{"id":"https://openalex.org/W3120715532","doi":"https://doi.org/10.1186/s13321-020-00477-w","title":"patRoon: open source software platform for environmental mass spectrometry based non-target screening","display_name":"patRoon: open source software platform for environmental mass spectrometry based non-target screening","publication_year":2021,"publication_date":"2021-01-06","ids":{"openalex":"https://openalex.org/W3120715532","doi":"https://doi.org/10.1186/s13321-020-00477-w","mag":"3120715532","pmid":"https://pubmed.ncbi.nlm.nih.gov/33407901"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-020-00477-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00477-w","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-020-00477-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-020-00477-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057165415","display_name":"Rick Helmus","orcid":"https://orcid.org/0000-0001-9401-3133"},"institutions":[{"id":"https://openalex.org/I4210096541","display_name":"Institute for Biodiversity","ror":"https://ror.org/01n8ggb71","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210096541"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["DE","NL"],"is_corresponding":true,"raw_author_name":"Rick Helmus","raw_affiliation_strings":["Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands. r.helmus@uva.nl","Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-9401-3133","affiliations":[{"raw_affiliation_string":"Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands. r.helmus@uva.nl","institution_ids":["https://openalex.org/I4210096541","https://openalex.org/I887064364"]},{"raw_affiliation_string":"Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052120353","display_name":"Thomas L. ter Laak","orcid":"https://orcid.org/0000-0002-6182-6004"},"institutions":[{"id":"https://openalex.org/I4210139073","display_name":"KWR Water Research Institute","ror":"https://ror.org/04f1mvy95","country_code":"NL","type":"other","lineage":["https://openalex.org/I4210139073"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Thomas L. ter Laak","raw_affiliation_strings":["Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands","KWR Water Research Institute, Chemical Water Quality and Health, P.O. Box 1072, 3430 BB, Nieuwegein, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-6182-6004","affiliations":[{"raw_affiliation_string":"Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"KWR Water Research Institute, Chemical Water Quality and Health, P.O. Box 1072, 3430 BB, Nieuwegein, The Netherlands","institution_ids":["https://openalex.org/I4210139073"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037728404","display_name":"Annemarie P. van Wezel","orcid":"https://orcid.org/0000-0002-6875-957X"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Annemarie P. van Wezel","raw_affiliation_strings":["Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-6875-957X","affiliations":[{"raw_affiliation_string":"Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002931647","display_name":"Pim de Voogt","orcid":"https://orcid.org/0000-0001-9065-9797"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Pim de Voogt","raw_affiliation_strings":["Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-9065-9797","affiliations":[{"raw_affiliation_string":"Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016319274","display_name":"Emma Schymanski","orcid":"https://orcid.org/0000-0001-6868-8145"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Emma L. Schymanski","raw_affiliation_strings":["Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4367, Belvaux, Luxembourg"],"raw_orcid":"https://orcid.org/0000-0001-6868-8145","affiliations":[{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4367, Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5057165415"],"corresponding_institution_ids":["https://openalex.org/I4210096541","https://openalex.org/I887064364"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":11.6796,"has_fulltext":true,"cited_by_count":207,"citation_normalized_percentile":{"value":0.99290499,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12073","display_name":"Isotope Analysis in Ecology","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8705832362174988},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8143657445907593},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6723344326019287},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5007960796356201},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.4630923569202423},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.44778192043304443},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4351552724838257},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.42825162410736084},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.41308659315109253},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3750859498977661},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3343737721443176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17624253034591675},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08907824754714966}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8705832362174988},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8143657445907593},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6723344326019287},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5007960796356201},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.4630923569202423},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.44778192043304443},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4351552724838257},