{"id":"https://openalex.org/W3201477029","doi":"https://doi.org/10.1186/s13321-021-00552-w","title":"DTi2Vec: Drug\u2013target interaction prediction using network embedding and ensemble learning","display_name":"DTi2Vec: Drug\u2013target interaction prediction using network embedding and ensemble learning","publication_year":2021,"publication_date":"2021-09-22","ids":{"openalex":"https://openalex.org/W3201477029","doi":"https://doi.org/10.1186/s13321-021-00552-w","mag":"3201477029","pmid":"https://pubmed.ncbi.nlm.nih.gov/34551818"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-021-00552-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-021-00552-w","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00552-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00552-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006656166","display_name":"Maha A. Thafar","orcid":"https://orcid.org/0000-0003-0539-7361"},"institutions":[{"id":"https://openalex.org/I179331831","display_name":"Taif University","ror":"https://ror.org/014g1a453","country_code":"SA","type":"education","lineage":["https://openalex.org/I179331831"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Maha A. Thafar","raw_affiliation_strings":["College of Computers and Information Technology, Computer Science Department, Taif University, Taif, Kingdom of Saudi Arabia","Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computers and Information Technology, Computer Science Department, Taif University, Taif, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I179331831"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067922507","display_name":"Rawan S. Olayan","orcid":"https://orcid.org/0000-0001-9148-2129"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rawan S. Olayan","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086374617","display_name":"Somayah Albaradei","orcid":"https://orcid.org/0000-0003-4317-2358"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Somayah Albaradei","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia","Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055569646","display_name":"Vladimir B. Baji\u0107","orcid":"https://orcid.org/0000-0001-5435-4750"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Vladimir B. Bajic","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016213975","display_name":"Takashi Gojobori","orcid":"https://orcid.org/0000-0001-7850-1743"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Takashi Gojobori","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085529612","display_name":"Magbubah Essack","orcid":"https://orcid.org/0000-0003-2709-5356"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Magbubah Essack","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia. magbubah.essack@kaust.edu.sa","Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0003-2709-5356","affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia. magbubah.essack@kaust.edu.sa","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xin Gao","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia. xin.gao@kaust.edu.sa","Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia. xin.gao@kaust.edu.sa","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center, Computer (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5006656166"],"corresponding_institution_ids":["https://openalex.org/I179331831","https://openalex.org/I71920554"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":7.457,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.97677672,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"71","last_page":"71"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8406574726104736},{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.7835788726806641},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6561312675476074},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6529544591903687},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.612223207950592},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6048521399497986},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4884189963340759},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.4462401866912842},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4286484122276306},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.4236384928226471},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.08255317807197571}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8406574726104736},{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.7835788726806641},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6561312675476074},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6529544591903687},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.612223207950592},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6048521399497986},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4884189963340759},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.4462401866912842},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4286484122276306},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.4236384928226471},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.08255317807197571},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/s13321-021-00552-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-021-00552-w","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00552-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:34551818","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34551818","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:repository.kaust.edu.sa:10754/671958","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/671958","pdf_url":"http://hdl.handle.net/10754/671958","source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:df451b2b7c4e484fab56585276a745fd","is_oa":true,"landing_page_url":"https://doaj.org/article/df451b2b7c4e484fab56585276a745fd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 13, Iss 1, Pp 1-18 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:7349442","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8459562","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:mouseion.jax.org:stfb2021-1263","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2021/268","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2021","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8459562","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8459562","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-021-00552-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-021-00552-w","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00552-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1615897265","display_name":null,"funder_award_id":"BAS/1/1606-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G1869317358","display_name":null,"funder_award_id":"BAS/1/1624-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2185879301","display_name":null,"funder_award_id":"FCC/1/1976-26-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2453236630","display_name":null,"funder_award_id":"BAS/1/1059-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2559975844","display_name":null,"funder_award_id":"FCC/1/1976-17-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G260918946","display_name":null,"funder_award_id":"BAS/1/1059-01-01, BAS/1/1624-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2683216053","display_name":null,"funder_award_id":"FCC/1/1976-20-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G3995181199","display_name":null,"funder_award_id":"BAS/1/1624-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8722125687","display_name":null,"funder_award_id":"FCC/1/1976-26","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3201477029.pdf","grobid_xml":"https://content.openalex.org/works/W3201477029.