095491482","https://openalex.org/W3107587236","https://openalex.org/W3133308163","https://openalex.org/W4206320562"],"related_works":["https://openalex.org/W4205140848","https://openalex.org/W2068663075","https://openalex.org/W2978678743","https://openalex.org/W2797837731","https://openalex.org/W4393677513","https://openalex.org/W4390832911","https://openalex.org/W829257147","https://openalex.org/W4385302116","https://openalex.org/W3081389670","https://openalex.org/W2150344375"],"abstract_inverted_index":{"Confidence":[0],"predictors":[1,59,71,89,147],"can":[2,14,98],"deliver":[3],"predictions":[4],"with":[5,96,100],"the":[6,42,52,66,127,153],"associated":[7],"confidence":[8],"required":[9],"for":[10,60,72],"decision":[11],"making":[12],"and":[13,22,64],"play":[15],"an":[16],"important":[17],"role":[18],"in":[19,80,112,116],"drug":[20],"discovery":[21],"toxicity":[23],"predictions.":[24],"In":[25],"this":[26],"work":[27],"we":[28,142],"investigate":[29],"a":[30,117,149],"recently":[31],"introduced":[32],"version":[33],"of":[34,57,68],"conformal":[35,38,58,70,88,102,130,146,154],"prediction,":[36,39],"synergy":[37,69,87,129,145],"focusing":[40],"on":[41,91,139],"predictive":[43],"performance":[44,53],"when":[45],"applied":[46],"to":[47,54,125,134,152],"bioactivity":[48],"data.":[49],"We":[50],"compare":[51],"other":[55,101],"variants":[56],"multiple":[61],"partitioned":[62],"datasets":[63],"demonstrate":[65],"utility":[67],"federated":[73,118],"learning":[74],"where":[75,120],"data":[76,93],"cannot":[77],"be":[78],"pooled":[79],"one":[81],"location.":[82],"Our":[83],"results":[84,111],"show":[85],"that":[86,144],"based":[90],"training":[92,108],"randomly":[94],"sampled":[95],"replacement":[97],"compete":[99],"setups,":[103],"while":[104],"using":[105],"completely":[106],"separate":[107],"sets":[109],"often":[110],"worse":[113],"performance.":[114],"However,":[115],"setup":[119],"no":[121],"method":[122],"has":[123],"access":[124],"all":[126],"data,":[128],"prediction":[131,155],"is":[132],"shown":[133],"give":[135],"promising":[136],"results.":[137],"Based":[138],"our":[140],"study,":[141],"conclude":[143],"are":[148],"valuable":[150],"addition":[151],"toolbox.":[156]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
