{"id":"https://openalex.org/W3030363843","doi":"https://doi.org/10.1186/s13321-020-00424-9","title":"Review on natural products databases: where to find data in 2020","display_name":"Review on natural products databases: where to find data in 2020","publication_year":2020,"publication_date":"2020-04-03","ids":{"openalex":"https://openalex.org/W3030363843","doi":"https://doi.org/10.1186/s13321-020-00424-9","mag":"3030363843","pmid":"https://pubmed.ncbi.nlm.nih.gov/33431011"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-020-00424-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00424-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-020-00424-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-020-00424-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067480046","display_name":"Maria Sorokina","orcid":"https://orcid.org/0000-0001-9359-7149"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Maria Sorokina","raw_affiliation_strings":["University Friedrich-Schiller, Lessing Strasse 8, 07743, Jena, Germany. maria.sorokina@uni-jena.de","University Friedrich-Schiller, Lessing Strasse 8, 07743, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"University Friedrich-Schiller, Lessing Strasse 8, 07743, Jena, Germany. maria.sorokina@uni-jena.de","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"University Friedrich-Schiller, Lessing Strasse 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040194803","display_name":"Christoph Steinbeck","orcid":"https://orcid.org/0000-0001-6966-0814"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Steinbeck","raw_affiliation_strings":["University Friedrich-Schiller, Lessing Strasse 8, 07743, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"University Friedrich-Schiller, Lessing Strasse 8, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5067480046"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":44.994,"has_fulltext":false,"cited_by_count":469,"citation_normalized_percentile":{"value":0.99946242,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"12","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6648937463760376},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6331592798233032},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43585628271102905},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4194907248020172},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36966145038604736}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6648937463760376},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6331592798233032},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43585628271102905},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4194907248020172},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36966145038604736}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-020-00424-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00424-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-020-00424-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:33431011","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33431011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c2d6eabc4e124c7d8245c71e3ebcc906","is_oa":true,"landing_page_url":"https://doaj.org/article/c2d6eabc4e124c7d8245c71e3ebcc906","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 12, Iss 1, Pp 1-51 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7118820","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7118820","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-020-00424-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-020-00424-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-020-00424-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G1406299232","display_name":null,"funder_award_id":"CRC1127","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7796124183","display_name":null,"funder_award_id":"CRC1127 ChemBioSys","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3030363843.pdf","grobid_xml":"https://content.openalex.org/works/W3030363843.grobid-xml"},"referenced_works_count":136,"referenced_works":["https://openalex.org/W32903230","https://openalex.org/W139963667","https://openalex.org/W221559319","https://openalex.org/W1493055596","https://openalex.org/W1516652020","https://openalex.org/W1519298624","https://openalex.org/W1552539736","https://openalex.org/W1752026660","https://openalex.org/W1757990252","https://openalex.org/W1944437896","https://openalex.org/W1948399563","https://openalex.org/W1964572291","https://openalex.org/W1969053334","https://openalex.org/W1969996239","https://openalex.org/W1975494205","https://openalex.org/W1976210486","https://openalex.org/W1976892175","https://openalex.org/W1977560336","https://openalex.org/W1982215868","https://openalex.org/W1986007273","https://openalex.org/W1991757630","https://openalex.org/W1993352447","https://openalex.org/W2006494286","https://openalex.org/W2006607885","https://openalex.org/W2015582400","https://openalex.org/W2015809202","https://openalex.org/W2018518196","https://openalex.org/W2020001155","https://openalex.org/W2023262914","https://openalex.org/W2039574315","https://openalex.org/W2043857517","https://openalex.org/W2046128097","https://openalex.org/W2046521789","https://openalex.org/W2050113624","https://openalex.org/W2053098824","https://openalex.org/W2054759514","https://openalex.org/W2059529709","https://openalex.org/W2062738620","https://openalex.org/W2064963922","https://openalex.org/W2069928158","https://openalex.org/W2078077898","https://openalex.org/W2078649354","https://openalex.org/W2081110734","https://openalex.org/W2081224760","https://openalex.org/W2085138189","https://openalex.org/W2088226047","https://openalex.org/W2088856219","https://openalex.org