{"id":"https://openalex.org/W2942037691","doi":"https://doi.org/10.1186/s13321-019-0345-8","title":"Too many tags spoil the metadata: investigating the knowledge management of scientific research with semantic web technologies","display_name":"Too many tags spoil the metadata: investigating the knowledge management of scientific research with semantic web technologies","publication_year":2019,"publication_date":"2019-03-21","ids":{"openalex":"https://openalex.org/W2942037691","doi":"https://doi.org/10.1186/s13321-019-0345-8","mag":"2942037691","pmid":"https://pubmed.ncbi.nlm.nih.gov/30900066"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-019-0345-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-019-0345-8","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-019-0345-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-019-0345-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009212856","display_name":"Samantha Kanza","orcid":"https://orcid.org/0000-0002-4831-9489"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Samantha Kanza","raw_affiliation_strings":["University of Southampton, Southampton, SO17 1BJ, UK. s.kanza@soton.ac.uk","University of Southampton, Southampton, SO17 1BJ, UK"],"raw_orcid":"https://orcid.org/0000-0002-4831-9489","affiliations":[{"raw_affiliation_string":"University of Southampton, Southampton, SO17 1BJ, UK. s.kanza@soton.ac.uk","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"University of Southampton, Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050816656","display_name":"Nicholas Gibbins","orcid":"https://orcid.org/0000-0002-6140-9956"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicholas Gibbins","raw_affiliation_strings":["University of Southampton, Southampton, SO17 1BJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton, Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025830443","display_name":"Jeremy G. Frey","orcid":"https://orcid.org/0000-0003-0842-4302"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jeremy G. Frey","raw_affiliation_strings":["University of Southampton, Southampton, SO17 1BJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton, Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5009212856"],"corresponding_institution_ids":["https://openalex.org/I43439940"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.4678,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.91169371,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7577036619186401},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6626800894737244},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6443149447441101},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6387595534324646},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6179862022399902},{"id":"https://openalex.org/keywords/semantic-technology","display_name":"Semantic technology","score":0.5261718034744263},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.5206695795059204},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4773707091808319},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.45592689514160156},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.4325181543827057},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.36924490332603455},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13148295879364014}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7577036619186401},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6626800894737244},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6443149447441101},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6387595534324646},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6179862022399902},{"id":"https://openalex.org/C6881194","wikidata":"https://www.wikidata.org/wiki/Q7449091","display_name":"Semantic technology","level":4,"score":0.5261718034744263},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.5206695795059204},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4773707091808319},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.45592689514160156},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.4325181543827057},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.36924490332603455},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13148295879364014},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-019-0345-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-019-0345-8","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-019-0345-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:30900066","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30900066","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:eprints.soton.ac.uk:429579","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:e40d1b3c1e6c402787f2db81c86610b3","is_oa":true,"landing_page_url":"https://doaj.org/article/e40d1b3c1e6c402787f2db81c86610b3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 11, Iss 1, Pp 1-23 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5425554","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6427892","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-019-0345-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-019-0345-8","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-019-0345-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G181173218","display_name":null,"funder_award_id":"EP/C008863/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2776364917","display_name":null,"funder_award_id":"EP/K003569/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2891191998","display_name":null,"funder_award_id":"EP/G036926/1","funder_id":"https://openalex.org/F4320320277","funder_display_name":"University