{"id":"https://openalex.org/W3092396754","doi":"https://doi.org/10.1186/s13321-020-00465-0","title":"A review of optical chemical structure recognition tools","display_name":"A review of optical chemical structure recognition tools","publication_year":2020,"publication_date":"2020-10-07","ids":{"openalex":"https://openalex.org/W3092396754","doi":"https://doi.org/10.1186/s13321-020-00465-0","mag":"3092396754","pmid":"https://pubmed.ncbi.nlm.nih.gov/33372625"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-020-00465-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00465-0","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-020-00465-0","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-020-00465-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017832889","display_name":"Kohulan Rajan","orcid":"https://orcid.org/0000-0003-1066-7792"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kohulan Rajan","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002477485","display_name":"Henning Otto Brinkhaus","orcid":"https://orcid.org/0000-0002-6664-2183"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Henning Otto Brinkhaus","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089744377","display_name":"Achim Zielesny","orcid":"https://orcid.org/0000-0003-0722-4229"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Achim Zielesny","raw_affiliation_strings":["Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, August-Schmidt-Ring 10, 45665, Recklinghausen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, August-Schmidt-Ring 10, 45665, Recklinghausen, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040194803","display_name":"Christoph Steinbeck","orcid":"https://orcid.org/0000-0001-6966-0814"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Steinbeck","raw_affiliation_strings":["Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany. christoph.steinbeck@uni-jena.de","Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6966-0814","affiliations":[{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany. christoph.steinbeck@uni-jena.de","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1551,"currency":"EUR","value_usd":1672},"fwci":7.7286,"has_fulltext":true,"cited_by_count":81,"citation_normalized_percentile":{"value":0.97835152,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"12","issue":"1","first_page":"60","last_page":"60"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9635999798774719,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9592999815940857,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8052798509597778},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5939614176750183},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5672765374183655},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5289661288261414},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.5180218815803528},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4988725185394287},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4925118386745453},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4734953045845032},{"id":"https://openalex.org/keywords/vectorization","display_name":"Vectorization (mathematics)","score":0.4591071605682373},{"id":"https://openalex.org/keywords/machine-translation","display_name":"Machine translation","score":0.43163472414016724},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.41570496559143066},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3784435987472534},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07753148674964905}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8052798509597778},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5939614176750183},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5672765374183655},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5289661288261414},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.5180218815803528},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4988725185394287},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4925118386745453},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4734953045845032},{"id":"https://openalex.org/C41681595","wikidata":"https://www.wikidata.org/wiki/Q7917855","display_name":"Vectorization (mathematics)","level":2,"score":0.4591071605682373},{"id":"https://openalex.org/C203005215","wikidata":"https://www.wikidata.org/wiki/Q79798","display_name":"Machine translation","level":2,"score":0.43163472414016724},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.41570496559143066},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3784435987472534},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07753148674964905},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-020-00465-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00465-0","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-020-00465-0","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:33372625","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33372625","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:33a45e7f35a347a08439af07bc0dedd2","is_oa":true,"landing_page_url":"https://doaj.org/article/33a45e7f35a347a08439af07bc0dedd2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 12, Iss 1, Pp 1-13 