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.42825162410736084},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.41308659315109253},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3750859498977661},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3343737721443176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17624253034591675},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08907824754714966},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":12,"locations":[{"id":"doi:10.1186/s13321-020-00477-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00477-w","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-020-00477-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:33407901","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33407901","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/05376e48-131a-43d7-a836-eb55c567d922","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/patroon-open-source-software-platform-for-environmental-mass-spectrometry-based-nontarget-screening(05376e48-131a-43d7-a836-eb55c567d922).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Helmus, R, ter Laak, T L, van Wezel, A P, de Voogt, P & Schymanski, E L 2021, 'patRoon: open source software platform for environmental mass spectrometry based non-target screening', Journal of Cheminformatics, vol. 13, 1. https://doi.org/10.1186/s13321-020-00477-w","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:6700490","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7789171","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7789171","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7789171","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:doi:10.5281/zenodo.19474773","is_oa":true,"landing_page_url":"https://github.com/rickhelmus/patRoon/tree/3.0.0","pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},{"id":"pmh:oai:dare.uva.nl:publications/05376e48-131a-43d7-a836-eb55c567d922","is_oa":false,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/patroon-open-source-software-platform-for-environmental-mass-spectrometry-based-nontarget-screening(05376e48-131a-43d7-a836-eb55c567d922).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:dare.uva.nl:publications/05376e48-131a-43d7-a836-eb55c567d922","is_oa":true,"landing_page_url":"https://hdl.handle.net/11245.1/05376e48-131a-43d7-a836-eb55c567d922","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Helmus, R, ter Laak, T L, van Wezel, A P, de Voogt, P & Schymanski, E L 2021, 'patRoon: open source software platform for environmental mass spectrometry based non-target screening', Journal of Cheminformatics, vol. 13, 1. https://doi.org/10.1186/s13321-020-00477-w","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:2e0f257c586947d096407d5cf4af08f5","is_oa":true,"landing_page_url":"https://doaj.org/article/2e0f257c586947d096407d5cf4af08f5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 13, Iss 1, Pp 1-25 (2021)","raw_type":"article"},{"id":"pmh:oai:orbilu.uni.lu:10993/44752","is_oa":true,"landing_page_url":"https://www.researchsquare.com/article/rs-36675/v2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/preprint"},{"id":"pmh:oai:orbilu.uni.lu:10993/46662","is_oa":true,"landing_page_url":"https://jcheminf.biomedcentral.com/articles/10.1186/s13321-020-00477-w","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, 13 (1), 1 (2021-01)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"doi:10.5281/zenodo.19474773","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19474773","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.1186/s13321-020-00477-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00477-w","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-020-00477-w","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Clean water and sanitation","id":"https://metadata.un.org/sdg/6","score":0.75}],"awards":[{"id":"https://openalex.org/G1731480922","display_name":null,"funder_award_id":"A18/BM/12341006","funder_id":"https://openalex.org/F4320321038","funder_display_name":"Fonds National de la Recherche Luxembourg"},{"id":"https://openalex.org/G8284467538","display_name":null,"funder_award_id":"12341006","funder_id":"https://openalex.org/F4320321038","funder_display_name":"Fonds National de la Recherche Luxembourg"}],"funders":[{"id":"https://openalex.org/F4320321008","display_name":"Universiteit van Amsterdam","ror":"https://ror.org/04dkp9463"},{"id":"https://openalex.org/F4320321038","display_name":"Fonds National de la Recherche Luxembourg","ror":"https://ror.org/039z13y21"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3120715532.pdf","grobid_xml":"https://content.openalex.org/works/W3120715532.grobid-xml"},"referenced_works_count":97,"referenced_works":["https://openalex.org/W143096088","https://openalex.org/W562646798","https://openalex.org/W585085135","https://openalex.org/W1488520384","https://openalex.org/W1508604947","https://openalex.org/W1543068333","https://openalex.org/W1862448690","https://openalex.org/W1964010911","https://openalex.org/W1973012451","https://openalex.org/W1989299822","https://openalex.org/W1995560800","https://openalex.org/W2009358784","https://openalex.org/W2020230458","https://openalex.org/W2027068200","https://openalex.org/W2038872823","https://openalex.org/W2048178510","https://openalex.org/W2050345155","https://openalex.org/W2073939393","https://openalex.org/W2080046774","https://openalex.org/W2081465448","https://openalex.org/W2091172481","https://openalex.org/W2095967914","https://openalex.org/W2101394823","https://openalex.org/W2106017862","https://openalex.org/W2107083991","https://openalex.org