{"id":"https://openalex.org/W2919818934","doi":"https://doi.org/10.1186/s13321-019-0332-0","title":"Chemoinformatics and structural bioinformatics in OCaml","display_name":"Chemoinformatics and structural bioinformatics in OCaml","publication_year":2019,"publication_date":"2019-02-05","ids":{"openalex":"https://openalex.org/W2919818934","doi":"https://doi.org/10.1186/s13321-019-0332-0","mag":"2919818934","pmid":"https://pubmed.ncbi.nlm.nih.gov/30719579"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-019-0332-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-019-0332-0","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s13321-019-0332-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071115328","display_name":"Francois Berenger","orcid":"https://orcid.org/0000-0003-1377-944X"},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Francois Berenger","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Fukuoka, Japan. beren314@bio.kyutech.ac.jp","Department of Bioscience and Bioinformatics, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Fukuoka, Japan"],"raw_orcid":"https://orcid.org/0000-0003-1377-944X","affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Fukuoka, Japan. beren314@bio.kyutech.ac.jp","institution_ids":["https://openalex.org/I207014233"]},{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Fukuoka, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044307373","display_name":"Kam Y. J. Zhang","orcid":"https://orcid.org/0000-0002-9282-8045"},"institutions":[{"id":"https://openalex.org/I4210116810","display_name":"RIKEN Center for Biosystems Dynamics Research","ror":"https://ror.org/023rffy11","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210116810"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kam Y. J. Zhang","raw_affiliation_strings":["Laboratory for Structural Bioinformatics, Center for Biosystems Dynamics Research, RIKEN, Yokohama, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Structural Bioinformatics, Center for Biosystems Dynamics Research, RIKEN, Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210116810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035394108","display_name":"Yoshihiro Yamanishi","orcid":"https://orcid.org/0000-0003-2279-8773"},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshihiro Yamanishi","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Fukuoka, Japan","PRESTO, Japan Science and Technology Agency, Kawaguchi, Saitama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Fukuoka, Japan","institution_ids":["https://openalex.org/I207014233"]},{"raw_affiliation_string":"PRESTO, Japan Science and Technology Agency, Kawaguchi, Saitama, Japan","institution_ids":["https://openalex.org/I4210086780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.2171,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.92673091,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"11","issue":"1","first_page":"10","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.5533000230789185,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.5533000230789185,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.15440000593662262,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.02319999970495701,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.9174636602401733},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7413029074668884},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.5267645120620728},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3924996256828308},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.38341131806373596},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.36171984672546387},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34478485584259033},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3256192207336426},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.14002791047096252},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10717847943305969},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0805816650390625}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.9174636602401733},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7413029074668884},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.5267645120620728},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3924996256828308},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.38341131806373596},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.36171984672546387},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34478485584259033},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3256192207336426},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.14002791047096252},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10717847943305969},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0805816650390625},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-019-0332-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-019-0332-0","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:30719579","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30719579","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f62bb7266836481d89164b177e9b8300","is_oa":false,"landing_page_url":"https://doaj.org/article/f62bb7266836481d89164b177e9b8300","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 11, Iss 1, Pp 1-13 