of Southampton"},{"id":"https://openalex.org/G3069159407","display_name":null,"funder_award_id":"EP/S000356/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3813234199","display_name":"Doctoral Training Centre in Web Science","funder_award_id":"EP/G036926/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4349673913","display_name":null,"funder_award_id":"EP/G026238/","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G45467002","display_name":null,"funder_award_id":"GR/R67729/01","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4660795319","display_name":null,"funder_award_id":"EP/G026238/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5596758552","display_name":"myGrid: A Platform for e-Biology Renewal","funder_award_id":"EP/G026238/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6720185052","display_name":null,"funder_award_id":"EP/G026238","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7871437693","display_name":null,"funder_award_id":"EP/K003569","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7935560967","display_name":null,"funder_award_id":"GR/R67729","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8383234664","display_name":null,"funder_award_id":"EP/C008863","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8596801346","display_name":"Digital Economy IT as a Utility Network+","funder_award_id":"EP/K003569/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320277","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2942037691.pdf","grobid_xml":"https://content.openalex.org/works/W2942037691.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W14097345","https://openalex.org/W18171699","https://openalex.org/W74040339","https://openalex.org/W1549014378","https://openalex.org/W1565044497","https://openalex.org/W1597406287","https://openalex.org/W1964126011","https://openalex.org/W1968549787","https://openalex.org/W1974588454","https://openalex.org/W2005411433","https://openalex.org/W2005875092","https://openalex.org/W2010758924","https://openalex.org/W2021235830","https://openalex.org/W2033377040","https://openalex.org/W2041177626","https://openalex.org/W2047500748","https://openalex.org/W2054470867","https://openalex.org/W2083071273","https://openalex.org/W2102775690","https://openalex.org/W2110279208","https://openalex.org/W2111044246","https://openalex.org/W2127295581","https://openalex.org/W2130505887","https://openalex.org/W2137504018","https://openalex.org/W2142012004","https://openalex.org/W2159790018","https://openalex.org/W2296157284","https://openalex.org/W2614261290","https://openalex.org/W2619484455","https://openalex.org/W3123015762","https://openalex.org/W4232734240","https://openalex.org/W4239696231","https://openalex.org/W4240274793"],"related_works":["https://openalex.org/W2025728896","https://openalex.org/W2013055153","https://openalex.org/W2189209437","https://openalex.org/W4252741181","https://openalex.org/W1985397115","https://openalex.org/W2111235920","https://openalex.org/W2068597994","https://openalex.org/W2069492413","https://openalex.org/W2297538506","https://openalex.org/W2133709246"],"abstract_inverted_index":{"Scientific":[0],"research":[1],"is":[2],"increasingly":[3],"characterised":[4],"by":[5,135],"the":[6,112,156,168,185],"volume":[7],"of":[8,40,78,87,115,118,160,188,200],"documents":[9,60,164],"and":[10,18,23,30,36,47,65,81,107,139,162,202],"data":[11,20],"that":[12],"it":[13],"produces,":[14],"from":[15],"experimental":[16],"plans":[17],"raw":[19],"to":[21,28,61,97,108,141,149],"reports":[22],"papers.":[24],"Researchers":[25],"frequently":[26],"struggle":[27],"manage":[29],"curate":[31],"these":[32,104,123],"materials,":[33],"both":[34],"individually":[35],"collectively.":[37],"Previous":[38],"studies":[39],"Electronic":[41],"Lab":[42],"Notebooks":[43],"(ELNs)":[44],"in":[45,170],"academia":[46],"industry":[48],"have":[49],"identified":[50],"semantic":[51,95,119,130,189],"web":[52,120,190],"technologies":[53,124,191],"as":[54,99],"a":[55,74,85,93,100,116,197],"means":[56],"for":[57,103,129,178],"organising":[58],"scientific":[59],"improve":[62],"current":[63,151],"workflows":[64],"knowledge":[66],"management":[67],"practices.":[68,153],"In":[69,154],"this":[70],"paper,":[71],"we":[72],"present":[73],"qualitative,":[75],"user-centred":[76],"study":[77],"researcher":[79,152],"requirements":[80,177],"practices,":[82],"based":[83],"on":[84],"series":[86],"discipline-specific":[88],"focus":[89,105,137,172],"groups.":[90],"We":[91],"developed":[92],"prototype":[94],"ELN":[96],"serve":[98],"discussion":[101],"aid":[102],"groups,":[106,138],"help":[109],"us":[110],"explore":[111],"technical":[113],"readiness":[114],"range":[117],"technologies.":[121],"While":[122],"showed":[125],"potential,":[126],"existing":[127],"tools":[128],"annotation":[131],"were":[132],"not":[133],"well-received":[134],"our":[136,171],"need":[140],"be":[142,147],"refined":[143],"before":[144],"they":[145,180],"can":[146],"used":[148],"enhance":[150],"addition,":[155],"seemingly":[157],"simple":[158],"notion":[159],"\"tagging":[161],"searching\"":[163],"appears":[165],"anything":[166],"but;":[167],"researchers":[169],"groups":[173],"had":[174],"extremely":[175],"personal":[176],"how":[179],"organise":[181],"their":[182,193],"work,":[183],"so":[184],"successful":[186],"incorporation":[187],"into":[192],"practices":[194],"must":[195],"permit":[196],"significant":[198],"degree":[199],"customisation":[201],"personalisation.":[203]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