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7541205","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7541205","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:www.db-thueringen.de:dbt_mods_00056109","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:gbv:27-dbt-20230323-221757-006","pdf_url":null,"source":{"id":"https://openalex.org/S4306400120","display_name":"Common Library Network (Der Gemeinsame Bibliotheksverbund)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210149878","host_organization_name":"Verbundzentrale des GBV","host_organization_lineage":["https://openalex.org/I4210149878"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-020-00465-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00465-0","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-020-00465-0","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309895","display_name":"Carl-Zeiss-Stiftung","ror":"https://ror.org/03ng4kg22"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3092396754.pdf","grobid_xml":"https://content.openalex.org/works/W3092396754.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W29374554","https://openalex.org/W1243254526","https://openalex.org/W1492614353","https://openalex.org/W1901129140","https://openalex.org/W1966456689","https://openalex.org/W1975147762","https://openalex.org/W1976144034","https://openalex.org/W1977970897","https://openalex.org/W1981934656","https://openalex.org/W2003889584","https://openalex.org/W2021662118","https://openalex.org/W2051554764","https://openalex.org/W2051810242","https://openalex.org/W2057418400","https://openalex.org/W2061890234","https://openalex.org/W2069719501","https://openalex.org/W2077357770","https://openalex.org/W2087563523","https://openalex.org/W2095905764","https://openalex.org/W2112207373","https://openalex.org/W2117742927","https://openalex.org/W2118832478","https://openalex.org/W2119821739","https://openalex.org/W2133059825","https://openalex.org/W2137126099","https://openalex.org/W2155893237","https://openalex.org/W2160592517","https://openalex.org/W2166468803","https://openalex.org/W2169410963","https://openalex.org/W2170484170","https://openalex.org/W2244145167","https://openalex.org/W2286929393","https://openalex.org/W2287645382","https://openalex.org/W2396131492","https://openalex.org/W2403451154","https://openalex.org/W2517617279","https://openalex.org/W2523785361","https://openalex.org/W2558999090","https://openalex.org/W2559655401","https://openalex.org/W2899070097","https://openalex.org/W2899771611","https://openalex.org/W2949888546","https://openalex.org/W2963734039","https://openalex.org/W2964350391","https://openalex.org/W3007750971","https://openalex.org/W3103383152","https://openalex.org/W4206607683","https://openalex.org/W4234384669","https://openalex.org/W4244568576","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2762467749","https://openalex.org/W2378211422","https://openalex.org/W2374048355","https://openalex.org/W2161584192","https://openalex.org/W2359910081","https://openalex.org/W2381929598","https://openalex.org/W2383797864","https://openalex.org/W3024308452","https://openalex.org/W2364351544","https://openalex.org/W2385460613"],"abstract_inverted_index":{"Structural":[0],"information":[1],"about":[2],"chemical":[3,34],"compounds":[4],"is":[5,46,63,103],"typically":[6],"conveyed":[7],"as":[8,65,112],"2D":[9],"images":[10],"of":[11,25,31,33,53,80,98,100,108,120,136,148],"molecular":[12,55],"structures":[13],"in":[14,36,42,82,145,163],"scientific":[15],"documents.":[16],"Unfortunately,":[17],"these":[18],"depictions":[19,56],"are":[20,73,124],"not":[21,39],"a":[22,29,47,91,151],"machine-readable":[23,58],"representation":[24],"the":[26,51,95,101,106,121,146,158],"molecules.":[27],"With":[28],"backlog":[30],"decades":[32,79],"literature":[35],"printed":[37],"form":[38],"properly":[40],"represented":[41],"open-access":[43],"databases,":[44],"there":[45],"high":[48],"demand":[49],"for":[50],"translation":[52,61],"graphical":[54],"into":[57],"formats.":[59],"This":[60,131],"process":[62],"known":[64],"Optical":[66],"Chemical":[67],"Structure":[68],"Recognition":[69],"(OCSR).":[70],"Today,":[71],"we":[72],"looking":[74],"back":[75],"on":[76,126],"nearly":[77],"three":[78],"development":[81],"this":[83],"demanding":[84],"research":[85],"field.":[86],"Most":[87],"OCSR":[88,161],"methods":[89,138],"follow":[90],"rule-based":[92],"approach":[93],"where":[94],"key":[96],"step":[97],"vectorization":[99],"depiction":[102],"followed":[104],"by":[105],"interpretation":[107],"vectors":[109],"and":[110,114,139],"nodes":[111],"bonds":[113],"atoms.":[115],"Opposed":[116],"to":[117,165],"that,":[118],"some":[119],"latest":[122],"approaches":[123],"based":[125],"deep":[127],"neural":[128],"networks":[129],"(DNN).":[130],"review":[132],"provides":[133],"an":[134],"overview":[135],"all":[137],"tools":[140,162],"that":[141],"have":[142],"been":[143],"published":[144],"field":[147],"OCSR.":[149],"Additionally,":[150],"small":[152],"benchmark":[153],"study":[154],"was":[155],"performed":[156],"with":[157],"available":[159],"open-source":[160],"order":[164],"examine":[166],"their":[167],"performance.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":20}],"updated_date":"2026-07-04T07:58:01.006859","created_date":"2025-10-10T00:00:00"}