/W2107940314","https://openalex.org/W2110017950","https://openalex.org/W2112806519","https://openalex.org/W2115993694","https://openalex.org/W2146103026","https://openalex.org/W2150827955","https://openalex.org/W2159325249","https://openalex.org/W2179948434","https://openalex.org/W2264329385","https://openalex.org/W2285468881","https://openalex.org/W2287205341","https://openalex.org/W2322330034","https://openalex.org/W2325106992","https://openalex.org/W2462175440","https://openalex.org/W2473139211","https://openalex.org/W2510334816","https://openalex.org/W2548357532","https://openalex.org/W2563842495","https://openalex.org/W2580029075","https://openalex.org/W2582743722","https://openalex.org/W2591002382","https://openalex.org/W2616976488","https://openalex.org/W2740838806","https://openalex.org/W2740856177","https://openalex.org/W2748354746","https://openalex.org/W2753791687","https://openalex.org/W2760688277","https://openalex.org/W2766865563","https://openalex.org/W2769853272","https://openalex.org/W2777466035","https://openalex.org/W2804537538","https://openalex.org/W2808481523","https://openalex.org/W2810249717","https://openalex.org/W2892914268","https://openalex.org/W2896648185","https://openalex.org/W2897980676","https://openalex.org/W2900768516","https://openalex.org/W2905511466","https://openalex.org/W2907470641","https://openalex.org/W2912430686","https://openalex.org/W2913330600","https://openalex.org/W2916775979","https://openalex.org/W2922522932","https://openalex.org/W2948830798","https://openalex.org/W2964062642","https://openalex.org/W2964268114","https://openalex.org/W2973409925","https://openalex.org/W2979119341","https://openalex.org/W2980832723","https://openalex.org/W2981234113","https://openalex.org/W2988411357","https://openalex.org/W2991100935","https://openalex.org/W2995722311","https://openalex.org/W3005229756","https://openalex.org/W3018426427","https://openalex.org/W3031823855","https://openalex.org/W3043695720","https://openalex.org/W3087856867","https://openalex.org/W3088380395","https://openalex.org/W3088746340","https://openalex.org/W3089167717","https://openalex.org/W3092102938","https://openalex.org/W3105963012","https://openalex.org/W3209641253","https://openalex.org/W3210002506","https://openalex.org/W3212987647","https://openalex.org/W4237164438","https://openalex.org/W4242053123","https://openalex.org/W4251339138","https://openalex.org/W4253523717","https://openalex.org/W6912340174","https://openalex.org/W6949971002"],"related_works":["https://openalex.org/W4376877853","https://openalex.org/W1493891899","https://openalex.org/W4250928611","https://openalex.org/W166480398","https://openalex.org/W1612808768","https://openalex.org/W167327709","https://openalex.org/W1977393088","https://openalex.org/W4387839566","https://openalex.org/W4210922265","https://openalex.org/W2288962794"],"abstract_inverted_index":{"Mass":[0],"spectrometry":[1],"based":[2,59],"non-target":[3,70,136,198],"analysis":[4,71,199],"is":[5,142],"increasingly":[6],"adopted":[7],"in":[8,18,46],"environmental":[9,31,140],"sciences":[10],"to":[11,105,122,131,167,202],"screen":[12],"and":[13,68,79,103,107,134,147,171],"identify":[14],"numerous":[15],"chemicals":[16],"simultaneously":[17],"highly":[19],"complex":[20,112],"samples.":[21],"However,":[22],"current":[23],"data":[24,48,114,137,152],"processing":[25,110],"software":[26,61,91],"either":[27],"lack":[28],"functionality":[29,102],"for":[30,177],"sciences,":[32],"solve":[33],"only":[34],"part":[35],"of":[36,81,111,129,139,153,206],"the":[37,76,165],"workflow,":[38],"are":[39,44],"not":[40],"openly":[41],"available":[42],"and/or":[43],"restricted":[45],"input":[47],"formats.":[49],"In":[50,97,163],"this":[51],"paper":[52],"we":[53],"present":[54],"patRoon,":[55],"a":[56,94,145,157,203],"new":[57],"R":[58],"open-source":[60],"platform,":[62],"which":[63],"provides":[64],"comprehensive,":[65],"fully":[66],"tailored":[67],"straightforward":[69],"workflows.":[72],"This":[73,184],"platform":[74],"makes":[75],"use,":[77,169],"evaluation":[78],"mixing":[80],"well-tested":[82],"algorithms":[83,174],"seamless":[84],"by":[85],"harmonizing":[86],"various":[87,101],"common":[88],"(primarily":[89],"open)":[90],"tools":[92],"under":[93],"consistent":[95],"interface.":[96],"addition,":[98,164],"patRoon":[99,116,130,193],"offers":[100],"strategies":[104,121],"simplify":[106],"perform":[108,132],"automated":[109,135],"(environmental)":[113,197],"effectively.":[115],"implements":[117],"several":[118],"effective":[119],"optimization":[120],"significantly":[123],"reduce":[124],"computational":[125],"times.":[126],"The":[127],"ability":[128,166],"time-efficient":[133],"annotation":[138],"samples":[141,155],"demonstrated":[143,176],"with":[144,187],"simple":[146],"reproducible":[148],"workflow":[149],"using":[150],"open-access":[151],"spiked":[154],"from":[156],"drinking":[158],"water":[159],"treatment":[160],"plant":[161],"study.":[162],"easily":[168],"combine":[170],"evaluate":[172],"different":[173],"was":[175],"three":[178],"commonly":[179],"used":[180],"feature":[181],"finding":[182],"algorithms.":[183],"article,":[185],"combined":[186],"already":[188],"published":[189],"works,":[190],"demonstrate":[191],"that":[192],"helps":[194],"make":[195],"comprehensive":[196],"readily":[200],"accessible":[201],"wider":[204],"community":[205],"researchers.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":39},{"year":2024,"cited_by_count":56},{"year":2023,"cited_by_count":40},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":32},{"year":2020,"cited_by_count":3}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