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6689879","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6689879","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-019-0332-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-019-0332-0","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5191902024","display_name":"\u30a8\u30b3\u30d5\u30a1\u30fc\u30de\u306b\u3088\u308b\u9ad8\u901f\u304b\u3064\u7701\u30a8\u30cd\u5275\u85ac\u3092\u5b9f\u73fe\u3059\u308b\u60c5\u5831\u6280\u8853\u306e\u69cb\u7bc9","funder_award_id":"JPMJPR15D8","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":89,"referenced_works":["https://openalex.org/W607696570","https://openalex.org/W629763798","https://openalex.org/W777621473","https://openalex.org/W1490347130","https://openalex.org/W1557561422","https://openalex.org/W1560253649","https://openalex.org/W1568652129","https://openalex.org/W1650987719","https://openalex.org/W1881465144","https://openalex.org/W1968319881","https://openalex.org/W1975147762","https://openalex.org/W1982209843","https://openalex.org/W1983775902","https://openalex.org/W1984723872","https://openalex.org/W1990851909","https://openalex.org/W2000050698","https://openalex.org/W2002195128","https://openalex.org/W2019376542","https://openalex.org/W2029582401","https://openalex.org/W2040860090","https://openalex.org/W2042110087","https://openalex.org/W2047399603","https://openalex.org/W2047541540","https://openalex.org/W2049644877","https://openalex.org/W2068281071","https://openalex.org/W2071043671","https://openalex.org/W2071126597","https://openalex.org/W2081895545","https://openalex.org/W2082000355","https://openalex.org/W2087307736","https://openalex.org/W2089241138","https://openalex.org/W2089674328","https://openalex.org/W2091967195","https://openalex.org/W2097120616","https://openalex.org/W2097921974","https://openalex.org/W2101234009","https://openalex.org/W2108302275","https://openalex.org/W2110127190","https://openalex.org/W2116335447","https://openalex.org/W2122465391","https://openalex.org/W2127760066","https://openalex.org/W2129075135","https://openalex.org/W2132629607","https://openalex.org/W2136000909","https://openalex.org/W2144063122","https://openalex.org/W2149906774","https://openalex.org/W2155653793","https://openalex.org/W2158219301","https://openalex.org/W2161630922","https://openalex.org/W2164197394","https://openalex.org/W2166822586","https://openalex.org/W2169678694","https://openalex.org/W2173702800","https://openalex.org/W2213735563","https://openalex.org/W2226569661","https://openalex.org/W2247694024","https://openalex.org/W2295914203","https://openalex.org/W2396532684","https://openalex.org/W2519322152","https://openalex.org/W2582743722","https://openalex.org/W2584452936","https://openalex.org/W2611943439","https://openalex.org/W2619945721","https://openalex.org/W2620172435","https://openalex.org/W2622236128","https://openalex.org/W2740476102","https://openalex.org/W2742894870","https://openalex.org/W2749285214","https://openalex.org/W2753364399","https://openalex.org/W2757126752","https://openalex.org/W2767264276","https://openalex.org/W2770391711","https://openalex.org/W2785486742","https://openalex.org/W2807744179","https://openalex.org/W2911964244","https://openalex.org/W2915687040","https://openalex.org/W2952187406","https://openalex.org/W2953384591","https://openalex.org/W2956131382","https://openalex.org/W3037986940","https://openalex.org/W3087123435","https://openalex.org/W3194139813","https://openalex.org/W4214487305","https://openalex.org/W4231995779","https://openalex.org/W4236516541","https://openalex.org/W4242767025","https://openalex.org/W4251391716","https://openalex.org/W4296694382","https://openalex.org/W6968782951"],"related_works":["https://openalex.org/W1983817726","https://openalex.org/W4394858778","https://openalex.org/W2075692164","https://openalex.org/W4385255465","https://openalex.org/W4386344406","https://openalex.org/W1585658352","https://openalex.org/W103890959","https://openalex.org/W2952723686","https://openalex.org/W2625471714","https://openalex.org/W2018220225"],"abstract_inverted_index":{"BACKGROUND:":[0],"OCaml":[1,49,78,96,103],"is":[2,83,104],"a":[3,105],"functional":[4],"programming":[5,106],"language":[6,107],"with":[7],"strong":[8],"static":[9],"types,":[10],"Hindley-Milner":[11],"type":[12],"inference":[13],"and":[14,27,50,80,88,115],"garbage":[15],"collection.":[16],"In":[17,100],"this":[18],"article,":[19],"we":[20,35,55],"share":[21],"our":[22,101],"experience":[23],"in":[24,31,48,63,73,95,113],"prototyping":[25,92],"chemoinformatics":[26,114],"structural":[28,116],"bioinformatics":[29],"software":[30,61,94],"OCaml.":[32,64],"RESULTS:":[33],"First,":[34],"introduce":[36],"the":[37],"language,":[38],"list":[39,56],"entry":[40],"points":[41],"for":[42,110],"chemoinformaticians":[43],"who":[44],"would":[45],"be":[46],"interested":[47],"give":[51],"code":[52],"examples.":[53],"Then,":[54],"some":[57],"scientific":[58,93],"open":[59,69],"source":[60,70],"written":[62],"We":[65],"also":[66,84],"present":[67],"recent":[68],"libraries":[71],"useful":[72,90],"chemoinformatics.":[74],"The":[75],"parallelization":[76],"of":[77,108],"programs":[79],"their":[81],"performance":[82],"shown.":[85],"Finally,":[86],"tools":[87],"methods":[89],"when":[91],"are":[97],"given.":[98],"CONCLUSIONS:":[99],"experience,":[102],"choice":[109],"method":[111],"development":[112],"bioinformatics.":[117]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
