{"id":"https://openalex.org/W2911448018","doi":"https://doi.org/10.1186/s13321-018-0326-3","title":"OGER++: hybrid multi-type entity recognition","display_name":"OGER++: hybrid multi-type entity recognition","publication_year":2019,"publication_date":"2019-01-21","ids":{"openalex":"https://openalex.org/W2911448018","doi":"https://doi.org/10.1186/s13321-018-0326-3","mag":"2911448018","pmid":"https://pubmed.ncbi.nlm.nih.gov/30666476"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-018-0326-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0326-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-018-0326-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-018-0326-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003198923","display_name":"Lenz Furrer","orcid":"https://orcid.org/0000-0003-1841-8731"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lenz Furrer","raw_affiliation_strings":["Institute of Computational Linguistics, University of Zurich, Andreasstr. 15, 8050, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Linguistics, University of Zurich, Andreasstr. 15, 8050, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083901452","display_name":"Anna Jancso","orcid":null},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Anna Jancso","raw_affiliation_strings":["Institute of Computational Linguistics, University of Zurich, Andreasstr. 15, 8050, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Linguistics, University of Zurich, Andreasstr. 15, 8050, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020040430","display_name":"Nicola Colic","orcid":"https://orcid.org/0000-0003-1071-5571"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nicola Colic","raw_affiliation_strings":["Institute of Computational Linguistics, University of Zurich, Andreasstr. 15, 8050, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Linguistics, University of Zurich, Andreasstr. 15, 8050, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025307528","display_name":"Fabio Rinaldi","orcid":"https://orcid.org/0000-0001-5718-5462"},"institutions":[{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Fabio Rinaldi","raw_affiliation_strings":["Fondazione Bruno Kessler, Via Sommarive, 18, 38123, Trento, Italy. fabio.rinaldi@uzh.ch","Institute of Computational Linguistics, University of Zurich, Andreasstr. 15, 8050, Z\u00fcrich, Switzerland. fabio.rinaldi@uzh.ch","Fondazione Bruno Kessler, Via Sommarive, 18, 38123, Trento, Italy"],"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler, Via Sommarive, 18, 38123, Trento, Italy. fabio.rinaldi@uzh.ch","institution_ids":[]},{"raw_affiliation_string":"Institute of Computational Linguistics, University of Zurich, Andreasstr. 15, 8050, Z\u00fcrich, Switzerland. fabio.rinaldi@uzh.ch","institution_ids":[]},{"raw_affiliation_string":"Fondazione Bruno Kessler, Via Sommarive, 18, 38123, Trento, Italy","institution_ids":["https://openalex.org/I2277624104"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025307528"],"corresponding_institution_ids":["https://openalex.org/I2277624104"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1279,"currency":"EUR","value_usd":1379},"fwci":2.6624,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.90729092,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"7","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8883206844329834},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.6240304708480835},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6054487228393555},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5803780555725098},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5540633201599121},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5371502041816711},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.4893633723258972},{"id":"https://openalex.org/keywords/text-recognition","display_name":"Text recognition","score":0.42499569058418274},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.41982030868530273},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39793041348457336}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8883206844329834},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.6240304708480835},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6054487228393555},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5803780555725098},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5540633201599121},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5371502041816711},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.4893633723258972},{"id":"https://openalex.org/C2983812711","wikidata":"https://www.wikidata.org/wiki/Q167555","display_name":"Text recognition","level":3,"score":0.42499569058418274},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.41982030868530273},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39793041348457336},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13321-018-0326-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0326-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-018-0326-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:30666476","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30666476","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:162875","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Furrer, Lenz; Jancso, Anna; Colic, Nicola; Rinaldi, Fabio  (2019). OGER++: hybrid multi-type entity recognition.  Journal of Cheminformatics, 11(1):7.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:14b93b320eda4ea8af06e75a670759b0","is_oa":true,"landing_page_url":"https://doaj.org/article/14b93b320eda4ea8af06e75a670759b0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 11, Iss 1, Pp 1-10 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6689863","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6689863","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"doi:10.5167/uzh-162875","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-162875","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/s13321-018-0326-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0326-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-018-0326-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3467733335","display_name":null,"funder_award_id":"CR30I1 162758","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G4799479465","display_name":"MelanoBase","funder_award_id":"162758","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6169222452","display_name":null,"funder_award_id":"CR30I1_162758","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320323874","display_name":"Universit\u00e4t Z\u00fcrich","ror":"https://ror.org/02crff812"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2911448018.pdf","grobid_xml":"https://content.openalex.org/works/W2911448018.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W1592053870","https://openalex.org/W1983766967","https://openalex.org/W2008085355","https://openalex.org/W2033377040","https://openalex.org/W2040298461","https://openalex.org/W2065963191","https://openalex.org/W2069024774","https://openalex.org/W2070217628","https://openalex.org/W2071241901","https://openalex.org/W2076632311","https://openalex.org/W2091155135","https://openalex.org/W2095596879","https://openalex.org/W2096876337","https://openalex.org/W2101553882","https://openalex.org/W2103017472","https://openalex.org/W2104148262","https://openalex.org/W2107005506","https://openalex.org/W2115562276","https://openalex.org/W2116034137","https://openalex.org/W2122402213","https://openalex.org/W2123171788","https://openalex.org/W2131520733","https://openalex.org/W2135455794","https://openalex.org/W2136640051","https://openalex.org/W2138095945","https://openalex.org/W2142016317","https://openalex.org/W2146089916","https://openalex.org/W2146974287","https://openalex.org/W2161062388","https://openalex.org/W2169491861","https://openalex.org/W2214674395","https://openalex.org/W2229453122","https://openalex.org/W2230749025","https://openalex.org/W2239231358","https://openalex.org/W2252278859","https://openalex.org/W2294411959","https://openalex.org/W2347081127","https://openalex.org/W2414378847","https://openalex.org/W2515248967","https://openalex.org/W2576892796","https://openalex.org/W2579356637","https://openalex.org/W2600659824","https://openalex.org/W2609991681","https://openalex.org/W2616885684","https://openalex.org/W2743028754","https://openalex.org/W2763990719","https://openalex.org/W2767691613","https://openalex.org/W2769387903","https://openalex.org/W2769714647","https://openalex.org/W2787937245","https://openalex.org/W2805978167","https://openalex.org/W2890536775","https://openalex.org/W2953320089","https://openalex.org/W2977393556","https://openalex.org/W4211054902","https://openalex.org/W4245267204"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W4405124681","https://openalex.org/W4377865234","https://openalex.org/W2793132289"],"abstract_inverted_index":{"Combining":[0],"knowledge-based":[1],"and":[2],"data-driven":[3],"components":[4],"allows":[5],"creating":[6],"a":[7],"system":[8],"with":[9],"competitive":[10],"performance":[11],"in":[12],"biomedical":[13],"text":[14],"mining.":[15]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":8}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