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W46659105","https://openalex.org/W87312633","https://openalex.org/W1627275720","https://openalex.org/W1678356000","https://openalex.org/W1970148391","https://openalex.org/W1971106435","https://openalex.org/W1976526581","https://openalex.org/W1982545168","https://openalex.org/W1987219048","https://openalex.org/W2009313526","https://openalex.org/W2020639753","https://openalex.org/W2029348196","https://openalex.org/W2033906815","https://openalex.org/W2046011778","https://openalex.org/W2063016658","https://openalex.org/W2087007556","https://openalex.org/W2108069034","https://openalex.org/W2108103746","https://openalex.org/W2130253098","https://openalex.org/W2139736926","https://openalex.org/W2142709876","https://openalex.org/W2144000913","https://openalex.org/W2145561180","https://openalex.org/W2149302140","https://openalex.org/W2153579005","https://openalex.org/W2153838454","https://openalex.org/W2154851992","https://openalex.org/W2165674132","https://openalex.org/W2167212630","https://openalex.org/W2177317049","https://openalex.org/W2256553158","https://openalex.org/W2259538443","https://openalex.org/W2295598076","https://openalex.org/W2302413701","https://openalex.org/W2521200999","https://openalex.org/W2522920646","https://openalex.org/W2558999090","https://openalex.org/W2559588208","https://openalex.org/W2562531153","https://openalex.org/W2568556896","https://openalex.org/W2576544908","https://openalex.org/W2586724023","https://openalex.org/W2604272474","https://openalex.org/W2612835976","https://openalex.org/W2739636023","https://openalex.org/W2753953057","https://openalex.org/W2767891136","https://openalex.org/W2770261575","https://openalex.org/W2793951981","https://openalex.org/W2795214545","https://openalex.org/W2888273069","https://openalex.org/W2896646632","https://openalex.org/W2899210162","https://openalex.org/W2899788782","https://openalex.org/W2905215896","https://openalex.org/W2911932738","https://openalex.org/W2915583118","https://openalex.org/W2915806464","https://openalex.org/W2935632020","https://openalex.org/W2946853220","https://openalex.org/W2962756421","https://openalex.org/W2963722686","https://openalex.org/W2966787092","https://openalex.org/W2977707586","https://openalex.org/W2982552606","https://openalex.org/W2989848927","https://openalex.org/W2999554466","https://openalex.org/W3003038853","https://openalex.org/W3011171625","https://openalex.org/W3026298573","https://openalex.org/W3037299379","https://openalex.org/W3039465695","https://openalex.org/W3044334750","https://openalex.org/W3102476541","https://openalex.org/W3104097132","https://openalex.org/W3131901903"],"related_works":["https://openalex.org/W2365158734","https://openalex.org/W2009313526","https://openalex.org/W2465211533","https://openalex.org/W2157969515","https://openalex.org/W129624489","https://openalex.org/W4387804095","https://openalex.org/W2767891136","https://openalex.org/W2137052779","https://openalex.org/W2176533785","https://openalex.org/W2170146596"],"abstract_inverted_index":{"Drug-target":[0],"interaction":[1],"(DTI)":[2],"prediction":[3,45,84,105,157,182,211],"is":[4,58,201],"a":[5,32,115,176,202,222],"crucial":[6],"step":[7],"in":[8,154,180,184,218],"drug":[9,142,224],"discovery":[10],"and":[11,60,79,125,134,143,168,197,216],"repositioning":[12,225],"as":[13],"it":[14,136],"reduces":[15],"experimental":[16],"validation":[17],"costs":[18],"if":[19],"done":[20],"right.":[21],"Thus,":[22,86],"developing":[23],"in-silico":[24],"methods":[25],"to":[26,159],"predict":[27],"potential":[28],"DTI":[29,210],"has":[30,61],"become":[31],"competitive":[33],"research":[34],"niche,":[35],"with":[36,97,102],"one":[37],"of":[38,186],"its":[39,152],"main":[40],"focuses":[41],"being":[42,214],"improving":[43],"the":[44,66,131,146,181,190],"accuracy.":[46,85],"Using":[47],"machine":[48],"learning":[49,89,124,127],"(ML)":[50],"models":[51],"for":[52,140],"this":[53],"task,":[54],"specifically":[55],"network-based":[56,87,162],"approaches,":[57],"effective":[59,205],"shown":[62],"great":[63],"advantages":[64],"over":[65],"other":[67,80],"computational":[68],"methods.":[69],"However,":[70],"ML":[71,99],"model":[72],"development":[73],"involves":[74],"upstream":[75],"hand-crafted":[76],"feature":[77,94],"extraction":[78,95],"processes":[81],"that":[82,91,207],"impact":[83],"representation":[88,123],"techniques":[90],"provide":[92],"automated":[93],"combined":[96],"traditional":[98],"classifiers":[100],"dealing":[101],"downstream":[103],"link":[104,156],"tasks":[106],"may":[107],"be":[108],"better-suited":[109],"paradigms.":[110],"Here,":[111],"we":[112],"present":[113],"such":[114],"method,":[116],"DTi2Vec,":[117],"which":[118],"identifies":[119],"DTIs":[120,193],"using":[121,145,164,194],"network":[122],"ensemble":[126],"techniques.":[128],"DTi2Vec":[129,150,174,200],"constructs":[130],"heterogeneous":[132],"network,":[133],"then":[135],"automatically":[137],"generates":[138],"features":[139],"each":[141],"target":[144],"nodes":[147],"embedding":[148],"technique.":[149],"demonstrated":[151],"ability":[153],"drug-target":[155],"compared":[158],"several":[160,195],"state-of-the-art":[161],"methods,":[163],"four":[165],"benchmark":[166],"datasets":[167],"large-scale":[169],"data":[170],"compiled":[171],"from":[172],"DrugBank.":[173],"showed":[175],"statistically":[177],"significant":[178],"increase":[179],"performances":[183],"terms":[185],"AUPR.":[187],"We":[188],"verified":[189],"\"novel\"":[191],"predicted":[192],"databases":[196],"scientific":[198],"literature.":[199],"simple":[203],"yet":[204],"method":[206],"provides":[208],"high":[209],"performance":[212],"while":[213],"scalable":[215],"efficient":[217],"computation,":[219],"translating":[220],"into":[221],"powerful":[223],"tool.":[226]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":12}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