/W2090008197","https://openalex.org/W2097186436","https://openalex.org/W2097750439","https://openalex.org/W2098214115","https://openalex.org/W2100190412","https://openalex.org/W2111139603","https://openalex.org/W2111581388","https://openalex.org/W2112872200","https://openalex.org/W2123161999","https://openalex.org/W2124679671","https://openalex.org/W2130688401","https://openalex.org/W2131076169","https://openalex.org/W2137676811","https://openalex.org/W2139932193","https://openalex.org/W2140611297","https://openalex.org/W2142678031","https://openalex.org/W2144349353","https://openalex.org/W2146449118","https://openalex.org/W2148671784","https://openalex.org/W2154139219","https://openalex.org/W2156484428","https://openalex.org/W2161671078","https://openalex.org/W2162000047","https://openalex.org/W2163305701","https://openalex.org/W2166829616","https://openalex.org/W2168775915","https://openalex.org/W2175390955","https://openalex.org/W2202347610","https://openalex.org/W2203336266","https://openalex.org/W2204695023","https://openalex.org/W2229450847","https://openalex.org/W2256742438","https://openalex.org/W2302501749","https://openalex.org/W2327839654","https://openalex.org/W2342805349","https://openalex.org/W2407633570","https://openalex.org/W2504691963","https://openalex.org/W2511570380","https://openalex.org/W2519670684","https://openalex.org/W2533446135","https://openalex.org/W2558428302","https://openalex.org/W2558999090","https://openalex.org/W2559588208","https://openalex.org/W2576721541","https://openalex.org/W2580979678","https://openalex.org/W2604198950","https://openalex.org/W2609551972","https://openalex.org/W2622236128","https://openalex.org/W2651157417","https://openalex.org/W2739691438","https://openalex.org/W2743535258","https://openalex.org/W2751692355","https://openalex.org/W2765513824","https://openalex.org/W2766193612","https://openalex.org/W2766295385","https://openalex.org/W2767088268","https://openalex.org/W2767683865","https://openalex.org/W2767891136","https://openalex.org/W2773787581","https://openalex.org/W2786394271","https://openalex.org/W2810172849","https://openalex.org/W2810270980","https://openalex.org/W2883827837","https://openalex.org/W2887459817","https://openalex.org/W2898092412","https://openalex.org/W2898264436","https://openalex.org/W2898468989","https://openalex.org/W2898642324","https://openalex.org/W2899608837","https://openalex.org/W2899903294","https://openalex.org/W2900502372","https://openalex.org/W2902341473","https://openalex.org/W2904796117","https://openalex.org/W2949305189","https://openalex.org/W2951145923","https://openalex.org/W2967862438","https://openalex.org/W2968837741","https://openalex.org/W2969876208","https://openalex.org/W2970534831","https://openalex.org/W2971831339","https://openalex.org/W2973314554","https://openalex.org/W2979173480","https://openalex.org/W2980560804","https://openalex.org/W2990492260","https://openalex.org/W4211018043","https://openalex.org/W4233120011","https://openalex.org/W4239934460","https://openalex.org/W4244321733","https://openalex.org/W4394164107"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Natural":[0],"products":[1],"(NPs)":[2],"have":[3],"been":[4],"the":[5,10,14,18,30,64,120,157,160,171,205],"centre":[6],"of":[7,9,39,60,82,104,143,159,162,181,209],"attention":[8],"scientific":[11,111],"community":[12],"in":[13,29,110,119,152,175],"last":[15,31],"decencies":[16],"and":[17,42,63,73,77,88,113,191,194],"interest":[19],"around":[20],"them":[21,83],"continues":[22],"to":[23,139,212],"grow":[24],"incessantly.":[25],"As":[26],"a":[27,36,57,140,179],"consequence,":[28],"20":[32],"years,":[33],"there":[34],"was":[35],"rapid":[37],"multiplication":[38],"various":[40],"databases":[41,72,99],"collections":[43,74,103,114],"as":[44,107],"generalistic":[45],"or":[46],"thematic":[47],"resources":[48],"for":[49,123,197],"NP":[50,71],"information.":[51],"In":[52],"this":[53,153,166,213],"review,":[54,167],"we":[55,168],"establish":[56],"complete":[58],"overview":[59],"these":[61],"resources,":[62],"numbers":[65],"are":[66,84,91,132,150],"overwhelming:":[67],"over":[68,198],"120":[69],"different":[70],"were":[75,116],"published":[76,106,129],"re-used":[78],"since":[79],"2000.":[80],"98":[81],"still":[85],"somehow":[86],"accessible":[87,135],"only":[89,98],"50":[90],"open":[92,163,207],"access.":[93],"The":[94,147],"latter":[95],"include":[96],"not":[97,134],"but":[100],"also":[101,169],"big":[102],"NPs":[105,210],"supplementary":[108],"material":[109],"publications":[112],"that":[115],"backed":[117],"up":[118],"ZINC":[121],"database":[122],"commercially-available":[124],"compounds.":[125],"Some":[126],"databases,":[127],"even":[128],"relatively":[130],"recently":[131],"already":[133],"anymore,":[136],"which":[137,186,202],"leads":[138],"dramatic":[141],"loss":[142],"data":[144,148],"on":[145,189],"NPs.":[146],"sources":[149],"presented":[151],"manuscript,":[154],"together":[155],"with":[156],"comparison":[158],"content":[161],"ones.":[164],"With":[165],"compiled":[170],"open-access":[172],"natural":[173],"compounds":[174],"one":[176],"single":[177],"dataset":[178],"COlleCtion":[180],"Open":[182],"NatUral":[183],"producTs":[184],"(COCONUT),":[185],"is":[187],"available":[188,211],"Zenodo":[190],"contains":[192],"structures":[193],"sparse":[195],"annotations":[196],"400,000":[199],"non-redundant":[200],"NPs,":[201],"makes":[203],"it":[204],"biggest":[206],"collection":[208],"date.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":70},{"year":2024,"cited_by_count":101},{"year":2023,"cited_by_count":90},{"year":2022,"cited_by_count":94},{"year":2021,"cited_by_count":73},{"year":2020,"cited_by_count":29}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}